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b/src/constants/ddi.py |
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# coding: utf-8 |
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# Base Dependencies |
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# ------------------ |
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from pathlib import Path |
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from os.path import join as pjoin |
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DDI_VOCAB_PATH = Path(pjoin("data", "ddi", "vocab", "vocab.txt")) |
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DDI_PATH = Path("data/ddi") |
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DDI_ENTITY_TYPES = ["DRUG", "GROUP", "BRAND", "DRUG_N"] |
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DDI_NO_REL = "NO-REL" |
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DDI_REL_TYPES = ["EFFECT", "MECHANISM", "ADVISE", "INT"] |
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DDI_ALL_TYPES = [DDI_NO_REL] + DDI_REL_TYPES |
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DDI_REL_TEST_COUNTS ={"EFFECT": 360, "MECHANISM": 302, "ADVISE": 221, "INT": 96} |
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DDI_REL_TEST_WEIGHTS = [ |
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360/979, |
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302/979, |
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221/979, |
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96/979, |
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] |
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DDI_ATTR_ENTITY_CANDIDATES = { |
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"DRUG": DDI_ENTITY_TYPES, |
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"GROUP": DDI_ENTITY_TYPES, |
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"BRAND": DDI_ENTITY_TYPES, |
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"DRUG_N": DDI_ENTITY_TYPES, |
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} |
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DDI_IOB_TAGS = [ |
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"O", |
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"B-DRUG", |
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"I-DRUG", |
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"B-GROUP", |
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"I-GROUP", |
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"B-BRAND", |
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"I-BRAND", |
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"B-DRUG_N", |
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"I-DRUG_N", |
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] |
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DDI_RD_MAX = 20 |
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DDI_HF_TRAIN_PATH = "data/ddi/train.hf" |
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DDI_HF_TEST_PATH = "data/ddi/test.hf" |