--- a +++ b/processing/MACCROBAT/28353596.ann @@ -0,0 +1,325 @@ +T1 Age 2 13 47-year-old +T2 Sex 14 20 female +T3 Clinical_event 29 38 presented +E1 Clinical_event:T3 +T4 Sign_symptom 63 67 pain +E2 Sign_symptom:T4 +T5 Biological_structure 75 85 chest wall +T6 Biological_structure 87 91 back +T7 Sign_symptom 136 151 muscle weakness +E3 Sign_symptom:T7 +T8 Detailed_description 39 62 progressively worsening +R1 MODIFY Arg1:T8 Arg2:E2 +R2 MODIFY Arg1:T5 Arg2:E2 +R3 MODIFY Arg1:T6 Arg2:E2 +T9 Biological_structure 97 124 bilateral lower extremities +R4 MODIFY Arg1:T9 Arg2:E2 +T10 Family_history 157 215 did not have a family history of bone disease or fractures +T11 Diagnostic_procedure 217 237 Physical examination +E4 Diagnostic_procedure:T11 +T12 Lab_value 242 254 unremarkable +R5 MODIFY Arg1:T12 Arg2:E4 +T13 Detailed_description 255 296 excluding bone and muscular abnormalities +R6 MODIFY Arg1:T13 Arg2:E4 +T14 Diagnostic_procedure 303 315 scintigraphy +E5 Diagnostic_procedure:T14 +T15 Biological_structure 298 302 Bone +R7 MODIFY Arg1:T15 Arg2:E5 +T16 Detailed_description 316 357 using technetium-99m methylenediphosphate +R8 MODIFY Arg1:T16 Arg2:E5 +T17 Sign_symptom 375 381 uptake +E6 Sign_symptom:T17 +T18 Biological_structure 389 397 shoulder +T19 Biological_structure 399 412 multiple ribs +T20 Biological_structure 414 440 thoracic and lumbar spines +R9 MODIFY Arg1:T20 Arg2:E6 +R10 MODIFY Arg1:T18 Arg2:E6 +R11 MODIFY Arg1:T19 Arg2:E6 +T21 Biological_structure 442 469 bilateral sacroiliac joints +R12 MODIFY Arg1:T21 Arg2:E6 +T22 Biological_structure 471 481 left ilium +R13 MODIFY Arg1:T22 Arg2:E6 +T23 Biological_structure 487 496 left foot +R14 MODIFY Arg1:T23 Arg2:E6 +T24 Diagnostic_procedure 512 523 radiographs +E7 Diagnostic_procedure:T24 +T25 Detailed_description 506 511 Plain +R15 MODIFY Arg1:T25 Arg2:E7 +T26 Disease_disorder 533 545 osteoporosis +E8 Disease_disorder:T26 +T27 Biological_structure 556 581 thoracic and lumbar spine +R16 MODIFY Arg1:T27 Arg2:E8 +T28 Sign_symptom 593 604 compression +E9 Sign_symptom:T28 +T29 Biological_structure 615 629 several spines +R17 MODIFY Arg1:T29 Arg2:E9 +T30 Diagnostic_procedure 659 685 magnetic resonance imaging +E10 Diagnostic_procedure:T30 +T31 Diagnostic_procedure 690 709 computed tomography +E11 Diagnostic_procedure:T31 +T32 Diagnostic_procedure 711 713 CT +E12 Diagnostic_procedure:T32 +R18 IDENTICAL Arg1:E12 Arg2:E11 +T33 Diagnostic_procedure 734 743 bone mass +E13 Diagnostic_procedure:T33 +T34 Lab_value 724 733 Decreased +R19 MODIFY Arg1:T34 Arg2:E13 +T35 Biological_structure 765 777 lumbar spine +T36 Biological_structure 795 807 femoral neck +T37 Biological_structure 829 832 hip +T38 Lab_value 779 792 T-score: −3.4 +T39 Lab_value 809 822 T-score: −3.1 +T40 Lab_value 834 847 T-score: −3.5 +R20 MODIFY Arg1:T35 Arg2:T38 +R21 MODIFY Arg1:T36 Arg2:T39 +R22 MODIFY Arg1:T37 Arg2:T40 +R23 MODIFY Arg1:T38 Arg2:E13 +R24 MODIFY Arg1:T39 Arg2:E13 +R25 MODIFY Arg1:T40 Arg2:E13 +T41 Sign_symptom 911 927 hypophosphatemia +E14 Sign_symptom:T41 +T42 Sign_symptom 929 940 hypokalemia +E15 Sign_symptom:T42 +T43 Sign_symptom 942 954 hypouricemia +E16 Sign_symptom:T43 +T44 Diagnostic_procedure 974 977 ALP +E17 Diagnostic_procedure:T44 +T45 Diagnostic_procedure 979 993 C-telopeptides +E18 Diagnostic_procedure:T45 +T46 Diagnostic_procedure 998 1006 chloride +E19 Diagnostic_procedure:T46 +T47 Lab_value 956 964 elevated +R26 MODIFY Arg1:T47 Arg2:E17 +R27 MODIFY Arg1:T47 Arg2:E18 +R28 MODIFY Arg1:T47 Arg2:E19 +T48 Diagnostic_procedure 1022 1052 carbon dioxide combining power +E20 Diagnostic_procedure:T48 +T49 Lab_value 1012 1021 decreased +R29 MODIFY Arg1:T49 Arg2:E20 +T50 Diagnostic_procedure 1058 1068 urinalysis +E21 Diagnostic_procedure:T50 +T51 Diagnostic_procedure 1085 1087 pH +E22 Diagnostic_procedure:T51 +T52 Lab_value 1080 1084 high +R30 MODIFY Arg1:T52 Arg2:E22 +R31 SUB_PROCEDURE Arg1:E22 Arg2:E21 +T53 Diagnostic_procedure 1114 1123 potassium +E23 Diagnostic_procedure:T53 +T54 Diagnostic_procedure 1148 1164 specific gravity +E24 Diagnostic_procedure:T54 +T55 Diagnostic_procedure 1166 1174 chlorine +E25 Diagnostic_procedure:T55 +T56 Diagnostic_procedure 1180 1189 phosphate +E26 Diagnostic_procedure:T56 +T57 Lab_value 1095 1104 increased +R32 MODIFY Arg1:T57 Arg2:E23 +T58 Lab_value 1129 1138 decreased +R33 MODIFY Arg1:T58 Arg2:E24 +R34 MODIFY Arg1:T58 Arg2:E25 +R35 MODIFY Arg1:T58 Arg2:E26 +R36 SUB_PROCEDURE Arg1:E23 Arg2:E21 +R37 SUB_PROCEDURE Arg1:E24 Arg2:E21 +R38 SUB_PROCEDURE Arg1:E25 Arg2:E21 +R39 SUB_PROCEDURE Arg1:E26 Arg2:E21 +T59 Sign_symptom 1202 1212 glycosuria +E27 Sign_symptom:T59 +T60 Sign_symptom 1217 1228 proteinuria +E28 Sign_symptom:T60 +T61 Detailed_description 1191 1201 Persistent +R40 MODIFY Arg1:T61 Arg2:E27 +T62 Diagnostic_procedure 1267 1272 HbA1c +E29 Diagnostic_procedure:T62 +T63 Lab_value 1260 1266 normal +R41 MODIFY Arg1:T63 Arg2:E29 +T64 Diagnostic_procedure 1277 1291 plasma glucose +E30 Diagnostic_procedure:T64 +R42 MODIFY Arg1:T63 Arg2:E30 +T65 Diagnostic_procedure 1305 1320 laboratory test +E31 Diagnostic_procedure:T65 +T66 Diagnostic_procedure 1339 1355 thyroid function +E32 Diagnostic_procedure:T66 +T67 Diagnostic_procedure 1362 1387 serum parathyroid hormone +E33 Diagnostic_procedure:T67 +T68 Diagnostic_procedure 1389 1408 25-hydroxyvitamin D +E34 Diagnostic_procedure:T68 +T69 Diagnostic_procedure 1414 1437 protein electrophoresis +E35 Diagnostic_procedure:T69 +T70 Lab_value 1443 1462 within normal range +R43 MODIFY Arg1:T70 Arg2:E35 +R44 MODIFY Arg1:T70 Arg2:E34 +R45 MODIFY Arg1:T70 Arg2:E33 +R46 MODIFY Arg1:T70 Arg2:E32 +R47 SUB_PROCEDURE Arg1:E32 Arg2:E31 +R48 SUB_PROCEDURE Arg1:E33 Arg2:E31 +R49 SUB_PROCEDURE Arg1:E34 Arg2:E31 +R50 SUB_PROCEDURE Arg1:E35 Arg2:E31 +T71 Diagnostic_procedure 1484 1503 serum tumor markers +E36 Diagnostic_procedure:T71 +T72 Lab_value 1509 1517 negative +R51 MODIFY Arg1:T72 Arg2:E36 +T73 Diagnostic_procedure 1578 1611 serum fibroblast growth factor 23 +E37 Diagnostic_procedure:T73 +A1 POLARITY E37 NEG +T74 Disease_disorder 1644 1646 HO +E38 Disease_disorder:T74 +#1 AnnotatorNotes E38 hypophosphatemic osteomalacia +T75 Diagnostic_procedure 1696 1715 computed tomography +E39 Diagnostic_procedure:T75 +T76 Diagnostic_procedure 1648 1695 fluorodeoxyglucose positron emission tomography +E40 Diagnostic_procedure:T76 +T77 Diagnostic_procedure 1717 1728 18F-FDG PET +E41 Diagnostic_procedure:T77 +T78 Diagnostic_procedure 1729 1731 CT +E42 Diagnostic_procedure:T78 +R52 IDENTICAL Arg1:E41 Arg2:E40 +R53 IDENTICAL Arg1:E42 Arg2:E39 +T79 Diagnostic_procedure 1775 1787 scintigraphy +E43 Diagnostic_procedure:T79 +T80 Detailed_description 1737 1762 technetium-99m octreotide +T81 Detailed_description 1764 1773 99mTc-OCT +R54 IDENTICAL Arg1:T81 Arg2:T80 +R55 MODIFY Arg1:T80 Arg2:E43 +T82 Sign_symptom 1843 1848 tumor +E44 Sign_symptom:T82 +A2 POLARITY E44 UNCERTAIN +T83 Detailed_description 1826 1832 occult +T84 Detailed_description 1833 1842 causative +R56 MODIFY Arg1:T84 Arg2:E44 +R57 MODIFY Arg1:T83 Arg2:E44 +T85 Coreference 1880 1893 these 2 tests +E45 Coreference:T85 +R58 IDENTICAL Arg1:E45 Arg2:E43 +R59 IDENTICAL Arg1:E45 Arg2:E40 +R60 IDENTICAL Arg1:E45 Arg2:E39 +T86 Lab_value 1899 1907 negative +R61 MODIFY Arg1:T86 Arg2:E45 +T87 Sign_symptom 1925 1931 uptake +E46 Sign_symptom:T87 +T88 Biological_structure 1939 1950 seventh rib +T89 Severity 1920 1924 mild +R62 MODIFY Arg1:T89 Arg2:E46 +R63 MODIFY Arg1:T88 Arg2:E46 +T90 Diagnostic_procedure 1964 1967 PET +E47 Diagnostic_procedure:T90 +T91 Diagnostic_procedure 1968 1970 CT +E48 Diagnostic_procedure:T91 +T92 Sign_symptom 2017 2023 lesion +E49 Sign_symptom:T92 +A3 POLARITY E49 NEG +T93 Detailed_description 2006 2016 neoplastic +R64 MODIFY Arg1:T93 Arg2:E49 +T94 Diagnostic_procedure 2068 2093 immunological examination +E50 Diagnostic_procedure:T94 +T95 Diagnostic_procedure 2119 2128 serum IgG +E51 Diagnostic_procedure:T95 +T96 Diagnostic_procedure 2130 2133 IgM +E52 Diagnostic_procedure:T96 +T97 Diagnostic_procedure 2139 2142 IgA +E53 Diagnostic_procedure:T97 +R65 SUB_PROCEDURE Arg1:E51 Arg2:E50 +R66 SUB_PROCEDURE Arg1:E52 Arg2:E50 +R67 SUB_PROCEDURE Arg1:E53 Arg2:E50 +T98 Diagnostic_procedure 2164 2184 antinuclear antibody +E54 Diagnostic_procedure:T98 +T99 Lab_value 2101 2109 elevated +R68 MODIFY Arg1:T99 Arg2:E51 +R69 MODIFY Arg1:T99 Arg2:E52 +R70 MODIFY Arg1:T99 Arg2:E53 +T100 Diagnostic_procedure 2186 2203 anti-SSA antibody +E55 Diagnostic_procedure:T100 +T101 Diagnostic_procedure 2209 2225 rheumatic factor +E56 Diagnostic_procedure:T101 +T102 Lab_value 2155 2163 positive +R71 MODIFY Arg1:T102 Arg2:E54 +R72 MODIFY Arg1:T102 Arg2:E55 +R73 MODIFY Arg1:T102 Arg2:E56 +R74 SUB_PROCEDURE Arg1:E54 Arg2:E50 +R75 SUB_PROCEDURE Arg1:E55 Arg2:E50 +R76 SUB_PROCEDURE Arg1:E56 Arg2:E50 +T103 Diagnostic_procedure 2241 2254 Schirmer test +E57 Diagnostic_procedure:T103 +T104 Lab_value 2259 2267 abnormal +R77 MODIFY Arg1:T104 Arg2:E57 +T105 Diagnostic_procedure 2276 2282 biopsy +E58 Diagnostic_procedure:T105 +T106 Biological_structure 2272 2275 lip +R78 MODIFY Arg1:T106 Arg2:E58 +T107 Disease_disorder 2310 2312 SS +E59 Disease_disorder:T107 +#2 AnnotatorNotes E59 Sjogren's syndrome +T108 Disease_disorder 2366 2368 HO +E60 Disease_disorder:T108 +T109 Disease_disorder 2382 2384 SS +E61 Disease_disorder:T109 +T110 Therapeutic_procedure 2416 2430 alkalinization +E62 Therapeutic_procedure:T110 +T111 Medication 2432 2439 citrate +E63 Medication:T111 +T112 Dosage 2440 2447 4 g/day +R79 MODIFY Arg1:T112 Arg2:E63 +T113 Medication 2452 2469 potassium citrate +E64 Medication:T113 +T114 Dosage 2470 2477 3 g/day +R80 MODIFY Arg1:T114 Arg2:E64 +T115 Duration 2482 2489 2 weeks +E65 Duration:T115 +T116 Medication 2492 2500 steroids +E66 Medication:T116 +R81 SUB_PROCEDURE Arg1:E63 Arg2:E62 +R82 SUB_PROCEDURE Arg1:E64 Arg2:E62 +T117 Medication 2502 2512 prednisone +E67 Medication:T117 +T118 Dosage 2513 2522 20 mg/day +T119 Duration 2527 2534 1 month +E68 Duration:T119 +R83 MODIFY Arg1:T118 Arg2:E67 +R84 SUB_PROCEDURE Arg1:E67 Arg2:E66 +T120 Dosage 2536 2545 10 mg/day +R85 MODIFY Arg1:T120 Arg2:E67 +T121 Duration 2550 2558 4 months +E69 Duration:T121 +R86 MODIFY Arg1:E68 Arg2:T118 +R87 MODIFY Arg1:E69 Arg2:T120 +R88 MODIFY Arg1:E65 Arg2:T114 +T122 Medication 2561 2578 neutral phosphate +E70 Medication:T122 +T123 Dosage 2580 2589 1.0 g/day +R89 MODIFY Arg1:T123 Arg2:E70 +T124 Duration 2594 2602 5 months +E71 Duration:T124 +R90 MODIFY Arg1:E71 Arg2:T123 +T125 Medication 2605 2624 calcium supplements +E72 Medication:T125 +T126 Dosage 2626 2636 600 mg/day +R91 MODIFY Arg1:T126 Arg2:E72 +T127 Duration 2641 2649 5 months +E73 Duration:T127 +R92 MODIFY Arg1:E73 Arg2:T126 +T128 Medication 2670 2689 activated vitamin D +E74 Medication:T128 +T129 Dosage 2691 2700 0.5 g/day +T130 Duration 2705 2713 5 months +E75 Duration:T130 +R93 MODIFY Arg1:T129 Arg2:E74 +R94 MODIFY Arg1:E75 Arg2:T129 +T131 Sign_symptom 2728 2737 recovered +E76 Sign_symptom:T131 +T132 Sign_symptom 2765 2769 pain +E77 Sign_symptom:T132 +A4 POLARITY E77 NEG +T133 Diagnostic_procedure 2784 2800 serum phosphorus +E78 Diagnostic_procedure:T133 +T134 Lab_value 2774 2783 increased +R95 MODIFY Arg1:T134 Arg2:E78 +R96 AFTER Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 +R97 BEFORE Arg1:E3 Arg2:E4 +* OVERLAP E4 E5 E6 E7 E8 E9 E10 E11 E13 E14 E15 E16 E17 E18 E19 E20 E21 E27 E28 E29 E30 E31 E36 E37 +R98 BEFORE Arg1:E37 Arg2:E38 +* OVERLAP E38 E40 E39 E43 E44 E45 E46 E47 E48 E49 E50 +R99 BEFORE Arg1:E50 Arg2:E57 +* OVERLAP E57 E58 E59 +R100 BEFORE Arg1:E59 Arg2:E60 +* OVERLAP E60 E61 E62 E65 E66 E68 E69 E70 E71 E72 E73 E74 E75 +R101 BEFORE Arg1:E75 Arg2:E76 +* OVERLAP E76 E77 E78