multiomic_drift / Git / Commit [f48632]

multiomic_drift

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Authored by: joseph-gordon 2025-04-21

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added	.github/workflows/main.yml
added	.github/workflows/undo_push_2.yml
added	.gitignore
added	README.md
added	play_scripts/1.processing_omic_inputs/1.the_perfect_meta_aim1.Rmd
added	play_scripts/1.processing_omic_inputs/2.the_perfect_meta_aim2.Rmd
added	play_scripts/1.processing_omic_inputs/3.process_taxa_micro_data.Rmd
added	play_scripts/1.processing_omic_inputs/4.process_functional_micro_data.Rmd
added	play_scripts/1.processing_omic_inputs/5.process_micom_data.Rmd
added	play_scripts/1.processing_omic_inputs/6.process_genetic_risk_score.Rmd
added	play_scripts/1.processing_omic_inputs/all_processing.R
added	play_scripts/1.processing_omic_inputs/all_processing_long_april2.R
added	play_scripts/1.processing_omic_inputs/make_pathway_deltas.R
added	play_scripts/1.processing_omic_inputs/make_taxa_deltas.R
added	play_scripts/2.models/1.RF_meta_aim1/1.RF_meta1_SHAP_aim1.Rmd
added	play_scripts/2.models/1.RF_meta_aim1/1.RF_meta1_SHAP_aim1.html
added	play_scripts/2.models/1.RF_meta_aim1/BL_meta_12m_meta.Rmd
added	play_scripts/2.models/1.RF_meta_aim1/BL_meta_predicts_6m_BMI.Rmd
added	play_scripts/2.models/3.RF_taxa_aim1_files/3.RF_taxa_aim1.Rmd
added	play_scripts/2.models/3.RF_taxa_aim1_files/3.RF_taxa_aim1.html
added	play_scripts/2.models/4.RF_KO_func_aim1/4.RF_KO_func_aim1.Rmd
added	play_scripts/2.models/4.RF_KO_func_aim1/4.RF_KO_func_aim1.html
added	play_scripts/2.models/5.RF_combined_aim1/5.combined.Rmd
added	play_scripts/2.models/5.RF_combined_aim1/5.combined_zach_reun_BL_predicts_12mBMI.Rmd
added	play_scripts/2.models/5.RF_combined_aim1/5.combined_zachs_BL_predicts_6mBMI.Rmd

.github/workflows/main.yml Diff Switch to side-by-side view

.github/workflows/undo_push_2.yml Diff Switch to side-by-side view

.gitignore Diff Switch to side-by-side view

README.md Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/1.the_perfect_meta_aim1.Rmd Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/2.the_perfect_meta_aim2.Rmd Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/3.process_taxa_micro_data.Rmd Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/4.process_functional_micro_data.Rmd Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/5.process_micom_data.Rmd Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/6.process_genetic_risk_score.Rmd Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/all_processing.R Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/all_processing_long_april2.R Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/make_pathway_deltas.R Diff Switch to side-by-side view

play_scripts/1.processing_omic_inputs/make_taxa_deltas.R Diff Switch to side-by-side view

play_scripts/2.models/1.RF_meta_aim1/1.RF_meta1_SHAP_aim1.Rmd Diff Switch to side-by-side view

play_scripts/2.models/1.RF_meta_aim1/1.RF_meta1_SHAP_aim1.html Diff Switch to side-by-side view

play_scripts/2.models/1.RF_meta_aim1/BL_meta_12m_meta.Rmd Diff Switch to side-by-side view

play_scripts/2.models/1.RF_meta_aim1/BL_meta_predicts_6m_BMI.Rmd Diff Switch to side-by-side view

play_scripts/2.models/3.RF_taxa_aim1_files/3.RF_taxa_aim1.Rmd Diff Switch to side-by-side view

play_scripts/2.models/3.RF_taxa_aim1_files/3.RF_taxa_aim1.html Diff Switch to side-by-side view

play_scripts/2.models/4.RF_KO_func_aim1/4.RF_KO_func_aim1.Rmd Diff Switch to side-by-side view

play_scripts/2.models/4.RF_KO_func_aim1/4.RF_KO_func_aim1.html Diff Switch to side-by-side view

play_scripts/2.models/5.RF_combined_aim1/5.combined.Rmd Diff Switch to side-by-side view

play_scripts/2.models/5.RF_combined_aim1/5.combined_zach_reun_BL_predicts_12mBMI.Rmd Diff Switch to side-by-side view

play_scripts/2.models/5.RF_combined_aim1/5.combined_zachs_BL_predicts_6mBMI.Rmd Diff Switch to side-by-side view

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