--- a +++ b/README.md @@ -0,0 +1,42 @@ +[](https://github.com/psf/black) +[](https://github.com/theislab/ehrapy/actions/workflows/build.yml) +[](https://codecov.io/gh/theislab/ehrapy) +[](https://opensource.org/licenses/Apache2.0) +[](https://pypi.org/project/ehrapy/) +[](https://pypi.org/project/ehrapy) +[](https://ehrapy.readthedocs.io/) +[](https://github.com/theislab/ehrapy/actions/workflows/test.yml) +[](https://github.com/pre-commit/pre-commit) + +<img src="https://user-images.githubusercontent.com/21954664/156930990-0d668468-0cd9-496e-995a-96d2c2407cf5.png" alt="ehrapy logo"> + +# ehrapy overview + + + +## Features + +- Exploratory and targeted analysis of Electronic Health Records +- Quality control & preprocessing +- Visualization & Exploration +- Clustering & trajectory inference + +## Installation + +You can install _ehrapy_ via [pip] from [PyPI]: + +```console +$ pip install ehrapy +``` + +## Usage + +Please have a look at the [Usage documentation](https://ehrapy.readthedocs.io/en/latest/usage/usage.html) and the [tutorials](https://ehrapy.readthedocs.io/en/latest/tutorials/index.html). + +```python +import ehrapy as ep +``` + +## Citation + +[Heumos, L., Ehmele, P., Treis, T. et al. An open-source framework for end-to-end analysis of electronic health record data. Nat Med (2024). https://doi.org/10.1038/s41591-024-03214-0](https://www.nature.com/articles/s41591-024-03214-0).