--- a +++ b/test/srs.sh @@ -0,0 +1,33 @@ +:<<! +python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/biobert_v1.1 +python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/bert-base-cased +python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext +python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/BiomedNLP-PubMedBERT-base-uncased-abstract +python umnsrs/umnsrs_eval.py /home/yz/pretraining_models/kexinghuang_clinical +python umnsrs/umnsrs_eval.py emilyalsentzer/Bio_ClinicalBERT +python umnsrs/umnsrs_eval.py ../models/2020_eng +python umnsrs/umnsrs_eval.py ../models/2020_all +! +python umnsrs/umnsrs_eval.py ../embeddings/GoogleNews-vectors-negative300.bin +python umnsrs/umnsrs_eval.py ../embeddings/wikipedia-pubmed-and-PMC-w2v.bin +python umnsrs/umnsrs_eval.py ../embeddings/bio_nlp_vec/PubMed-shuffle-win-2.bin +python umnsrs/umnsrs_eval.py ../embeddings/bio_nlp_vec/PubMed-shuffle-win-30.bin +:<<! +python mayosrs/srs_eval.py /home/yz/pretraining_models/biobert_v1.1 bert +python mayosrs/srs_eval.py /home/yz/pretraining_models/bert-base-cased bert +python mayosrs/srs_eval.py /home/yz/pretraining_models/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext bert +python mayosrs/srs_eval.py /home/yz/pretraining_models/BiomedNLP-PubMedBERT-base-uncased-abstract +python mayosrs/srs_eval.py /home/yz/pretraining_models/kexinghuang_clinical bert +python mayosrs/srs_eval.py emilyalsentzer/Bio_ClinicalBERT bert +python mayosrs/srs_eval.py ../models/2020_eng bert +python mayosrs/srs_eval.py ../models/2020_all bert +! +:<<! +python mayosrs/srs_eval.py /home/yz/pretraining_models/cui2vec.pkl cui +python mayosrs/srs_eval.py ../embeddings/GoogleNews-vectors-negative300.bin word +python mayosrs/srs_eval.py ../embeddings/wikipedia-pubmed-and-PMC-w2v.bin word +python mayosrs/srs_eval.py ../embeddings/bio_nlp_vec/PubMed-shuffle-win-2.bin word +python mayosrs/srs_eval.py ../embeddings/bio_nlp_vec/PubMed-shuffle-win-30.bin word +! +#python mayosrs/srs_eval.py ../embeddings/DeVine_etal_200.txt cui +#python mayosrs/srs_eval.py ../embeddings/claims_codes_hs_300.txt cui \ No newline at end of file