# Byte-compiled / optimized / DLL files

__pycache__/

*.py[cod]

*$py.class

/rule_based_ner/__pycache__/

/biobert_re/__pycache/

/biobert_ner/__pycache__/

# Flask stuff:

instance/

.webassets-cache

# Jupyter Notebook

.ipynb_checkpoints

# Spyder project settings

.spyderproject

.spyproject

# Data files

data/

sample_ehr/

processed_data/

reports/

biobert_ner/dataset*/

biobert_ner/output*/

bilstm-crf_ner/results/

bilstm_crf_ner/output*/

dataset/

biobert_re/dataset*/

biobert_re/output*/

biobert_re/runs/

ade_corpus/

test_data/

runs/

results/

notebooks/

predicted_annotations/

# IntelliJ files

/annotating-ehr.iml

/.idea/

# Scratch files

Scratch.ipynb

Scrap.ipynb

Untitled*.ipynb

# Deployment files

/.gcloudignore