We provide several Named Entity Recognition (NER) components.
Named Entity Recognition is the task of identifying short relevant spans of text, named entities, and classifying them into pre-defined categories.
In the case of clinical documents, these entities can be scores, disorders, behaviors, codes, dates, quantities, etc.
A component assigns entities to a document by adding them to the doc.ents
or doc.spans[group]
attributes. doc.ents
only supports non overlapping
entities, therefore, if two entities overlap, the longest one will be kept. doc.spans[group]
on the other hand, can contain overlapping entities.
To control where entities are added, you can use the span_setter
argument in any of these component.
::: edsnlp.pipes.base.SpanSetterArg
options:
heading_level: 2
show_bases: false
show_source: false
only_class_level: true
Component | Description |
---|---|
eds.covid |
A COVID mentions detector |
eds.charlson |
A Charlson score extractor |
eds.sofa |
A SOFA score extractor |
eds.elston_ellis |
An Elston & Ellis code extractor |
eds.emergency_priority |
A priority score extractor |
eds.emergency_ccmu |
A CCMU score extractor |
eds.emergency_gemsa |
A GEMSA score extractor |
eds.tnm |
A TNM score extractor |
eds.adicap |
A ADICAP codes extractor |
eds.drugs |
A drug mentions extractor |
eds.cim10 |
A CIM10 terminology matcher |
eds.umls |
An UMLS terminology matcher |
eds.ckd |
CKD extractor |
eds.copd |
COPD extractor |
eds.cerebrovascular_accident |
Cerebrovascular accident extractor |
eds.congestive_heart_failure |
Congestive heart failure extractor |
eds.connective_tissue_disease |
Connective tissue disease extractor |
eds.dementia |
Dementia extractor |
eds.diabetes |
Diabetes extractor |
eds.hemiplegia |
Hemiplegia extractor |
eds.leukemia |
Leukemia extractor |
eds.liver_disease |
Liver disease extractor |
eds.lymphoma |
Lymphoma extractor |
eds.myocardial_infarction |
Myocardial infarction extractor |
eds.peptic_ulcer_disease |
Peptic ulcer disease extractor |
eds.peripheral_vascular_disease |
Peripheral vascular disease extractor |
eds.solid_tumor |
Solid tumor extractor |
eds.alcohol |
Alcohol consumption extractor |
eds.tobacco |
Tobacco consumption extractor |