--- a +++ b/src/hint/conda.yml @@ -0,0 +1,139 @@ +name: predict_drug_clinical_trial +channels: + - rdkit + - conda-forge + - anaconda + - defaults +dependencies: + - _pytorch_select=0.1=cpu_0 + - beautifulsoup4=4.9.3=pyhb0f4dca_0 + - blas=1.0=mkl + - brotlipy=0.7.0=py37haf1e3a3_1000 + - bzip2=1.0.8=h1de35cc_0 + - ca-certificates=2020.10.14=0 + - cairo=1.14.12=hc4e6be7_4 + - certifi=2020.6.20=py37_0 + - cffi=1.14.0=py37hc512035_1 + - cryptography=3.1.1=py37hddc9c9b_0 + - cycler=0.10.0=py37_0 + - decorator=4.4.2=py_0 + - fontconfig=2.13.0=h5d5b041_1 + - freetype=2.10.2=ha233b18_0 + - gettext=0.19.8.1=hb0f4f8b_2 + - glib=2.65.0=hc5f4afa_0 + - icu=58.2=h0a44026_3 + - idna=2.10=py_0 + - intel-openmp=2019.4=233 + - joblib=0.16.0=py_0 + - jpeg=9b=he5867d9_2 + - kiwisolver=1.2.0=py37h04f5b5a_0 + - lcms2=2.11=h92f6f08_0 + - libboost=1.67.0=hebc422b_4 + - libcxx=10.0.0=1 + - libedit=3.1.20191231=haf1e3a3_0 + - libffi=3.3=h0a44026_1 + - libgfortran=3.0.1=h93005f0_2 + - libiconv=1.16=h1de35cc_0 + - libpng=1.6.37=ha441bb4_0 + - libtiff=4.1.0=hcb84e12_1 + - libxml2=2.9.10=h3b9e6c8_1 + - libxslt=1.1.34=h83b36ba_0 + - llvm-openmp=10.0.0=h28b9765_0 + - lxml=4.6.1=py37h63b7cb6_0 + - lz4-c=1.9.2=h0a44026_0 + - matplotlib=3.2.2=0 + - matplotlib-base=3.2.2=py37h5670ca0_0 + - mkl=2019.4=233 + - mkl-service=2.3.0=py37hfbe908c_0 + - mkl_fft=1.1.0=py37hc64f4ea_0 + - mkl_random=1.1.1=py37h959d312_0 + - ncurses=6.2=h0a44026_1 + - networkx=2.5=py_0 + - ninja=1.9.0=py37h04f5b5a_0 + - numpy=1.18.5=py37h1da2735_0 + - numpy-base=1.18.5=py37h3304bdc_0 + - olefile=0.46=py37_0 + - openssl=1.1.1h=haf1e3a3_0 + - pandas=1.0.5=py37h959d312_0 + - pcre=8.44=hb1e8313_0 + - pillow=7.2.0=py37ha54b6ba_0 + - pip=20.1.1=py37_1 + - pixman=0.40.0=haf1e3a3_0 + - py-boost=1.67.0=py37h6440ff4_4 + - pycparser=2.20=py_0 + - pyopenssl=19.1.0=py_1 + - pyparsing=2.4.7=py_0 + - pysocks=1.7.1=py37_0 + - python=3.7.7=hf48f09d_4 + - python-dateutil=2.8.1=py_0 + - python-wget=3.2=py_0 + - python_abi=3.7=1_cp37m + - pytz=2020.1=py_0 + - rdkit=2020.03.3.0=py37h65625ec_1 + - readline=8.0=h1de35cc_0 + - scikit-learn=0.23.1=py37h603561c_0 + - seaborn=0.11.0=py_0 + - setuptools=47.3.1=py37_0 + - six=1.15.0=py_0 + - soupsieve=2.0.1=py_0 + - sqlite=3.32.3=hffcf06c_0 + - threadpoolctl=2.1.0=pyh5ca1d4c_0 + - tk=8.6.10=hb0a8c7a_0 + - tornado=6.0.4=py37h1de35cc_1 + - wget=1.20.1=h051b688_0 + - wheel=0.34.2=py37_0 + - xlrd=1.2.0=py37_0 + - xz=5.2.5=h1de35cc_0 + - zlib=1.2.11=h1de35cc_3 + - zstd=1.4.4=h1990bb4_3 + - pip: + - absl-py==0.9.0 + - astunparse==1.6.3 + - biobert-embedding==0.1.2 + - boto3==1.14.16 + - botocore==1.17.16 + - cachetools==4.1.1 + - chardet==3.0.4 + - cssselect==1.1.0 + - docutils==0.15.2 + - drugdataloader==0.1 + - future==0.18.2 + - gast==0.3.3 + - google-auth==1.18.0 + - google-auth-oauthlib==0.4.1 + - google-pasta==0.2.0 + - graphics-py==5.0.1.post1 + - grpcio==1.30.0 + - h5py==2.10.0 + - html2json==0.2.4.1 + - icd10-cm==0.0.4 + - importlib-metadata==1.7.0 + - jmespath==0.10.0 + - keras-preprocessing==1.1.2 + - markdown==3.2.2 + - oauthlib==3.1.0 + - opt-einsum==3.2.1 + - protobuf==3.12.2 + - pyasn1==0.4.8 + - pyasn1-modules==0.2.8 + - pypdf2==1.26.0 + - pyquery==1.4.1 + - pytorch-pretrained-bert==0.6.2 + - regex==2020.6.8 + - requests==2.24.0 + - requests-oauthlib==1.3.0 + - rsa==4.6 + - s3transfer==0.3.3 + - scipy==1.4.1 + - tensorboard==2.2.2 + - tensorboard-plugin-wit==1.7.0 + - tensorflow==2.2.0 + - tensorflow-estimator==2.2.0 + - termcolor==1.1.0 + - torch==1.2.0 + - tqdm==4.47.0 + - urllib3==1.25.9 + - werkzeug==1.0.1 + - wrapt==1.12.1 + - zipp==3.1.0 +