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a |
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b/environment.yml |
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1 |
name: EHRKit |
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2 |
channels: |
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3 |
- pytorch |
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- conda-forge |
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5 |
- defaults |
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6 |
dependencies: |
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- _libgcc_mutex=0.1=main |
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8 |
- aiohttp=3.7.3=py36h27cfd23_1 |
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9 |
- argon2-cffi=20.1.0=py36h7b6447c_1 |
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10 |
- astroid=2.4.2=py36_0 |
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11 |
- async-timeout=3.0.1=py36_0 |
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12 |
- async_generator=1.10=py36h28b3542_0 |
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13 |
- backcall=0.2.0=py_0 |
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14 |
- blas=1.0=mkl |
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15 |
- bleach=3.2.1=py_0 |
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16 |
- bokeh=2.2.3=py36h5fab9bb_0 |
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17 |
- ca-certificates=2021.1.19=h06a4308_0 |
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18 |
- cffi=1.14.4=py36h261ae71_0 |
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19 |
- chardet=3.0.4=py36h06a4308_1003 |
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20 |
- click=7.1.2=py_0 |
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21 |
- cloudpickle=1.6.0=py_0 |
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22 |
- contextvars=2.4=py_0 |
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23 |
- cryptography=3.3.1=py36h3c74f83_0 |
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24 |
- cudatoolkit=10.2.89=hfd86e86_1 |
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25 |
- cytoolz=0.11.0=py36h1d69622_1 |
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26 |
- dask=2020.12.0=pyhd8ed1ab_0 |
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27 |
- dask-core=2020.12.0=pyhd8ed1ab_0 |
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28 |
- dataclasses=0.7=py36_0 |
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29 |
- dbus=1.13.18=hb2f20db_0 |
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30 |
- decorator=4.4.2=py_0 |
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31 |
- defusedxml=0.6.0=py_0 |
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32 |
- distributed=2020.12.0=py36h5fab9bb_0 |
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33 |
- entrypoints=0.3=py36_0 |
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34 |
- expat=2.2.10=he6710b0_2 |
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35 |
- faiss-gpu=1.6.5=py3.6_hed44701_0_cuda10.2 |
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36 |
- filelock=3.0.12=pyhd3eb1b0_1 |
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37 |
- fontconfig=2.13.0=h9420a91_0 |
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38 |
- freetype=2.10.4=h5ab3b9f_0 |
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39 |
- fsspec=0.8.5=pyhd8ed1ab_0 |
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40 |
- glib=2.66.1=h92f7085_0 |
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41 |
- google-api-core=1.22.2=py36_0 |
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42 |
- google-cloud-core=1.5.0=pyhd3eb1b0_0 |
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43 |
- google-cloud-storage=1.35.0=pyhd3eb1b0_0 |
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44 |
- google-crc32c=1.1.0=py36h27cfd23_1 |
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45 |
- google-resumable-media=1.2.0=pyhd3eb1b0_1 |
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46 |
- googleapis-common-protos=1.52.0=py36_0 |
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47 |
- gst-plugins-base=1.14.0=hbbd80ab_1 |
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48 |
- gstreamer=1.14.0=hb31296c_0 |
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49 |
- heapdict=1.0.1=py_0 |
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50 |
- icu=58.2=he6710b0_3 |
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51 |
- idna_ssl=1.1.0=py36_0 |
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52 |
- immutables=0.14=py36h8c4c3a4_1 |
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53 |
- importlib_metadata=2.0.0=1 |
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54 |
- intel-openmp=2020.2=254 |
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55 |
- ipykernel=5.3.4=py36h5ca1d4c_0 |
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56 |
- ipython=7.16.1=py36h5ca1d4c_0 |
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57 |
- ipython_genutils=0.2.0=pyhd3eb1b0_1 |
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58 |
- ipywidgets=7.5.1=py_1 |
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59 |
- isort=5.6.4=py_0 |
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60 |
- jedi=0.17.0=py36_0 |
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61 |
- jinja2=2.11.2=py_0 |
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62 |
- jpeg=9b=h024ee3a_2 |
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63 |
- jsonschema=3.2.0=py_2 |
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64 |
- jupyter=1.0.0=py36_7 |
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65 |
- jupyter_client=6.1.7=py_0 |
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66 |
- jupyter_console=6.2.0=py_0 |
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67 |
- jupyter_core=4.7.0=py36h06a4308_0 |
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68 |
- jupyterlab_pygments=0.1.2=py_0 |
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69 |
- lazy-object-proxy=1.4.3=py36h27cfd23_2 |
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70 |
- lcms2=2.11=h396b838_0 |
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71 |
- ld_impl_linux-64=2.33.1=h53a641e_7 |
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72 |
- libcrc32c=1.1.1=he6710b0_2 |
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73 |
- libedit=3.1.20191231=h14c3975_1 |
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74 |
- libfaiss=1.6.5=h4fe19ad_0_cuda10.2 |
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75 |
- libffi=3.3=he6710b0_2 |
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76 |
- libgcc-ng=9.1.0=hdf63c60_0 |
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77 |
- libgfortran-ng=7.3.0=hdf63c60_0 |
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78 |
- libllvm10=10.0.1=he513fc3_3 |
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79 |
- libpng=1.6.37=hbc83047_0 |
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80 |
- libprotobuf=3.13.0.1=hd408876_0 |
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81 |
- libsodium=1.0.18=h7b6447c_0 |
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82 |
- libstdcxx-ng=9.1.0=hdf63c60_0 |
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83 |
- libtiff=4.1.0=h2733197_1 |
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84 |
- libuuid=1.0.3=h1bed415_2 |
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85 |
- libxcb=1.14=h7b6447c_0 |
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86 |
- libxml2=2.9.10=hb55368b_3 |
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87 |
- llvmlite=0.34.0=py36h269e1b5_4 |
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88 |
- locket=0.2.0=py_2 |
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89 |
- lz4-c=1.9.2=heb0550a_3 |
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90 |
- markupsafe=1.1.1=py36h7b6447c_0 |
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91 |
- matplotlib-base=3.3.2=py36h817c723_0 |
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92 |
- mccabe=0.6.1=py36_1 |
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93 |
- missingno=0.4.2=pyhd3eb1b0_1 |
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94 |
- mistune=0.8.4=py36h7b6447c_0 |
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95 |
- mkl=2020.2=256 |
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96 |
- mkl-service=2.3.0=py36he8ac12f_0 |
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97 |
- mkl_fft=1.2.0=py36h23d657b_0 |
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98 |
- mkl_random=1.1.1=py36h0573a6f_0 |
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99 |
- modin=0.8.2=pyhd8ed1ab_0 |
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100 |
- msgpack-python=1.0.1=py36hff7bd54_0 |
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101 |
- multidict=4.7.6=py36h7b6447c_1 |
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102 |
- nbclient=0.5.1=py_0 |
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103 |
- nbconvert=6.0.7=py36_0 |
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104 |
- nbformat=5.0.8=py_0 |
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105 |
- ncurses=6.2=he6710b0_1 |
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106 |
- nest-asyncio=1.4.3=pyhd3eb1b0_0 |
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107 |
- nltk=3.5=py_0 |
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108 |
- notebook=6.1.4=py36_0 |
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109 |
- numba=0.51.2=py36h7c3b610_0 |
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110 |
- numpy-base=1.19.2=py36hfa32c7d_0 |
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111 |
- olefile=0.46=py36_0 |
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112 |
- openssl=1.1.1i=h27cfd23_0 |
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113 |
- pandoc=2.11=hb0f4dca_0 |
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|
114 |
- pandocfilters=1.4.3=py36h06a4308_1 |
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|
115 |
- parso=0.8.1=pyhd3eb1b0_0 |
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116 |
- partd=1.1.0=py_0 |
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117 |
- pcre=8.44=he6710b0_0 |
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|
118 |
- pexpect=4.8.0=pyhd3eb1b0_3 |
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119 |
- pickleshare=0.7.5=pyhd3eb1b0_1003 |
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120 |
- pip=20.2.2=py36_0 |
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121 |
- plotly=4.14.1=pyhd3eb1b0_0 |
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122 |
- prometheus_client=0.9.0=pyhd3eb1b0_0 |
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123 |
- prompt-toolkit=3.0.8=py_0 |
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|
124 |
- prompt_toolkit=3.0.8=0 |
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125 |
- psutil=5.7.2=py36h7b6447c_0 |
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126 |
- ptyprocess=0.6.0=pyhd3eb1b0_2 |
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127 |
- pyasn1=0.4.8=py_0 |
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|
128 |
- pycparser=2.20=py_2 |
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|
129 |
- pygments=2.7.3=pyhd3eb1b0_0 |
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130 |
- pylint=2.6.0=py36_0 |
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131 |
- pyopenssl=20.0.1=pyhd3eb1b0_1 |
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132 |
- pyqt=5.9.2=py36h05f1152_2 |
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133 |
- pyrsistent=0.17.3=py36h7b6447c_0 |
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134 |
- pysocks=1.7.1=py36h06a4308_0 |
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135 |
- python=3.6.10=h7579374_2 |
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136 |
- python-dateutil=2.8.1=py_0 |
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137 |
- python_abi=3.6=1_cp36m |
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|
138 |
- pyzmq=20.0.0=py36h2531618_1 |
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139 |
- qt=5.9.7=h5867ecd_1 |
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|
140 |
- qtconsole=4.7.7=py_0 |
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|
141 |
- qtpy=1.9.0=py_0 |
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|
142 |
- readline=8.0=h7b6447c_0 |
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143 |
- retrying=1.3.3=py36_2 |
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144 |
- rsa=4.6=py_0 |
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145 |
- seaborn=0.11.0=py_0 |
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|
146 |
- send2trash=1.5.0=pyhd3eb1b0_1 |
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147 |
- setuptools=49.6.0=py36_0 |
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|
148 |
- sip=4.19.8=py36hf484d3e_0 |
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|
149 |
- smart_open=4.0.1=pyhd3eb1b0_0 |
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|
150 |
- sortedcontainers=2.3.0=pyhd8ed1ab_0 |
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|
151 |
- sqlite=3.33.0=h62c20be_0 |
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|
152 |
- swifter=1.0.6=py36h9f0ad1d_0 |
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153 |
- tblib=1.6.0=py_0 |
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|
154 |
- terminado=0.9.1=py36_0 |
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|
155 |
- testpath=0.4.4=py_0 |
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|
156 |
- threadpoolctl=2.1.0=pyh5ca1d4c_0 |
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|
157 |
- tk=8.6.10=hbc83047_0 |
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158 |
- toml=0.10.1=py_0 |
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|
159 |
- toolz=0.11.1=py_0 |
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|
160 |
- tornado=6.1=py36h27cfd23_0 |
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|
161 |
- traitlets=4.3.3=py36_0 |
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|
162 |
- typed-ast=1.4.1=py36h7b6447c_0 |
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|
163 |
- typing-extensions=3.7.4.3=0 |
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|
164 |
- typing_extensions=3.7.4.3=py_0 |
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165 |
- wcwidth=0.2.5=py_0 |
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|
166 |
- webencodings=0.5.1=py36_1 |
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167 |
- wheel=0.35.1=py_0 |
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|
168 |
- widgetsnbextension=3.5.1=py36_0 |
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169 |
- wrapt=1.11.2=py36h7b6447c_0 |
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|
170 |
- xz=5.2.5=h7b6447c_0 |
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|
171 |
- yaml=0.2.5=h516909a_0 |
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|
172 |
- yarl=1.5.1=py36h7b6447c_0 |
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|
173 |
- zeromq=4.3.3=he6710b0_3 |
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|
174 |
- zict=2.0.0=py_0 |
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|
175 |
- zlib=1.2.11=h7b6447c_3 |
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176 |
- zstd=1.4.5=h9ceee32_0 |
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177 |
- pip: |
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178 |
- absl-py==0.10.0 |
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179 |
- aiocontextvars==0.2.2 |
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180 |
- allennlp==1.0.0 |
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181 |
- allennlp-models==1.0.0 |
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182 |
- attrs==20.1.0 |
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183 |
- bcrypt==3.2.0 |
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184 |
- beautifulsoup4==4.9.3 |
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185 |
- bert-extractive-summarizer==0.4.1 |
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|
186 |
- bitarray==1.2.1 |
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|
187 |
- blessings==1.7 |
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|
188 |
- blinker==1.4 |
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|
189 |
- blis==0.4.1 |
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|
190 |
- boto==2.49.0 |
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191 |
- boto3==1.14.0 |
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192 |
- botocore==1.17.0 |
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|
193 |
- bs4==0.0.1 |
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|
194 |
- cached-property==1.5.2 |
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|
195 |
- cachetools==4.1.1 |
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|
196 |
- certifi==2020.4.5.1 |
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|
197 |
- conllu==3.0 |
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|
198 |
- coverage==5.5 |
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|
199 |
- cycler==0.10.0 |
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200 |
- cymem==2.0.3 |
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|
201 |
- cython==0.29.23 |
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|
202 |
- descartes==1.1.0 |
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203 |
- docutils==0.15.2 |
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|
204 |
- editdistance==0.5.3 |
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205 |
- flask==1.1.2 |
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206 |
- flask-login==0.5.0 |
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207 |
- flask-mail==0.9.1 |
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208 |
- flask-sqlalchemy==2.4.4 |
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209 |
- flask-wtf==0.14.3 |
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210 |
- future==0.18.2 |
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211 |
- gensim==3.8.1 |
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212 |
- gitdb==4.0.5 |
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213 |
- gitpython==3.1.11 |
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|
214 |
- google-auth==1.21.0 |
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|
215 |
- google-auth-oauthlib==0.4.1 |
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|
216 |
- gpustat==0.6.0 |
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|
217 |
- grpcio==1.31.0 |
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|
218 |
- h5py==3.1.0 |
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|
219 |
- idna==2.9 |
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|
220 |
- importlib-metadata==1.7.0 |
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|
221 |
- iniconfig==1.0.1 |
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|
222 |
- isodate==0.6.0 |
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|
223 |
- itsdangerous==1.1.0 |
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|
224 |
- jellyfish==0.8.2 |
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|
225 |
- jmespath==0.9.4 |
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|
226 |
- joblib==0.14.1 |
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|
227 |
- jsonnet==0.16.0 |
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|
228 |
- jsonpickle==1.4.1 |
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|
229 |
- keybert==0.2.0 |
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|
230 |
- kiwisolver==1.1.0 |
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|
231 |
- loguru==0.5.3 |
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|
232 |
- markdown==3.2.2 |
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|
233 |
- matplotlib==3.1.3 |
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|
234 |
- mizani==0.7.3 |
|
|
235 |
- more-itertools==8.2.0 |
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|
236 |
- mrakun==0.44 |
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|
237 |
- murmurhash==1.0.2 |
|
|
238 |
- networkx==2.5.1 |
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|
239 |
- neuralcoref==4.0 |
|
|
240 |
- numpy==1.18.2 |
|
|
241 |
- nvidia-ml-py3==7.352.0 |
|
|
242 |
- oauthlib==3.1.0 |
|
|
243 |
- overrides==3.0.0 |
|
|
244 |
- packaging==20.4 |
|
|
245 |
- palettable==3.3.0 |
|
|
246 |
- pandas==1.0.3 |
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|
247 |
- path==13.1.0 |
|
|
248 |
- path-py==12.4.0 |
|
|
249 |
- patsy==0.5.1 |
|
|
250 |
- pillow==7.2.0 |
|
|
251 |
- plac==0.9.6 |
|
|
252 |
- plotnine==0.8.0 |
|
|
253 |
- pluggy==0.13.1 |
|
|
254 |
- preshed==3.0.4 |
|
|
255 |
- protobuf==3.13.0 |
|
|
256 |
- psycopg2-binary==2.8.6 |
|
|
257 |
- py==1.9.0 |
|
|
258 |
- py-rouge==1.1 |
|
|
259 |
- py3plex==0.94 |
|
|
260 |
- pyasn1-modules==0.2.8 |
|
|
261 |
- pymysql==0.9.3 |
|
|
262 |
- pyparsing==2.4.6 |
|
|
263 |
- pytest==6.0.1 |
|
|
264 |
- pytextrank==2.1.0 |
|
|
265 |
- pytorch-lightning==1.1.8 |
|
|
266 |
- pytorch-nlp==0.5.0 |
|
|
267 |
- pytorch-pretrained-bert==0.6.2 |
|
|
268 |
- pytorch-transformers==1.1.0 |
|
|
269 |
- pytz==2020.1 |
|
|
270 |
- pyyaml==5.3.1 |
|
|
271 |
- rake-nltk==1.0.4 |
|
|
272 |
- ramp-database==0.7.1 |
|
|
273 |
- ramp-engine==0.7.1 |
|
|
274 |
- ramp-frontend==0.7.1 |
|
|
275 |
- ramp-utils==0.7.1 |
|
|
276 |
- ramp-workflow==0.3.3 |
|
|
277 |
- rdflib==5.0.0 |
|
|
278 |
- regex==2020.7.14 |
|
|
279 |
- requests==2.23.0 |
|
|
280 |
- requests-oauthlib==1.3.0 |
|
|
281 |
- rouge==1.0.0 |
|
|
282 |
- s3transfer==0.3.3 |
|
|
283 |
- sacremoses==0.0.43 |
|
|
284 |
- scikit-learn==0.22.1 |
|
|
285 |
- scipy==1.5.4 |
|
|
286 |
- segtok==1.5.10 |
|
|
287 |
- sentence-transformers==1.0.4 |
|
|
288 |
- sentencepiece==0.1.91 |
|
|
289 |
- singledispatch==3.4.0.3 |
|
|
290 |
- six==1.14.0 |
|
|
291 |
- sklearn==0.0 |
|
|
292 |
- smart-open==1.9.0 |
|
|
293 |
- smmap==3.0.4 |
|
|
294 |
- soupsieve==2.2 |
|
|
295 |
- spacy==2.2.1 |
|
|
296 |
- sqlalchemy==1.3.20 |
|
|
297 |
- srsly==1.0.2 |
|
|
298 |
- statsmodels==0.12.2 |
|
|
299 |
- tabulate==0.8.9 |
|
|
300 |
- tensorboard==2.3.0 |
|
|
301 |
- tensorboard-plugin-wit==1.7.0 |
|
|
302 |
- tensorboardx==2.1 |
|
|
303 |
- thinc==7.1.1 |
|
|
304 |
- tokenizers==0.10.1 |
|
|
305 |
- torch==1.8.1 |
|
|
306 |
- torchvision==0.6.0 |
|
|
307 |
- tqdm==4.45.0 |
|
|
308 |
- transformers==4.3.2 |
|
|
309 |
- urllib3==1.25.8 |
|
|
310 |
- wasabi==0.6.0 |
|
|
311 |
- werkzeug==1.0.1 |
|
|
312 |
- word2number==1.1 |
|
|
313 |
- wtforms==2.3.3 |
|
|
314 |
- yake==0.4.6 |
|
|
315 |
- zipp==3.1.0 |