--- a
+++ b/notebooks/13_predictions.ipynb
@@ -0,0 +1,2673 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 1,
+   "id": "36f07a16",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "[nltk_data] Error loading punkt: <urlopen error [SSL:\n",
+      "[nltk_data]     CERTIFICATE_VERIFY_FAILED] certificate verify failed:\n",
+      "[nltk_data]     unable to get local issuer certificate (_ssl.c:1131)>\n",
+      "[nltk_data] Error loading stopwords: <urlopen error [SSL:\n",
+      "[nltk_data]     CERTIFICATE_VERIFY_FAILED] certificate verify failed:\n",
+      "[nltk_data]     unable to get local issuer certificate (_ssl.c:1131)>\n"
+     ]
+    }
+   ],
+   "source": [
+    "import sys\n",
+    "sys.path.append('../scripts')\n",
+    "from predict import NER"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 2,
+   "id": "0343fbb3",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Model provided:  Bidirectional LSTM Model with single LSTM layer\n"
+     ]
+    },
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "2023-04-10 10:34:04.285190: W tensorflow/core/platform/profile_utils/cpu_utils.cc:128] Failed to get CPU frequency: 0 Hz\n"
+     ]
+    },
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "1/1 [==============================] - 0s 422ms/step\n",
+      "Predicted Named Entities:\n",
+      "57: Age\n",
+      "year: Age\n",
+      "old: Age\n",
+      "man: Sex\n",
+      "presented: Nonbiological_location\n",
+      "emergency: Nonbiological_location\n",
+      "department: Duration\n",
+      "2: Duration\n",
+      "day: O\n",
+      "history: Sign_symptom\n",
+      "worsening: Sign_symptom\n",
+      "shortness: Biological_structure\n",
+      "breath: Sign_symptom\n",
+      "chest: History\n",
+      "pain: History\n",
+      "reported: History\n",
+      "recent: History\n",
+      "travel: History\n",
+      "sick: History\n",
+      "contacts: History\n",
+      "medical: History\n",
+      "history: History\n",
+      "significant: History\n",
+      "hypertension: History\n",
+      "dyslipidemia: History\n",
+      "type: History\n",
+      "2: Sign_symptom\n",
+      "diabetes: History\n",
+      "mellitus: Diagnostic_procedure\n",
+      "examination: O\n",
+      "tachycardic: Detailed_description\n",
+      "tachypneic: Detailed_description\n",
+      "oxygen: Biological_structure\n",
+      "saturation: Diagnostic_procedure\n",
+      "88: Detailed_description\n",
+      "room: O\n",
+      "air: Distance\n",
+      "chest: Distance\n",
+      "radiography: O\n",
+      "revealed: Distance\n",
+      "bilateral: O\n",
+      "opacities: O\n",
+      "consistent: O\n",
+      "pulmonary: Detailed_description\n",
+      "edema: Distance\n",
+      "patient: Distance\n",
+      "admitted: Distance\n",
+      "intensive: Medication\n",
+      "care: Therapeutic_procedure\n",
+      "unit: Medication\n",
+      "management: Dosage\n",
+      "acute: Dosage\n",
+      "decompensated: Dosage\n",
+      "heart: Clinical_event\n",
+      "failure: Other_entity\n",
+      "started: Nonbiological_location\n",
+      "intravenous: Date\n",
+      "diuretics: Date\n",
+      "inotropic: O\n",
+      "support: O\n",
+      "dobutamine: O\n",
+      "next: O\n",
+      "several: O\n",
+      "days: O\n",
+      "symptoms: O\n",
+      "improved: O\n",
+      "discharged: O\n",
+      "home: O\n",
+      "instructions: O\n",
+      "follow: O\n",
+      "primary: O\n",
+      "care: O\n",
+      "provider: O\n",
+      "1: O\n",
+      "week: O\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<span class=\"tex2jax_ignore\"><div class=\"entities\" style=\"line-height: 2.5; direction: ltr\">A \n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    57\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    year\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    old\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    man\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sex</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    presented\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    emergency\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    department\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " with a \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       "-day \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    worsening\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    shortness\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    breath\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pain\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". He \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    reported\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " no \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    recent\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    travel\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " or \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    sick\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    contacts\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". His \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    medical\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    significant\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    hypertension\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    dyslipidemia\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", and \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    type\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diabetes\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    mellitus\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       ". On examination, he was \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachycardic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachypneic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ", with \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    oxygen\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    saturation\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    88\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       "% on room \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    air\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       ". \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    Chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       " radiography \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    revealed\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       " bilateral opacities consistent with \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pulmonary\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    edema\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       ". The \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    patient\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    admitted\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intensive\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e6ccb2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    care\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Therapeutic_procedure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    unit\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    management\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    acute\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    decompensated\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #77c5d5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    heart\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Clinical_event</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #d5f5e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    failure\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Other_entity</span>\n",
+       "</mark>\n",
+       ". He was \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    started\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " on \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intravenous\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diuretics\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.</div></span>"
+      ],
+      "text/plain": [
+       "<IPython.core.display.HTML object>"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "NER(\"model_1\",\n",
+    "        \"A 57-year-old man presented to the emergency department with a 2-day history of worsening shortness of breath and chest pain. He reported no recent travel or sick contacts. His medical history was significant for hypertension, dyslipidemia, and type 2 diabetes mellitus. On examination, he was tachycardic and tachypneic, with oxygen saturation of 88% on room air. Chest radiography revealed bilateral opacities consistent with pulmonary edema. The patient was admitted to the intensive care unit for management of acute decompensated heart failure. He was started on intravenous diuretics and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "d8b3b880",
+   "metadata": {},
+   "source": [
+    "## MODEL 2"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 3,
+   "id": "27ca7748",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Model provided:  Bidirectional LSTM Model with two LSTM layers and one Hidden Dense Layer\n",
+      "1/1 [==============================] - 1s 651ms/step\n",
+      "Predicted Named Entities:\n",
+      "57: Age\n",
+      "year: Age\n",
+      "old: Age\n",
+      "man: Sex\n",
+      "presented: Nonbiological_location\n",
+      "emergency: Nonbiological_location\n",
+      "department: History\n",
+      "2: Date\n",
+      "day: O\n",
+      "history: Sign_symptom\n",
+      "worsening: Sign_symptom\n",
+      "shortness: Biological_structure\n",
+      "breath: Sign_symptom\n",
+      "chest: O\n",
+      "pain: Nonbiological_location\n",
+      "reported: History\n",
+      "recent: History\n",
+      "travel: History\n",
+      "sick: History\n",
+      "contacts: History\n",
+      "medical: Nonbiological_location\n",
+      "history: Nonbiological_location\n",
+      "significant: History\n",
+      "hypertension: Nonbiological_location\n",
+      "dyslipidemia: Nonbiological_location\n",
+      "type: Nonbiological_location\n",
+      "2: Biological_structure\n",
+      "diabetes: Diagnostic_procedure\n",
+      "mellitus: Diagnostic_procedure\n",
+      "examination: Lab_value\n",
+      "tachycardic: Detailed_description\n",
+      "tachypneic: Detailed_description\n",
+      "oxygen: Biological_structure\n",
+      "saturation: Diagnostic_procedure\n",
+      "88: Detailed_description\n",
+      "room: O\n",
+      "air: Biological_structure\n",
+      "chest: Sign_symptom\n",
+      "radiography: O\n",
+      "revealed: Biological_structure\n",
+      "bilateral: Biological_structure\n",
+      "opacities: Biological_structure\n",
+      "consistent: O\n",
+      "pulmonary: Detailed_description\n",
+      "edema: Distance\n",
+      "patient: Therapeutic_procedure\n",
+      "admitted: Medication\n",
+      "intensive: Medication\n",
+      "care: Medication\n",
+      "unit: Medication\n",
+      "management: Dosage\n",
+      "acute: Dosage\n",
+      "decompensated: History\n",
+      "heart: Date\n",
+      "failure: Nonbiological_location\n",
+      "started: History\n",
+      "intravenous: History\n",
+      "diuretics: Duration\n",
+      "inotropic: O\n",
+      "support: O\n",
+      "dobutamine: O\n",
+      "next: O\n",
+      "several: O\n",
+      "days: O\n",
+      "symptoms: O\n",
+      "improved: O\n",
+      "discharged: O\n",
+      "home: O\n",
+      "instructions: O\n",
+      "follow: O\n",
+      "primary: O\n",
+      "care: O\n",
+      "provider: O\n",
+      "1: O\n",
+      "week: O\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<span class=\"tex2jax_ignore\"><div class=\"entities\" style=\"line-height: 2.5; direction: ltr\">A \n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    57\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    year\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    old\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    man\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sex</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    presented\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    emergency\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    department\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " with a \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       "-day \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    worsening\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    shortness\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    breath\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " and chest \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pain\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       ". He \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    reported\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " no \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    recent\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    travel\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " or \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    sick\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    contacts\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". His \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    medical\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    significant\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    hypertension\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       ", \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    dyslipidemia\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       ", and \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    type\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diabetes\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    mellitus\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       ". On \n",
+       "<mark class=\"entity\" style=\"background: #f4b3c2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    examination\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Lab_value</span>\n",
+       "</mark>\n",
+       ", he was \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachycardic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachypneic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ", with \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    oxygen\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    saturation\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    88\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       "% on room \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    air\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       ". \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    Chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " radiography \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    revealed\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    bilateral\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    opacities\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " consistent with \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pulmonary\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    edema\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       ". The \n",
+       "<mark class=\"entity\" style=\"background: #e6ccb2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    patient\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Therapeutic_procedure</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    admitted\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intensive\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    care\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    unit\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    management\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    acute\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    decompensated\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    heart\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    failure\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       ". He was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    started\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " on \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intravenous\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diuretics\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.</div></span>"
+      ],
+      "text/plain": [
+       "<IPython.core.display.HTML object>"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "NER(\"model_2\",\n",
+    "        \"A 57-year-old man presented to the emergency department with a 2-day history of worsening shortness of breath and chest pain. He reported no recent travel or sick contacts. His medical history was significant for hypertension, dyslipidemia, and type 2 diabetes mellitus. On examination, he was tachycardic and tachypneic, with oxygen saturation of 88% on room air. Chest radiography revealed bilateral opacities consistent with pulmonary edema. The patient was admitted to the intensive care unit for management of acute decompensated heart failure. He was started on intravenous diuretics and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "d0f9b03d",
+   "metadata": {},
+   "source": [
+    "## MODEL 3"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 4,
+   "id": "e3fb5de6",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Model provided:  Bidirectional LSTM model with BioWordVecEmbedding Layers followed two LSTM layers and one Hidden Dense Layer\n",
+      "1/1 [==============================] - 1s 616ms/step\n",
+      "Predicted Named Entities:\n",
+      "57: Age\n",
+      "year: Age\n",
+      "old: Age\n",
+      "man: Sex\n",
+      "presented: Nonbiological_location\n",
+      "emergency: Nonbiological_location\n",
+      "department: Date\n",
+      "2: Duration\n",
+      "day: O\n",
+      "history: Sign_symptom\n",
+      "worsening: Sign_symptom\n",
+      "shortness: Biological_structure\n",
+      "breath: Sign_symptom\n",
+      "chest: O\n",
+      "pain: History\n",
+      "reported: History\n",
+      "recent: History\n",
+      "travel: O\n",
+      "sick: History\n",
+      "contacts: History\n",
+      "medical: History\n",
+      "history: History\n",
+      "significant: History\n",
+      "hypertension: History\n",
+      "dyslipidemia: History\n",
+      "type: O\n",
+      "2: Sign_symptom\n",
+      "diabetes: Diagnostic_procedure\n",
+      "mellitus: Diagnostic_procedure\n",
+      "examination: Date\n",
+      "tachycardic: History\n",
+      "tachypneic: Detailed_description\n",
+      "oxygen: Biological_structure\n",
+      "saturation: Diagnostic_procedure\n",
+      "88: Detailed_description\n",
+      "room: O\n",
+      "air: Distance\n",
+      "chest: Sign_symptom\n",
+      "radiography: O\n",
+      "revealed: Nonbiological_location\n",
+      "bilateral: Nonbiological_location\n",
+      "opacities: Nonbiological_location\n",
+      "consistent: O\n",
+      "pulmonary: Detailed_description\n",
+      "edema: Distance\n",
+      "patient: Distance\n",
+      "admitted: Administration\n",
+      "intensive: Medication\n",
+      "care: Medication\n",
+      "unit: Medication\n",
+      "management: O\n",
+      "acute: Clinical_event\n",
+      "decompensated: Nonbiological_location\n",
+      "heart: Clinical_event\n",
+      "failure: Nonbiological_location\n",
+      "started: Nonbiological_location\n",
+      "intravenous: Date\n",
+      "diuretics: Duration\n",
+      "inotropic: O\n",
+      "support: O\n",
+      "dobutamine: O\n",
+      "next: O\n",
+      "several: O\n",
+      "days: O\n",
+      "symptoms: O\n",
+      "improved: O\n",
+      "discharged: O\n",
+      "home: O\n",
+      "instructions: O\n",
+      "follow: O\n",
+      "primary: O\n",
+      "care: O\n",
+      "provider: O\n",
+      "1: O\n",
+      "week: O\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<span class=\"tex2jax_ignore\"><div class=\"entities\" style=\"line-height: 2.5; direction: ltr\">A \n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    57\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    year\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    old\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    man\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sex</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    presented\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    emergency\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    department\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " with a \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       "-day \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    worsening\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    shortness\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    breath\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " and chest \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pain\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". He \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    reported\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " no \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    recent\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " travel or \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    sick\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    contacts\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". His \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    medical\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    significant\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    hypertension\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    dyslipidemia\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", and type \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diabetes\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    mellitus\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       ". On \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    examination\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       ", he was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachycardic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachypneic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ", with \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    oxygen\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    saturation\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    88\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       "% on room \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    air\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       ". \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    Chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " radiography \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    revealed\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    bilateral\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    opacities\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " consistent with \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pulmonary\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    edema\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       ". The \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    patient\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    admitted\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Administration</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intensive\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    care\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    unit\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " for management of \n",
+       "<mark class=\"entity\" style=\"background: #77c5d5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    acute\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Clinical_event</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    decompensated\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #77c5d5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    heart\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Clinical_event</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    failure\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       ". He was \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    started\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " on \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intravenous\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diuretics\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.</div></span>"
+      ],
+      "text/plain": [
+       "<IPython.core.display.HTML object>"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "NER(\"model_3\",\n",
+    "        \"A 57-year-old man presented to the emergency department with a 2-day history of worsening shortness of breath and chest pain. He reported no recent travel or sick contacts. His medical history was significant for hypertension, dyslipidemia, and type 2 diabetes mellitus. On examination, he was tachycardic and tachypneic, with oxygen saturation of 88% on room air. Chest radiography revealed bilateral opacities consistent with pulmonary edema. The patient was admitted to the intensive care unit for management of acute decompensated heart failure. He was started on intravenous diuretics and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "839cf967",
+   "metadata": {},
+   "source": [
+    "## MODEL 4"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 5,
+   "id": "16e0a82c",
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Model provided:  Bidirectional LSTM Model with Time Distributed Dense Layers - Single LSTM layer and Two time distributed dense layers\n",
+      "1/1 [==============================] - 0s 319ms/step\n",
+      "Predicted Named Entities:\n",
+      "57: Age\n",
+      "year: Age\n",
+      "old: Age\n",
+      "man: Sex\n",
+      "presented: Nonbiological_location\n",
+      "emergency: Nonbiological_location\n",
+      "department: Date\n",
+      "2: Duration\n",
+      "day: History\n",
+      "history: Sign_symptom\n",
+      "worsening: Sign_symptom\n",
+      "shortness: Sign_symptom\n",
+      "breath: Sign_symptom\n",
+      "chest: History\n",
+      "pain: History\n",
+      "reported: History\n",
+      "recent: History\n",
+      "travel: History\n",
+      "sick: History\n",
+      "contacts: History\n",
+      "medical: History\n",
+      "history: History\n",
+      "significant: History\n",
+      "hypertension: History\n",
+      "dyslipidemia: History\n",
+      "type: Diagnostic_procedure\n",
+      "2: Biological_structure\n",
+      "diabetes: Diagnostic_procedure\n",
+      "mellitus: Diagnostic_procedure\n",
+      "examination: Lab_value\n",
+      "tachycardic: Detailed_description\n",
+      "tachypneic: Detailed_description\n",
+      "oxygen: Biological_structure\n",
+      "saturation: Diagnostic_procedure\n",
+      "88: Detailed_description\n",
+      "room: O\n",
+      "air: Biological_structure\n",
+      "chest: O\n",
+      "radiography: O\n",
+      "revealed: Distance\n",
+      "bilateral: Nonbiological_location\n",
+      "opacities: Nonbiological_location\n",
+      "consistent: O\n",
+      "pulmonary: O\n",
+      "edema: Medication\n",
+      "patient: Medication\n",
+      "admitted: Administration\n",
+      "intensive: Medication\n",
+      "care: Medication\n",
+      "unit: Medication\n",
+      "management: Dosage\n",
+      "acute: Dosage\n",
+      "decompensated: Nonbiological_location\n",
+      "heart: Clinical_event\n",
+      "failure: Medication\n",
+      "started: Nonbiological_location\n",
+      "intravenous: Date\n",
+      "diuretics: Duration\n",
+      "inotropic: O\n",
+      "support: O\n",
+      "dobutamine: O\n",
+      "next: O\n",
+      "several: O\n",
+      "days: O\n",
+      "symptoms: O\n",
+      "improved: O\n",
+      "discharged: O\n",
+      "home: O\n",
+      "instructions: O\n",
+      "follow: O\n",
+      "primary: O\n",
+      "care: O\n",
+      "provider: O\n",
+      "1: O\n",
+      "week: O\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<span class=\"tex2jax_ignore\"><div class=\"entities\" style=\"line-height: 2.5; direction: ltr\">A \n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    57\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    year\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    old\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    man\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sex</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    presented\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    emergency\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    department\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " with a \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    day\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    worsening\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    shortness\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    breath\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pain\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". He \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    reported\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " no \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    recent\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    travel\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " or \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    sick\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    contacts\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". His \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    medical\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    significant\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    hypertension\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    dyslipidemia\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", and \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    type\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diabetes\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    mellitus\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       ". On \n",
+       "<mark class=\"entity\" style=\"background: #f4b3c2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    examination\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Lab_value</span>\n",
+       "</mark>\n",
+       ", he was \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachycardic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachypneic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ", with \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    oxygen\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    saturation\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    88\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       "% on room \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    air\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       ". Chest radiography \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    revealed\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    bilateral\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    opacities\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " consistent with pulmonary \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    edema\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       ". The \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    patient\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    admitted\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Administration</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intensive\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    care\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    unit\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    management\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    acute\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    decompensated\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #77c5d5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    heart\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Clinical_event</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    failure\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       ". He was \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    started\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " on \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intravenous\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diuretics\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.</div></span>"
+      ],
+      "text/plain": [
+       "<IPython.core.display.HTML object>"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "NER(\"model_4\",\n",
+    "        \"A 57-year-old man presented to the emergency department with a 2-day history of worsening shortness of breath and chest pain. He reported no recent travel or sick contacts. His medical history was significant for hypertension, dyslipidemia, and type 2 diabetes mellitus. On examination, he was tachycardic and tachypneic, with oxygen saturation of 88% on room air. Chest radiography revealed bilateral opacities consistent with pulmonary edema. The patient was admitted to the intensive care unit for management of acute decompensated heart failure. He was started on intravenous diuretics and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "d4bf4681",
+   "metadata": {},
+   "source": [
+    "## MODEL 5"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 6,
+   "id": "b5c6fa06",
+   "metadata": {
+    "scrolled": false
+   },
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Model provided:  Bidirectional LSTM Model with two LSTM layers and one Hidden Dense Layer\n",
+      "WARNING:tensorflow:5 out of the last 5 calls to <function Model.make_predict_function.<locals>.predict_function at 0x2eb898310> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has reduce_retracing=True option that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.\n",
+      "1/1 [==============================] - 0s 337ms/step\n",
+      "Predicted Named Entities:\n",
+      "57: Age\n",
+      "year: Age\n",
+      "old: Age\n",
+      "man: Sex\n",
+      "presented: Nonbiological_location\n",
+      "emergency: Nonbiological_location\n",
+      "department: Duration\n",
+      "2: Duration\n",
+      "day: O\n",
+      "history: Sign_symptom\n",
+      "worsening: Sign_symptom\n",
+      "shortness: Biological_structure\n",
+      "breath: Sign_symptom\n",
+      "chest: History\n",
+      "pain: History\n",
+      "reported: History\n",
+      "recent: O\n",
+      "travel: O\n",
+      "sick: O\n",
+      "contacts: History\n",
+      "medical: History\n",
+      "history: History\n",
+      "significant: History\n",
+      "hypertension: History\n",
+      "dyslipidemia: History\n",
+      "type: O\n",
+      "2: O\n",
+      "diabetes: Diagnostic_procedure\n",
+      "mellitus: Diagnostic_procedure\n",
+      "examination: Lab_value\n",
+      "tachycardic: Detailed_description\n",
+      "tachypneic: Detailed_description\n",
+      "oxygen: Biological_structure\n",
+      "saturation: Diagnostic_procedure\n",
+      "88: Detailed_description\n",
+      "room: O\n",
+      "air: Biological_structure\n",
+      "chest: Sign_symptom\n",
+      "radiography: O\n",
+      "revealed: Nonbiological_location\n",
+      "bilateral: Nonbiological_location\n",
+      "opacities: Nonbiological_location\n",
+      "consistent: O\n",
+      "pulmonary: Detailed_description\n",
+      "edema: Therapeutic_procedure\n",
+      "patient: Distance\n",
+      "admitted: Administration\n",
+      "intensive: Medication\n",
+      "care: Medication\n",
+      "unit: Medication\n",
+      "management: O\n",
+      "acute: O\n",
+      "decompensated: Nonbiological_location\n",
+      "heart: Clinical_event\n",
+      "failure: O\n",
+      "started: Nonbiological_location\n",
+      "intravenous: Duration\n",
+      "diuretics: Duration\n",
+      "inotropic: O\n",
+      "support: O\n",
+      "dobutamine: O\n",
+      "next: O\n",
+      "several: O\n",
+      "days: O\n",
+      "symptoms: O\n",
+      "improved: O\n",
+      "discharged: O\n",
+      "home: O\n",
+      "instructions: O\n",
+      "follow: O\n",
+      "primary: O\n",
+      "care: O\n",
+      "provider: O\n",
+      "1: O\n",
+      "week: O\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<span class=\"tex2jax_ignore\"><div class=\"entities\" style=\"line-height: 2.5; direction: ltr\">A \n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    57\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    year\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    old\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    man\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sex</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    presented\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    emergency\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    department\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " with a \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       "-day \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    worsening\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    shortness\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    breath\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pain\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". He \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    reported\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " no recent travel or sick \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    contacts\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". His \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    medical\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    significant\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    hypertension\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    dyslipidemia\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", and type 2 \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diabetes\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    mellitus\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       ". On \n",
+       "<mark class=\"entity\" style=\"background: #f4b3c2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    examination\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Lab_value</span>\n",
+       "</mark>\n",
+       ", he was \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachycardic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachypneic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ", with \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    oxygen\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    saturation\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    88\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       "% on room \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    air\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       ". \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    Chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " radiography \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    revealed\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    bilateral\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    opacities\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " consistent with \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pulmonary\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e6ccb2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    edema\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Therapeutic_procedure</span>\n",
+       "</mark>\n",
+       ". The \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    patient\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    admitted\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Administration</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intensive\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    care\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    unit\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " for management of acute \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    decompensated\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #77c5d5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    heart\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Clinical_event</span>\n",
+       "</mark>\n",
+       " failure. He was \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    started\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " on \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intravenous\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diuretics\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.</div></span>"
+      ],
+      "text/plain": [
+       "<IPython.core.display.HTML object>"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "NER(\"model_5\",\n",
+    "        \"A 57-year-old man presented to the emergency department with a 2-day history of worsening shortness of breath and chest pain. He reported no recent travel or sick contacts. His medical history was significant for hypertension, dyslipidemia, and type 2 diabetes mellitus. On examination, he was tachycardic and tachypneic, with oxygen saturation of 88% on room air. Chest radiography revealed bilateral opacities consistent with pulmonary edema. The patient was admitted to the intensive care unit for management of acute decompensated heart failure. He was started on intravenous diuretics and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "fbd84584",
+   "metadata": {},
+   "source": [
+    "## MODEL 6"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 7,
+   "id": "73fb52a0",
+   "metadata": {
+    "scrolled": false
+   },
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Model provided:  Bidirectional LSTM Time Distirbuted Dense Layers and Convolutional 1D layer\n",
+      "WARNING:tensorflow:6 out of the last 6 calls to <function Model.make_predict_function.<locals>.predict_function at 0x2d766ce50> triggered tf.function retracing. Tracing is expensive and the excessive number of tracings could be due to (1) creating @tf.function repeatedly in a loop, (2) passing tensors with different shapes, (3) passing Python objects instead of tensors. For (1), please define your @tf.function outside of the loop. For (2), @tf.function has reduce_retracing=True option that can avoid unnecessary retracing. For (3), please refer to https://www.tensorflow.org/guide/function#controlling_retracing and https://www.tensorflow.org/api_docs/python/tf/function for  more details.\n",
+      "1/1 [==============================] - 0s 318ms/step\n",
+      "Predicted Named Entities:\n",
+      "57: Age\n",
+      "year: Age\n",
+      "old: Age\n",
+      "man: Sex\n",
+      "presented: Personal_background\n",
+      "emergency: Nonbiological_location\n",
+      "department: Nonbiological_location\n",
+      "2: Nonbiological_location\n",
+      "day: History\n",
+      "history: Sign_symptom\n",
+      "worsening: Sign_symptom\n",
+      "shortness: Biological_structure\n",
+      "breath: Sign_symptom\n",
+      "chest: History\n",
+      "pain: History\n",
+      "reported: History\n",
+      "recent: History\n",
+      "travel: History\n",
+      "sick: History\n",
+      "contacts: History\n",
+      "medical: History\n",
+      "history: History\n",
+      "significant: History\n",
+      "hypertension: History\n",
+      "dyslipidemia: History\n",
+      "type: Sign_symptom\n",
+      "2: Sign_symptom\n",
+      "diabetes: Biological_structure\n",
+      "mellitus: Diagnostic_procedure\n",
+      "examination: Detailed_description\n",
+      "tachycardic: Detailed_description\n",
+      "tachypneic: Detailed_description\n",
+      "oxygen: Biological_structure\n",
+      "saturation: Diagnostic_procedure\n",
+      "88: Lab_value\n",
+      "room: O\n",
+      "air: Biological_structure\n",
+      "chest: Detailed_description\n",
+      "radiography: O\n",
+      "revealed: Nonbiological_location\n",
+      "bilateral: Nonbiological_location\n",
+      "opacities: Nonbiological_location\n",
+      "consistent: O\n",
+      "pulmonary: Detailed_description\n",
+      "edema: Detailed_description\n",
+      "patient: Detailed_description\n",
+      "admitted: Therapeutic_procedure\n",
+      "intensive: Medication\n",
+      "care: Therapeutic_procedure\n",
+      "unit: Therapeutic_procedure\n",
+      "management: Dosage\n",
+      "acute: Dosage\n",
+      "decompensated: Dosage\n",
+      "heart: O\n",
+      "failure: Medication\n",
+      "started: Medication\n",
+      "intravenous: Duration\n",
+      "diuretics: Duration\n",
+      "inotropic: O\n",
+      "support: O\n",
+      "dobutamine: O\n",
+      "next: O\n",
+      "several: O\n",
+      "days: O\n",
+      "symptoms: O\n",
+      "improved: O\n",
+      "discharged: O\n",
+      "home: O\n",
+      "instructions: O\n",
+      "follow: O\n",
+      "primary: O\n",
+      "care: O\n",
+      "provider: O\n",
+      "1: O\n",
+      "week: O\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<span class=\"tex2jax_ignore\"><div class=\"entities\" style=\"line-height: 2.5; direction: ltr\">A \n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    57\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    year\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    old\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    man\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sex</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #a0ced9; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    presented\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Personal_background</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    emergency\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    department\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " with a \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    day\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    worsening\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    shortness\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    breath\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pain\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". He \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    reported\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " no \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    recent\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    travel\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " or \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    sick\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    contacts\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". His \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    medical\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    significant\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    hypertension\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    dyslipidemia\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", and \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    type\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diabetes\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    mellitus\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       ". On \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    examination\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ", he was \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachycardic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachypneic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ", with \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    oxygen\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    saturation\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #f4b3c2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    88\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Lab_value</span>\n",
+       "</mark>\n",
+       "% on room \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    air\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       ". \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    Chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " radiography \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    revealed\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    bilateral\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    opacities\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " consistent with \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pulmonary\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    edema\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ". The \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    patient\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #e6ccb2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    admitted\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Therapeutic_procedure</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intensive\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e6ccb2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    care\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Therapeutic_procedure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e6ccb2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    unit\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Therapeutic_procedure</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    management\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    acute\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #b9e8d8; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    decompensated\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Dosage</span>\n",
+       "</mark>\n",
+       " heart \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    failure\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       ". He was \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    started\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " on \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intravenous\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diuretics\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.</div></span>"
+      ],
+      "text/plain": [
+       "<IPython.core.display.HTML object>"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "NER(\"model_6\",\n",
+    "        \"A 57-year-old man presented to the emergency department with a 2-day history of worsening shortness of breath and chest pain. He reported no recent travel or sick contacts. His medical history was significant for hypertension, dyslipidemia, and type 2 diabetes mellitus. On examination, he was tachycardic and tachypneic, with oxygen saturation of 88% on room air. Chest radiography revealed bilateral opacities consistent with pulmonary edema. The patient was admitted to the intensive care unit for management of acute decompensated heart failure. He was started on intravenous diuretics and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.\")"
+   ]
+  },
+  {
+   "cell_type": "markdown",
+   "id": "e92dfa6e",
+   "metadata": {},
+   "source": [
+    "## MODEL 7"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 8,
+   "id": "21b2b199",
+   "metadata": {
+    "scrolled": false
+   },
+   "outputs": [
+    {
+     "name": "stdout",
+     "output_type": "stream",
+     "text": [
+      "Model provided:  Bidirectional LSTM CRF model with BioWordVecEmbedding Layers followed two LSTM layers, Time Distirbuted Dense Layers and Convolutional 1D layer\n",
+      "1/1 [==============================] - 0s 365ms/step\n",
+      "Predicted Named Entities:\n",
+      "57: Age\n",
+      "year: Age\n",
+      "old: Age\n",
+      "man: Sex\n",
+      "presented: Nonbiological_location\n",
+      "emergency: Nonbiological_location\n",
+      "department: Date\n",
+      "2: Duration\n",
+      "day: O\n",
+      "history: Sign_symptom\n",
+      "worsening: Detailed_description\n",
+      "shortness: Biological_structure\n",
+      "breath: Sign_symptom\n",
+      "chest: History\n",
+      "pain: History\n",
+      "reported: History\n",
+      "recent: History\n",
+      "travel: History\n",
+      "sick: History\n",
+      "contacts: History\n",
+      "medical: History\n",
+      "history: History\n",
+      "significant: History\n",
+      "hypertension: History\n",
+      "dyslipidemia: History\n",
+      "type: O\n",
+      "2: Sign_symptom\n",
+      "diabetes: Diagnostic_procedure\n",
+      "mellitus: Diagnostic_procedure\n",
+      "examination: Lab_value\n",
+      "tachycardic: Detailed_description\n",
+      "tachypneic: Detailed_description\n",
+      "oxygen: Biological_structure\n",
+      "saturation: Diagnostic_procedure\n",
+      "88: Detailed_description\n",
+      "room: O\n",
+      "air: Biological_structure\n",
+      "chest: Sign_symptom\n",
+      "radiography: O\n",
+      "revealed: Nonbiological_location\n",
+      "bilateral: Nonbiological_location\n",
+      "opacities: Nonbiological_location\n",
+      "consistent: O\n",
+      "pulmonary: Detailed_description\n",
+      "edema: Distance\n",
+      "patient: History\n",
+      "admitted: Detailed_description\n",
+      "intensive: Medication\n",
+      "care: Medication\n",
+      "unit: Medication\n",
+      "management: O\n",
+      "acute: O\n",
+      "decompensated: Nonbiological_location\n",
+      "heart: Clinical_event\n",
+      "failure: Nonbiological_location\n",
+      "started: Nonbiological_location\n",
+      "intravenous: Date\n",
+      "diuretics: Duration\n",
+      "inotropic: O\n",
+      "support: O\n",
+      "dobutamine: O\n",
+      "next: O\n",
+      "several: O\n",
+      "days: O\n",
+      "symptoms: O\n",
+      "improved: O\n",
+      "discharged: O\n",
+      "home: O\n",
+      "instructions: O\n",
+      "follow: O\n",
+      "primary: O\n",
+      "care: O\n",
+      "provider: O\n",
+      "1: O\n",
+      "week: O\n"
+     ]
+    },
+    {
+     "data": {
+      "text/html": [
+       "<span class=\"tex2jax_ignore\"><div class=\"entities\" style=\"line-height: 2.5; direction: ltr\">A \n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    57\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    year\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       "-\n",
+       "<mark class=\"entity\" style=\"background: #f6c3d0; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    old\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Age</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    man\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sex</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    presented\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    emergency\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    department\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " with a \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       "-day \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    worsening\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    shortness\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    breath\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pain\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". He \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    reported\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " no \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    recent\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    travel\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " or \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    sick\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    contacts\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ". His \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    medical\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    history\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    significant\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " for \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    hypertension\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    dyslipidemia\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       ", and type \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    2\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diabetes\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    mellitus\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       ". On \n",
+       "<mark class=\"entity\" style=\"background: #f4b3c2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    examination\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Lab_value</span>\n",
+       "</mark>\n",
+       ", he was \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachycardic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " and \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    tachypneic\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       ", with \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    oxygen\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #c5b4e3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    saturation\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Diagnostic_procedure</span>\n",
+       "</mark>\n",
+       " of \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    88\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       "% on room \n",
+       "<mark class=\"entity\" style=\"background: #9ddfd3; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    air\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Biological_structure</span>\n",
+       "</mark>\n",
+       ". \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    Chest\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Sign_symptom</span>\n",
+       "</mark>\n",
+       " radiography \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    revealed\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    bilateral\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    opacities\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " consistent with \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    pulmonary\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #bde0fe; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    edema\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Distance</span>\n",
+       "</mark>\n",
+       ". The \n",
+       "<mark class=\"entity\" style=\"background: #e2f0cb; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    patient\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">History</span>\n",
+       "</mark>\n",
+       " was \n",
+       "<mark class=\"entity\" style=\"background: #ffb347; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    admitted\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Detailed_description</span>\n",
+       "</mark>\n",
+       " to the \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intensive\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    care\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f9d5e5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    unit\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Medication</span>\n",
+       "</mark>\n",
+       " for management of acute \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    decompensated\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #77c5d5; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    heart\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Clinical_event</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    failure\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       ". He was \n",
+       "<mark class=\"entity\" style=\"background: #f7a399; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    started\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Nonbiological_location</span>\n",
+       "</mark>\n",
+       " on \n",
+       "<mark class=\"entity\" style=\"background: #f1f0d2; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    intravenous\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Date</span>\n",
+       "</mark>\n",
+       " \n",
+       "<mark class=\"entity\" style=\"background: #ffdfba; padding: 0.45em 0.6em; margin: 0 0.25em; line-height: 1; border-radius: 0.35em;\">\n",
+       "    diuretics\n",
+       "    <span style=\"font-size: 0.8em; font-weight: bold; line-height: 1; border-radius: 0.35em; vertical-align: middle; margin-left: 0.5rem\">Duration</span>\n",
+       "</mark>\n",
+       " and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.</div></span>"
+      ],
+      "text/plain": [
+       "<IPython.core.display.HTML object>"
+      ]
+     },
+     "metadata": {},
+     "output_type": "display_data"
+    }
+   ],
+   "source": [
+    "NER(\"model_7\",\n",
+    "        \"A 57-year-old man presented to the emergency department with a 2-day history of worsening shortness of breath and chest pain. He reported no recent travel or sick contacts. His medical history was significant for hypertension, dyslipidemia, and type 2 diabetes mellitus. On examination, he was tachycardic and tachypneic, with oxygen saturation of 88% on room air. Chest radiography revealed bilateral opacities consistent with pulmonary edema. The patient was admitted to the intensive care unit for management of acute decompensated heart failure. He was started on intravenous diuretics and inotropic support with dobutamine. Over the next several days, his symptoms improved and he was discharged to home with instructions to follow up with his primary care provider in 1 week.\")"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "id": "753f82ed",
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "Python 3 (ipykernel)",
+   "language": "python",
+   "name": "python3"
+  },
+  "language_info": {
+   "codemirror_mode": {
+    "name": "ipython",
+    "version": 3
+   },
+   "file_extension": ".py",
+   "mimetype": "text/x-python",
+   "name": "python",
+   "nbconvert_exporter": "python",
+   "pygments_lexer": "ipython3",
+   "version": "3.8.10"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 5
+}