--- a +++ b/README.md @@ -0,0 +1,30 @@ +## PERFECTO: Prediction of Extended Response and Growth Functions for Estimating Chemotherapy Outcomes in Breast Cancer + +PERFECTO Codebase: + +datasets - the experimental datasets (csv files) and their source, each in separate directories +models - codebase to run and reproduce the experiments + +Directory structure: + +models/PERFECTO/. + +- create_init_network.m - init PERFECTO network (SOM + HL) +- error_std.m - error std calculation function +- PERFECTO_core.m - main script to run PERFECTO +- model_rmse.m - RMSE calculation function +- model_sse.m - SSE calculation function +- parametrize_learning_law.m - function to parametrize PERFECTO learning +- present_tuning_curves.m - function to visualize PERFECTO SOM tuning curves +- randnum_gen.m - weight initialization function +- tumor_growth_model_fit.m - function implementing ODE models +- tumor_growth_models_eval.m - main evaluation on PERFECTO runtime +- visualize_results.m - visualize PERFECTO output and internals +- visualize_runtime.m - visualize PERFECTO runtime + + + +Usage: + +models/PERFECTO/perfecto_core.m - main function that runs PERFECTO and generates the runtime output file (mat file) +models/PERFECTO/tumor_growth_models_eval.m - evaluation and plotting function reading the PERFECTO runtime output file