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b/test/features/test_iob_feature.py |
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# Base Dependencies |
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# ---------------- |
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import pytest |
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import numpy as np |
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from random import randrange |
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# Local Dependencies |
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# ------------------ |
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from features.iob_feature import IOBFeature |
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from constants import DDI_IOB_TAGS, N2C2_IOB_TAGS |
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from models import RelationCollection, Entity, Relation |
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# Tests |
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# ------ |
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def test_iob_init(): |
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iob = IOBFeature("n2c2") |
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assert isinstance(iob, IOBFeature) |
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assert iob.dataset == "n2c2" |
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assert iob.iob_tags == N2C2_IOB_TAGS |
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assert iob.padding_idx is None |
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iob = IOBFeature("ddi") |
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assert isinstance(iob, IOBFeature) |
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assert iob.dataset == "ddi" |
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assert iob.iob_tags == DDI_IOB_TAGS |
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assert iob.padding_idx is None |
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def test_iob_init_unsupported_dataset_raises(): |
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with pytest.raises(ValueError): |
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iob = IOBFeature("i2b2") |
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def test_iob_get_feature_names(): |
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iob = IOBFeature("n2c2") |
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assert iob.get_feature_names() == ["IOB"] |
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def test_iob_fit(n2c2_small_collection): |
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iob = IOBFeature("n2c2") |
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iob = iob.fit(n2c2_small_collection) |
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assert isinstance(iob, IOBFeature) |
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def test_iob_index(): |
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for padding_idx in [0, 1, 5]: |
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iob = IOBFeature("n2c2", padding_idx=padding_idx) |
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for tag in iob.iob_tags: |
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idx = iob.iob_index(tag) |
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assert idx != padding_idx |
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def test_iob_index_unknown_tag_raises(): |
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iob = IOBFeature("n2c2", padding_idx=0) |
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with pytest.raises(Exception): |
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idx = iob.iob_idx("B-UNKN") |
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def test_iob_create_iob_feature(n2c2_small_collection, relation): |
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iob = IOBFeature("n2c2") |
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iob_feature = iob.create_iob_feature(n2c2_small_collection) |
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assert len(iob_feature) == len(n2c2_small_collection) |
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for i in range(len(n2c2_small_collection)): |
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e1_tokens = n2c2_small_collection.entities1_tokens[i] |
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e2_tokens = n2c2_small_collection.entities2_tokens[i] |
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sent_tokens = n2c2_small_collection.tokens[i] |
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assert len(iob_feature[i]) == len(sent_tokens) |
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if len(e1_tokens) > 1 and len(e2_tokens) > 1: |
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unique = 5 |
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elif len(e1_tokens) > 1 or len(e2_tokens) > 1: |
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unique = 4 |
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else: |
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unique = 3 |
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assert len(np.unique(iob_feature[i])) == unique |
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one_collection = RelationCollection(relation) |
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iob_feature = iob.create_iob_feature(one_collection) |
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assert len(iob_feature) == 1 |
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assert list(iob_feature[0]) == [0, 0, 0, 1, 0, 0, 13, 14, 0, 0, 0] |
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