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b/tests/test_data.py |
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""" |
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Test suite. |
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""" |
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import unittest |
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import itertools |
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import torch |
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from continual.src.utils import data_processing |
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BATCH_SIZES = (1, 10, 100) |
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SEQ_LENS = (4, 12, 48) |
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N_VARS = (2, 10, 100) |
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N_CLASSES = (2, 10) |
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N_LAYERS = (1, 2, 3, 4) |
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HIDDEN_SIZES = (32, 64, 128) |
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DEMOGRAPHICS = [ |
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"age", |
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"gender", |
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"ethnicity", |
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"region", |
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"time_year", |
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"time_season", |
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"time_month", |
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] |
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OUTCOMES = ["ARF", "shock", "mortality"] |
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DATASETS = ["MIMIC", "eICU"] |
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class TestDataLoadingMethods(unittest.TestCase): |
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""" |
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Data loading tests. |
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""" |
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def test_modalfeatvalfromseq(self): |
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""" |
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Test that mode of correct dim is returned. |
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""" |
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for n_samples in BATCH_SIZES: |
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for seq_len in SEQ_LENS: |
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for n_feats in N_VARS: |
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for i in range(n_feats): |
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sim_data = ( |
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torch.randint(0, 1, (n_samples, seq_len, n_feats)) |
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.clone() |
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.detach() |
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.numpy() |
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) |
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modes = data_processing.get_modes(sim_data, feat=i) |
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self.assertEqual(modes.shape, torch.Size([n_samples])) |
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# CL task split tests |
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class TestCLConstructionMethods(unittest.TestCase): |
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""" |
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Test construction of Continual Learning task splits. |
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""" |
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def ttest_taskidsnonoverlap(self): |
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for dataset in DATASETS: |
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for experiment in OUTCOMES: |
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for demographic in DEMOGRAPHICS: |
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# JA: implement |
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tasks = data_processing.load_data(dataset, demographic, experiment) |
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for pair in itertools.combinations(tasks, repeat=2): |
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self.assertTrue(pair[0][:, 0].intersection(pair[0][:, 0]) == {}) |
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def ttest_tasktargets(self): |
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for dataset in DATASETS: |
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for experiment in OUTCOMES: |
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for demographic in DEMOGRAPHICS: |
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# JA: implement |
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tasks = data_processing.load_data(dataset, demographic, experiment) |
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for task in tasks: |
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self.assertTrue(len(task[:, -1].unique()) == 2) |
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if __name__ == "__main__": |
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unittest.main() |