Diff of /environment.yml [000000] .. [2d4573]

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a b/environment.yml
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name: EHRKit
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channels:
3
  - pytorch
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  - conda-forge
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  - defaults
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dependencies:
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  - _libgcc_mutex=0.1=main
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  - aiohttp=3.7.3=py36h27cfd23_1
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  - argon2-cffi=20.1.0=py36h7b6447c_1
10
  - astroid=2.4.2=py36_0
11
  - async-timeout=3.0.1=py36_0
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  - async_generator=1.10=py36h28b3542_0
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  - backcall=0.2.0=py_0
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  - blas=1.0=mkl
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  - bleach=3.2.1=py_0
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  - bokeh=2.2.3=py36h5fab9bb_0
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  - ca-certificates=2021.1.19=h06a4308_0
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  - cffi=1.14.4=py36h261ae71_0
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  - chardet=3.0.4=py36h06a4308_1003
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  - click=7.1.2=py_0
21
  - cloudpickle=1.6.0=py_0
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  - contextvars=2.4=py_0
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  - cryptography=3.3.1=py36h3c74f83_0
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  - cudatoolkit=10.2.89=hfd86e86_1
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  - cytoolz=0.11.0=py36h1d69622_1
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  - dask=2020.12.0=pyhd8ed1ab_0
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  - dask-core=2020.12.0=pyhd8ed1ab_0
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  - dataclasses=0.7=py36_0
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  - dbus=1.13.18=hb2f20db_0
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  - decorator=4.4.2=py_0
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  - defusedxml=0.6.0=py_0
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  - distributed=2020.12.0=py36h5fab9bb_0
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  - entrypoints=0.3=py36_0
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  - expat=2.2.10=he6710b0_2
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  - faiss-gpu=1.6.5=py3.6_hed44701_0_cuda10.2
36
  - filelock=3.0.12=pyhd3eb1b0_1
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  - fontconfig=2.13.0=h9420a91_0
38
  - freetype=2.10.4=h5ab3b9f_0
39
  - fsspec=0.8.5=pyhd8ed1ab_0
40
  - glib=2.66.1=h92f7085_0
41
  - google-api-core=1.22.2=py36_0
42
  - google-cloud-core=1.5.0=pyhd3eb1b0_0
43
  - google-cloud-storage=1.35.0=pyhd3eb1b0_0
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  - google-crc32c=1.1.0=py36h27cfd23_1
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  - google-resumable-media=1.2.0=pyhd3eb1b0_1
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  - googleapis-common-protos=1.52.0=py36_0
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  - gst-plugins-base=1.14.0=hbbd80ab_1
48
  - gstreamer=1.14.0=hb31296c_0
49
  - heapdict=1.0.1=py_0
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  - icu=58.2=he6710b0_3
51
  - idna_ssl=1.1.0=py36_0
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  - immutables=0.14=py36h8c4c3a4_1
53
  - importlib_metadata=2.0.0=1
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  - intel-openmp=2020.2=254
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  - ipykernel=5.3.4=py36h5ca1d4c_0
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  - ipython=7.16.1=py36h5ca1d4c_0
57
  - ipython_genutils=0.2.0=pyhd3eb1b0_1
58
  - ipywidgets=7.5.1=py_1
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  - isort=5.6.4=py_0
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  - jedi=0.17.0=py36_0
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  - jinja2=2.11.2=py_0
62
  - jpeg=9b=h024ee3a_2
63
  - jsonschema=3.2.0=py_2
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  - jupyter=1.0.0=py36_7
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  - jupyter_client=6.1.7=py_0
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  - jupyter_console=6.2.0=py_0
67
  - jupyter_core=4.7.0=py36h06a4308_0
68
  - jupyterlab_pygments=0.1.2=py_0
69
  - lazy-object-proxy=1.4.3=py36h27cfd23_2
70
  - lcms2=2.11=h396b838_0
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  - ld_impl_linux-64=2.33.1=h53a641e_7
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  - libcrc32c=1.1.1=he6710b0_2
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  - libedit=3.1.20191231=h14c3975_1
74
  - libfaiss=1.6.5=h4fe19ad_0_cuda10.2
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  - libffi=3.3=he6710b0_2
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  - libgcc-ng=9.1.0=hdf63c60_0
77
  - libgfortran-ng=7.3.0=hdf63c60_0
78
  - libllvm10=10.0.1=he513fc3_3
79
  - libpng=1.6.37=hbc83047_0
80
  - libprotobuf=3.13.0.1=hd408876_0
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  - libsodium=1.0.18=h7b6447c_0
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  - libstdcxx-ng=9.1.0=hdf63c60_0
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  - libtiff=4.1.0=h2733197_1
84
  - libuuid=1.0.3=h1bed415_2
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  - libxcb=1.14=h7b6447c_0
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  - libxml2=2.9.10=hb55368b_3
87
  - llvmlite=0.34.0=py36h269e1b5_4
88
  - locket=0.2.0=py_2
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  - lz4-c=1.9.2=heb0550a_3
90
  - markupsafe=1.1.1=py36h7b6447c_0
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  - matplotlib-base=3.3.2=py36h817c723_0
92
  - mccabe=0.6.1=py36_1
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  - missingno=0.4.2=pyhd3eb1b0_1
94
  - mistune=0.8.4=py36h7b6447c_0
95
  - mkl=2020.2=256
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  - mkl-service=2.3.0=py36he8ac12f_0
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  - mkl_fft=1.2.0=py36h23d657b_0
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  - mkl_random=1.1.1=py36h0573a6f_0
99
  - modin=0.8.2=pyhd8ed1ab_0
100
  - msgpack-python=1.0.1=py36hff7bd54_0
101
  - multidict=4.7.6=py36h7b6447c_1
102
  - nbclient=0.5.1=py_0
103
  - nbconvert=6.0.7=py36_0
104
  - nbformat=5.0.8=py_0
105
  - ncurses=6.2=he6710b0_1
106
  - nest-asyncio=1.4.3=pyhd3eb1b0_0
107
  - nltk=3.5=py_0
108
  - notebook=6.1.4=py36_0
109
  - numba=0.51.2=py36h7c3b610_0
110
  - numpy-base=1.19.2=py36hfa32c7d_0
111
  - olefile=0.46=py36_0
112
  - openssl=1.1.1i=h27cfd23_0
113
  - pandoc=2.11=hb0f4dca_0
114
  - pandocfilters=1.4.3=py36h06a4308_1
115
  - parso=0.8.1=pyhd3eb1b0_0
116
  - partd=1.1.0=py_0
117
  - pcre=8.44=he6710b0_0
118
  - pexpect=4.8.0=pyhd3eb1b0_3
119
  - pickleshare=0.7.5=pyhd3eb1b0_1003
120
  - pip=20.2.2=py36_0
121
  - plotly=4.14.1=pyhd3eb1b0_0
122
  - prometheus_client=0.9.0=pyhd3eb1b0_0
123
  - prompt-toolkit=3.0.8=py_0
124
  - prompt_toolkit=3.0.8=0
125
  - psutil=5.7.2=py36h7b6447c_0
126
  - ptyprocess=0.6.0=pyhd3eb1b0_2
127
  - pyasn1=0.4.8=py_0
128
  - pycparser=2.20=py_2
129
  - pygments=2.7.3=pyhd3eb1b0_0
130
  - pylint=2.6.0=py36_0
131
  - pyopenssl=20.0.1=pyhd3eb1b0_1
132
  - pyqt=5.9.2=py36h05f1152_2
133
  - pyrsistent=0.17.3=py36h7b6447c_0
134
  - pysocks=1.7.1=py36h06a4308_0
135
  - python=3.6.10=h7579374_2
136
  - python-dateutil=2.8.1=py_0
137
  - python_abi=3.6=1_cp36m
138
  - pyzmq=20.0.0=py36h2531618_1
139
  - qt=5.9.7=h5867ecd_1
140
  - qtconsole=4.7.7=py_0
141
  - qtpy=1.9.0=py_0
142
  - readline=8.0=h7b6447c_0
143
  - retrying=1.3.3=py36_2
144
  - rsa=4.6=py_0
145
  - seaborn=0.11.0=py_0
146
  - send2trash=1.5.0=pyhd3eb1b0_1
147
  - setuptools=49.6.0=py36_0
148
  - sip=4.19.8=py36hf484d3e_0
149
  - smart_open=4.0.1=pyhd3eb1b0_0
150
  - sortedcontainers=2.3.0=pyhd8ed1ab_0
151
  - sqlite=3.33.0=h62c20be_0
152
  - swifter=1.0.6=py36h9f0ad1d_0
153
  - tblib=1.6.0=py_0
154
  - terminado=0.9.1=py36_0
155
  - testpath=0.4.4=py_0
156
  - threadpoolctl=2.1.0=pyh5ca1d4c_0
157
  - tk=8.6.10=hbc83047_0
158
  - toml=0.10.1=py_0
159
  - toolz=0.11.1=py_0
160
  - tornado=6.1=py36h27cfd23_0
161
  - traitlets=4.3.3=py36_0
162
  - typed-ast=1.4.1=py36h7b6447c_0
163
  - typing-extensions=3.7.4.3=0
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  - typing_extensions=3.7.4.3=py_0
165
  - wcwidth=0.2.5=py_0
166
  - webencodings=0.5.1=py36_1
167
  - wheel=0.35.1=py_0
168
  - widgetsnbextension=3.5.1=py36_0
169
  - wrapt=1.11.2=py36h7b6447c_0
170
  - xz=5.2.5=h7b6447c_0
171
  - yaml=0.2.5=h516909a_0
172
  - yarl=1.5.1=py36h7b6447c_0
173
  - zeromq=4.3.3=he6710b0_3
174
  - zict=2.0.0=py_0
175
  - zlib=1.2.11=h7b6447c_3
176
  - zstd=1.4.5=h9ceee32_0
177
  - pip:
178
    - absl-py==0.10.0
179
    - aiocontextvars==0.2.2
180
    - allennlp==1.0.0
181
    - allennlp-models==1.0.0
182
    - attrs==20.1.0
183
    - bcrypt==3.2.0
184
    - beautifulsoup4==4.9.3
185
    - bert-extractive-summarizer==0.4.1
186
    - bitarray==1.2.1
187
    - blessings==1.7
188
    - blinker==1.4
189
    - blis==0.4.1
190
    - boto==2.49.0
191
    - boto3==1.14.0
192
    - botocore==1.17.0
193
    - bs4==0.0.1
194
    - cached-property==1.5.2
195
    - cachetools==4.1.1
196
    - certifi==2020.4.5.1
197
    - conllu==3.0
198
    - coverage==5.5
199
    - cycler==0.10.0
200
    - cymem==2.0.3
201
    - cython==0.29.23
202
    - descartes==1.1.0
203
    - docutils==0.15.2
204
    - editdistance==0.5.3
205
    - flask==1.1.2
206
    - flask-login==0.5.0
207
    - flask-mail==0.9.1
208
    - flask-sqlalchemy==2.4.4
209
    - flask-wtf==0.14.3
210
    - future==0.18.2
211
    - gensim==3.8.1
212
    - gitdb==4.0.5
213
    - gitpython==3.1.11
214
    - google-auth==1.21.0
215
    - google-auth-oauthlib==0.4.1
216
    - gpustat==0.6.0
217
    - grpcio==1.31.0
218
    - h5py==3.1.0
219
    - idna==2.9
220
    - importlib-metadata==1.7.0
221
    - iniconfig==1.0.1
222
    - isodate==0.6.0
223
    - itsdangerous==1.1.0
224
    - jellyfish==0.8.2
225
    - jmespath==0.9.4
226
    - joblib==0.14.1
227
    - jsonnet==0.16.0
228
    - jsonpickle==1.4.1
229
    - keybert==0.2.0
230
    - kiwisolver==1.1.0
231
    - loguru==0.5.3
232
    - markdown==3.2.2
233
    - matplotlib==3.1.3
234
    - mizani==0.7.3
235
    - more-itertools==8.2.0
236
    - mrakun==0.44
237
    - murmurhash==1.0.2
238
    - networkx==2.5.1
239
    - neuralcoref==4.0
240
    - numpy==1.18.2
241
    - nvidia-ml-py3==7.352.0
242
    - oauthlib==3.1.0
243
    - overrides==3.0.0
244
    - packaging==20.4
245
    - palettable==3.3.0
246
    - pandas==1.0.3
247
    - path==13.1.0
248
    - path-py==12.4.0
249
    - patsy==0.5.1
250
    - pillow==7.2.0
251
    - plac==0.9.6
252
    - plotnine==0.8.0
253
    - pluggy==0.13.1
254
    - preshed==3.0.4
255
    - protobuf==3.13.0
256
    - psycopg2-binary==2.8.6
257
    - py==1.9.0
258
    - py-rouge==1.1
259
    - py3plex==0.94
260
    - pyasn1-modules==0.2.8
261
    - pymysql==0.9.3
262
    - pyparsing==2.4.6
263
    - pytest==6.0.1
264
    - pytextrank==2.1.0
265
    - pytorch-lightning==1.1.8
266
    - pytorch-nlp==0.5.0
267
    - pytorch-pretrained-bert==0.6.2
268
    - pytorch-transformers==1.1.0
269
    - pytz==2020.1
270
    - pyyaml==5.3.1
271
    - rake-nltk==1.0.4
272
    - ramp-database==0.7.1
273
    - ramp-engine==0.7.1
274
    - ramp-frontend==0.7.1
275
    - ramp-utils==0.7.1
276
    - ramp-workflow==0.3.3
277
    - rdflib==5.0.0
278
    - regex==2020.7.14
279
    - requests==2.23.0
280
    - requests-oauthlib==1.3.0
281
    - rouge==1.0.0
282
    - s3transfer==0.3.3
283
    - sacremoses==0.0.43
284
    - scikit-learn==0.22.1
285
    - scipy==1.5.4
286
    - segtok==1.5.10
287
    - sentence-transformers==1.0.4
288
    - sentencepiece==0.1.91
289
    - singledispatch==3.4.0.3
290
    - six==1.14.0
291
    - sklearn==0.0
292
    - smart-open==1.9.0
293
    - smmap==3.0.4
294
    - soupsieve==2.2
295
    - spacy==2.2.1
296
    - sqlalchemy==1.3.20
297
    - srsly==1.0.2
298
    - statsmodels==0.12.2
299
    - tabulate==0.8.9
300
    - tensorboard==2.3.0
301
    - tensorboard-plugin-wit==1.7.0
302
    - tensorboardx==2.1
303
    - thinc==7.1.1
304
    - tokenizers==0.10.1
305
    - torch==1.8.1
306
    - torchvision==0.6.0
307
    - tqdm==4.45.0
308
    - transformers==4.3.2
309
    - urllib3==1.25.8
310
    - wasabi==0.6.0
311
    - werkzeug==1.0.1
312
    - word2number==1.1
313
    - wtforms==2.3.3
314
    - yake==0.4.6
315
    - zipp==3.1.0