--- a +++ b/CheXbert/src/constants.py @@ -0,0 +1,15 @@ +NUM_EPOCHS = 8 #Number of epochs to train for +BATCH_SIZE = 18 #Change this depending on GPU memory +NUM_WORKERS = 4 #A value of 0 means the main process loads the data +LEARNING_RATE = 2e-5 +LOG_EVERY = 200 #iterations after which to log status during training +VALID_NITER = 2000 #iterations after which to evaluate model and possibly save (if dev performance is a new max) +PRETRAIN_PATH = None #path to pretrained model, such as BlueBERT or BioBERT +PAD_IDX = 0 #padding index as required by the tokenizer + +#CONDITIONS is a list of all 14 medical observations +CONDITIONS = ['Enlarged Cardiomediastinum', 'Cardiomegaly', 'Lung Opacity', + 'Lung Lesion', 'Edema', 'Consolidation', 'Pneumonia', 'Atelectasis', + 'Pneumothorax', 'Pleural Effusion', 'Pleural Other', 'Fracture', + 'Support Devices', 'No Finding'] +CLASS_MAPPING = {0: "Blank", 1: "Positive", 2: "Negative", 3: "Uncertain"}