51 lines (43 with data), 715 Bytes

# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class
/rule_based_ner/__pycache__/
/biobert_re/__pycache/
/biobert_ner/__pycache__/

# Flask stuff:
instance/
.webassets-cache

# Jupyter Notebook
.ipynb_checkpoints

# Spyder project settings
.spyderproject
.spyproject

# Data files
data/
sample_ehr/
processed_data/
reports/
biobert_ner/dataset*/
biobert_ner/output*/
bilstm-crf_ner/results/
bilstm_crf_ner/output*/
dataset/
biobert_re/dataset*/
biobert_re/output*/
biobert_re/runs/
ade_corpus/
test_data/
runs/
results/
notebooks/
predicted_annotations/

# IntelliJ files
/annotating-ehr.iml
/.idea/

# Scratch files
Scratch.ipynb
Scrap.ipynb
Untitled*.ipynb

# Deployment files
/.gcloudignore