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b/tests/integration/backends/conftest.py |
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import pytest |
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import sqlalchemy |
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from ehrql.backends.emis import EMISBackend |
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from ehrql.backends.tpp import TPPBackend |
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def _get_select_all_query(request, backend): |
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try: |
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ql_table = request.function._table |
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except AttributeError: # pragma: no cover |
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raise RuntimeError( |
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f"Function '{request.function.__name__}' needs the " |
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f"`@register_test_for(table)` decorator applied" |
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) |
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qm_table = ql_table._qm_node |
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sql_table = backend.get_table_expression(qm_table.name, qm_table.schema) |
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columns = [ |
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# Using `type_coerce(..., None)` like this strips the type information from the |
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# SQLAlchemy column meaning we get back the type that the column actually is in |
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# database, not the type we've told SQLAlchemy it is. |
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sqlalchemy.type_coerce(column, None).label(column.key) |
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for column in sql_table.columns |
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] |
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return sqlalchemy.select(*columns) |
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def _select_all_fn(select_all_query, database): |
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def _select_all(*input_data): |
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database.setup(*input_data) |
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with database.engine().connect() as connection: |
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results = connection.execute(select_all_query) |
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return sorted( |
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[row._asdict() for row in results], key=lambda x: x["patient_id"] |
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) |
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return _select_all |
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@pytest.fixture |
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def select_all_emis(request, trino_database): |
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select_all_query = _get_select_all_query(request, EMISBackend()) |
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return _select_all_fn(select_all_query, trino_database) |
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@pytest.fixture |
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def select_all_tpp(request, mssql_database): |
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backend = TPPBackend(config={"TEMP_DATABASE_NAME": "temp_tables"}) |
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select_all_query = _get_select_all_query(request, backend) |
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return _select_all_fn(select_all_query, mssql_database) |