Models:
Philip Bordner
philipB/
CODER
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[c3444c]: / test / srs.sh

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:<<!

python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/biobert_v1.1

python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/bert-base-cased

python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext

python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/BiomedNLP-PubMedBERT-base-uncased-abstract

python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/kexinghuang_clinical

python umnsrs/umnsrs_eval.py emilyalsentzer/Bio_ClinicalBERT

python umnsrs/umnsrs_eval.py ../models/2020_eng

python umnsrs/umnsrs_eval.py ../models/2020_all

!

python umnsrs/umnsrs_eval.py ../embeddings/GoogleNews-vectors-negative300.bin

python umnsrs/umnsrs_eval.py ../embeddings/wikipedia-pubmed-and-PMC-w2v.bin

python umnsrs/umnsrs_eval.py ../embeddings/bio_nlp_vec/PubMed-shuffle-win-2.bin

python umnsrs/umnsrs_eval.py ../embeddings/bio_nlp_vec/PubMed-shuffle-win-30.bin

:<<!

python mayosrs/srs_eval.py /home/yz/pretraining_models/biobert_v1.1 bert

python mayosrs/srs_eval.py /home/yz/pretraining_models/bert-base-cased bert

python mayosrs/srs_eval.py /home/yz/pretraining_models/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext bert

python mayosrs/srs_eval.py /home/yz/pretraining_models/BiomedNLP-PubMedBERT-base-uncased-abstract 

python mayosrs/srs_eval.py /home/yz/pretraining_models/kexinghuang_clinical bert

python mayosrs/srs_eval.py emilyalsentzer/Bio_ClinicalBERT bert

python mayosrs/srs_eval.py ../models/2020_eng bert

python mayosrs/srs_eval.py ../models/2020_all bert

!

:<<!

python mayosrs/srs_eval.py /home/yz/pretraining_models/cui2vec.pkl cui

python mayosrs/srs_eval.py ../embeddings/GoogleNews-vectors-negative300.bin word

python mayosrs/srs_eval.py ../embeddings/wikipedia-pubmed-and-PMC-w2v.bin word

python mayosrs/srs_eval.py ../embeddings/bio_nlp_vec/PubMed-shuffle-win-2.bin word

python mayosrs/srs_eval.py ../embeddings/bio_nlp_vec/PubMed-shuffle-win-30.bin word

!

#python mayosrs/srs_eval.py ../embeddings/DeVine_etal_200.txt cui

#python mayosrs/srs_eval.py ../embeddings/claims_codes_hs_300.txt cui