--- a +++ b/processing/MACCROBAT/28353569.ann @@ -0,0 +1,400 @@ +T1 Age 2 13 41-year-old +T2 Sex 14 17 man +T3 History 36 46 alcoholism +T4 Duration 51 59 10 years +E1 Duration:T4 +R1 MODIFY Arg1:E1 Arg2:T3 +T5 History 64 69 sober +T6 Duration 78 90 last 3 years +E2 Duration:T6 +R2 MODIFY Arg1:E2 Arg2:T5 +T7 History 92 124 recurrent alcoholic pancreatitis +T8 History 130 152 no known liver disease +T9 Sign_symptom 189 200 hematemesis +E3 Sign_symptom:T9 +T10 Detailed_description 169 185 several episodes +R3 MODIFY Arg1:T10 Arg2:E3 +T11 Sign_symptom 215 219 pain +E4 Sign_symptom:T11 +T12 Biological_structure 205 214 abdominal +R4 MODIFY Arg1:T12 Arg2:E4 +T13 Duration 224 230 2 days +E5 Duration:T13 +R5 MODIFY Arg1:E5 Arg2:E4 +R6 MODIFY Arg1:E5 Arg2:E3 +T14 Diagnostic_procedure 232 258 Esophagogastroduodenoscopy +E6 Diagnostic_procedure:T14 +T15 Diagnostic_procedure 260 263 EGD +E7 Diagnostic_procedure:T15 +R7 IDENTICAL Arg1:E7 Arg2:E6 +T16 Date 276 291 3 years earlier +E8 Date:T16 +R8 MODIFY Arg1:E8 Arg2:E6 +T17 Sign_symptom 306 310 pain +E9 Sign_symptom:T17 +T18 Biological_structure 296 305 abdominal +R9 MODIFY Arg1:T18 Arg2:E9 +R10 MODIFY Arg1:E8 Arg2:E9 +T19 Sign_symptom 339 346 varices +E10 Sign_symptom:T19 +T20 Sign_symptom 356 363 varices +E11 Sign_symptom:T20 +T21 Disease_disorder 385 396 gastropathy +E12 Disease_disorder:T21 +T22 Sign_symptom 410 417 lesions +E13 Sign_symptom:T22 +T23 Biological_structure 328 338 esophageal +R11 MODIFY Arg1:T23 Arg2:E10 +A1 POLARITY E10 NEG +T24 Biological_structure 348 355 gastric +R12 MODIFY Arg1:T24 Arg2:E11 +A2 POLARITY E11 NEG +T25 Detailed_description 372 384 hypertensive +T26 Biological_structure 365 371 portal +R13 MODIFY Arg1:T25 Arg2:E12 +R14 MODIFY Arg1:T26 Arg2:E12 +A3 POLARITY E12 NEG +T27 Biological_structure 407 409 GI +R15 MODIFY Arg1:T27 Arg2:E13 +A4 POLARITY E13 NEG +T28 Diagnostic_procedure 419 439 Physical examination +E14 Diagnostic_procedure:T28 +T29 Diagnostic_procedure 451 465 blood pressure +E15 Diagnostic_procedure:T29 +T30 Lab_value 468 480 100/60 mm Hg +R16 MODIFY Arg1:T30 Arg2:E15 +T31 Diagnostic_procedure 482 487 pulse +E16 Diagnostic_procedure:T31 +T33 Sign_symptom 507 515 jaundice +E17 Sign_symptom:T33 +A5 POLARITY E17 NEG +T35 Diagnostic_procedure 682 700 Rectal examination +E18 Diagnostic_procedure:T35 +T32 Sign_symptom 520 553 stigmata of chronic liver disease +E19 Sign_symptom:T32 +A6 POLARITY E19 NEG +T34 Sign_symptom 617 627 tenderness +E20 Sign_symptom:T34 +A7 POLARITY E20 NEG +T36 Detailed_description 609 616 rebound +R17 MODIFY Arg1:T36 Arg2:E20 +T37 Biological_structure 562 569 abdomen +R18 MODIFY Arg1:T37 Arg2:E20 +T38 Sign_symptom 642 647 bruit +E21 Sign_symptom:T38 +A8 POLARITY E21 NEG +T39 Biological_structure 632 641 abdominal +R19 MODIFY Arg1:T39 Arg2:E21 +T40 Biological_structure 666 675 abdominal +T41 Detailed_description 656 665 pulsatile +T42 Sign_symptom 676 680 mass +E22 Sign_symptom:T42 +A9 POLARITY E22 NEG +R20 MODIFY Arg1:T41 Arg2:E22 +R21 MODIFY Arg1:T40 Arg2:E22 +T43 Date 2654 2671 Eight weeks later +E23 Date:T43 +T44 Diagnostic_procedure 2698 2708 hemoglobin +E24 Diagnostic_procedure:T44 +T45 Lab_value 2691 2697 stable +R22 MODIFY Arg1:T45 Arg2:E24 +T46 Sign_symptom 2734 2742 bleeding +E25 Sign_symptom:T46 +A10 POLARITY E25 NEG +T47 Biological_structure 2731 2733 GI +R23 MODIFY Arg1:T47 Arg2:E25 +T48 Sign_symptom 557 561 soft +E26 Sign_symptom:T48 +R24 MODIFY Arg1:T37 Arg2:E26 +T49 Sign_symptom 591 601 tenderness +E27 Sign_symptom:T49 +T50 Biological_structure 580 590 epigastric +R25 MODIFY Arg1:T50 Arg2:E27 +T51 Severity 575 579 mild +R26 MODIFY Arg1:T51 Arg2:E27 +T52 Sign_symptom 716 722 melena +E28 Sign_symptom:T52 +T53 Diagnostic_procedure 724 740 Laboratory tests +E29 Diagnostic_procedure:T53 +T54 Diagnostic_procedure 750 760 hemoglobin +E30 Diagnostic_procedure:T54 +T55 Lab_value 763 772 12.5 g/dL +R27 MODIFY Arg1:T55 Arg2:E30 +T56 Diagnostic_procedure 774 783 platelets +E31 Diagnostic_procedure:T56 +T57 Lab_value 786 796 301,000/mL +R28 MODIFY Arg1:T57 Arg2:E31 +T58 Diagnostic_procedure 798 801 INR +E32 Diagnostic_procedure:T58 +T59 Diagnostic_procedure 803 833 international normalized ratio +E33 Diagnostic_procedure:T59 +R29 IDENTICAL Arg1:E33 Arg2:E32 +T60 Lab_value 837 840 1.0 +R30 MODIFY Arg1:T60 Arg2:E32 +T61 Diagnostic_procedure 842 861 blood urea nitrogen +E34 Diagnostic_procedure:T61 +T62 Lab_value 864 872 20 mg/dL +R31 MODIFY Arg1:T62 Arg2:E34 +T63 Diagnostic_procedure 878 888 creatinine +E35 Diagnostic_procedure:T63 +T64 Diagnostic_procedure 1090 1100 hemoglobin +E36 Diagnostic_procedure:T64 +T65 Lab_value 1101 1117 declined acutely +T66 Lab_value 1121 1129 9.3 g/dL +R32 MODIFY Arg1:T65 Arg2:E36 +R33 MODIFY Arg1:T66 Arg2:E36 +T67 Diagnostic_procedure 1147 1170 computerized tomography +E37 Diagnostic_procedure:T67 +T68 Diagnostic_procedure 1172 1174 CT +E38 Diagnostic_procedure:T68 +R34 IDENTICAL Arg1:E38 Arg2:E37 +T69 Biological_structure 1131 1146 Abdomino-pelvic +R35 MODIFY Arg1:T69 Arg2:E37 +T70 Detailed_description 1182 1203 intravenous contrast, +R36 MODIFY Arg1:T70 Arg2:E37 +T71 Distance 1215 1219 5-cm +T72 Detailed_description 1226 1235 irregular +T73 Sign_symptom 1263 1267 mass +E39 Sign_symptom:T73 +T74 Biological_structure 1237 1247 pancreatic +T75 Biological_structure 1248 1262 peripancreatic +R37 MODIFY Arg1:T75 Arg2:E39 +R38 MODIFY Arg1:T74 Arg2:E39 +R39 MODIFY Arg1:T72 Arg2:E39 +R40 MODIFY Arg1:T71 Arg2:E39 +T76 Sign_symptom 1269 1280 compressing +E40 Sign_symptom:T76 +R41 CAUSE Arg1:E39 Arg2:E40 +T77 Biological_structure 1290 1321 lesser curvature of the stomach +R42 MODIFY Arg1:T77 Arg2:E40 +T78 Biological_structure 1330 1332 SV +#1 AnnotatorNotes T78 splenic vein +R43 MODIFY Arg1:T78 Arg2:E40 +T79 Diagnostic_procedure 1355 1366 portal vein +E41 Diagnostic_procedure:T79 +T80 Diagnostic_procedure 1379 1395 liver parenchyma +E42 Diagnostic_procedure:T80 +T81 Lab_value 1372 1378 normal +R44 MODIFY Arg1:T81 Arg2:E42 +T82 Lab_value 1348 1354 normal +R45 MODIFY Arg1:T82 Arg2:E41 +T83 Sign_symptom 1404 1415 compression +E43 Sign_symptom:T83 +T84 Biological_structure 1401 1403 SV +R46 MODIFY Arg1:T84 Arg2:E43 +T85 Lab_value 1420 1452 pathophysiologically significant +R47 MODIFY Arg1:T85 Arg2:E43 +T86 Sign_symptom 1481 1491 dilatation +E44 Sign_symptom:T86 +T87 Biological_structure 1469 1480 proximal SV +R48 MODIFY Arg1:T87 Arg2:E44 +T88 Diagnostic_procedure 1493 1496 EGD +E45 Diagnostic_procedure:T88 +T89 Biological_structure 1513 1529 proximal stomach +R49 MODIFY Arg1:T89 Arg2:E45 +T90 Disease_disorder 1635 1666 portal hypertensive gastropathy +E46 Disease_disorder:T90 +T91 Sign_symptom 1581 1588 network +E47 Sign_symptom:T91 +T92 Texture 1594 1611 snakeskin pattern +R50 MODIFY Arg1:T92 Arg2:E47 +T93 Biological_structure 1572 1579 mucosal +T94 Shape 1561 1570 polygonal +R51 MODIFY Arg1:T94 Arg2:E47 +R52 MODIFY Arg1:T93 Arg2:E47 +T95 Color 1549 1559 pale-white +T96 Detailed_description 1532 1536 fine +T97 Detailed_description 1538 1547 reticular +R53 MODIFY Arg1:T95 Arg2:E47 +R54 MODIFY Arg1:T97 Arg2:E47 +R55 MODIFY Arg1:T96 Arg2:E47 +T98 Sign_symptom 1685 1691 oozing +E48 Sign_symptom:T98 +T99 Sign_symptom 1718 1729 blood clots +E49 Sign_symptom:T99 +T100 Texture 1703 1716 coffee-ground +R56 MODIFY Arg1:T100 Arg2:E49 +T101 Severity 1693 1702 extensive +R57 MODIFY Arg1:T101 Arg2:E49 +T102 Biological_structure 1737 1744 stomach +R58 MODIFY Arg1:T102 Arg2:E49 +T103 Sign_symptom 1779 1786 varices +E50 Sign_symptom:T103 +T104 Sign_symptom 1795 1824 stigmata of recent hemorrhage +E51 Sign_symptom:T104 +A11 POLARITY E51 NEG +T105 Sign_symptom 1826 1829 SRH +E52 Sign_symptom:T105 +R59 IDENTICAL Arg1:E52 Arg2:E51 +T106 Biological_structure 1752 1759 gastric +T107 Biological_structure 1760 1767 cardial +T108 Biological_structure 1772 1778 fundal +R60 MODIFY Arg1:T107 Arg2:T106 +R61 MODIFY Arg1:T108 Arg2:T106 +R62 MODIFY Arg1:T106 Arg2:E50 +T109 Sign_symptom 1850 1857 varices +E53 Sign_symptom:T109 +A12 POLARITY E53 NEG +T110 Biological_structure 1839 1849 esophageal +R63 MODIFY Arg1:T110 Arg2:E53 +T111 Coreference 1882 1886 mass +E54 Coreference:T111 +R64 IDENTICAL Arg1:E54 Arg2:E39 +T112 Sign_symptom 1911 1916 bulge +E55 Sign_symptom:T112 +R65 CAUSE Arg1:E54 Arg2:E55 +T113 Shape 1905 1910 round +R66 MODIFY Arg1:T113 Arg2:E55 +T114 Detailed_description 1898 1903 large +R67 MODIFY Arg1:T114 Arg2:E55 +T115 Biological_structure 1917 1970 extending into the lumen of the proximal gastric body +T116 Biological_structure 1981 1997 lesser curvature +R68 MODIFY Arg1:T116 Arg2:T115 +R69 MODIFY Arg1:T115 Arg2:E55 +T117 Diagnostic_procedure 2007 2051 Magnetic resonance cholangio-pancreatography +E56 Diagnostic_procedure:T117 +T118 Diagnostic_procedure 2053 2057 MRCP +E57 Diagnostic_procedure:T118 +R70 IDENTICAL Arg1:E57 Arg2:E56 +T119 Distance 2070 2074 5-cm +T120 Detailed_description 2081 2090 enhancing +T121 Sign_symptom 2101 2105 mass +E58 Sign_symptom:T121 +T122 Biological_structure 2092 2100 vascular +R71 MODIFY Arg1:T122 Arg2:E58 +R72 MODIFY Arg1:T120 Arg2:E58 +R73 MODIFY Arg1:T119 Arg2:E58 +T123 Biological_structure 2113 2133 arising from the LGA +T124 Biological_structure 2146 2209 between the gastric lesser curvature and distal pancreatic body +R74 MODIFY Arg1:T123 Arg2:E58 +R75 MODIFY Arg1:T124 Arg2:E58 +T125 Sign_symptom 2211 2222 compressing +E59 Sign_symptom:T125 +T126 Sign_symptom 2236 2247 compressing +E60 Sign_symptom:T126 +T127 Biological_structure 2227 2234 stomach +R76 MODIFY Arg1:T127 Arg2:E59 +T128 Biological_structure 2252 2261 middle SV +R77 MODIFY Arg1:T128 Arg2:E60 +T129 Sign_symptom 2286 2302 collateral veins +E61 Sign_symptom:T129 +T130 Detailed_description 2280 2285 large +R78 MODIFY Arg1:T130 Arg2:E61 +T131 Biological_structure 2316 2318 SV +T132 Biological_structure 2328 2352 superior mesenteric vein +R79 MODIFY Arg1:T131 Arg2:E61 +R80 MODIFY Arg1:T132 Arg2:E61 +T133 Diagnostic_procedure 2376 2386 ultrasound +E62 Diagnostic_procedure:T133 +T134 Biological_structure 2366 2375 Abdominal +R81 MODIFY Arg1:T134 Arg2:E62 +T135 Detailed_description 2392 2407 Doppler studies +R82 MODIFY Arg1:T135 Arg2:E62 +T136 Disease_disorder 2496 2498 PA +E63 Disease_disorder:T136 +#2 AnnotatorNotes E63 pseudoaneurysm +T137 Detailed_description 2490 2495 large +R83 MODIFY Arg1:T137 Arg2:E63 +T138 Detailed_description 2421 2426 large +T139 Detailed_description 2428 2437 turbulent +T140 Sign_symptom 2447 2451 flow +E64 Sign_symptom:T140 +T141 Biological_structure 2438 2446 arterial +R84 MODIFY Arg1:T141 Arg2:E64 +R85 MODIFY Arg1:T139 Arg2:E64 +R86 MODIFY Arg1:T138 Arg2:E64 +T142 Coreference 2471 2475 mass +E65 Coreference:T142 +R87 IDENTICAL Arg1:E65 Arg2:E58 +T143 Biological_structure 2462 2470 vascular +R88 MODIFY Arg1:T143 Arg2:E65 +T144 Diagnostic_procedure 2517 2528 arteriogram +E66 Diagnostic_procedure:T144 +T145 Detailed_description 2508 2516 Visceral +R89 MODIFY Arg1:T145 Arg2:E66 +A13 POLARITY E63 UNCERTAIN +T146 Disease_disorder 2556 2558 PA +E67 Disease_disorder:T146 +T147 Volume 2538 2555 5.3 × 2.2-cm-wide +R90 MODIFY Arg1:T147 Arg2:E67 +T148 Biological_structure 2574 2584 LGA branch +#3 AnnotatorNotes T148 left gastric artery +R91 MODIFY Arg1:T148 Arg2:E67 +T149 Therapeutic_procedure 2605 2614 embolized +E68 Therapeutic_procedure:T149 +T150 Therapeutic_procedure 2619 2627 occluded +E69 Therapeutic_procedure:T150 +T151 Detailed_description 2633 2643 microcoils +R92 MODIFY Arg1:T151 Arg2:E69 +R93 MODIFY Arg1:T151 Arg2:E68 +T152 Diagnostic_procedure 2763 2774 angiography +E70 Diagnostic_procedure:T152 +T153 Detailed_description 2760 2762 CT +R94 MODIFY Arg1:T153 Arg2:E70 +T154 Biological_structure 2744 2759 Abdomino-pelvic +R95 MODIFY Arg1:T154 Arg2:E70 +T155 Disease_disorder 2792 2794 PA +E71 Disease_disorder:T155 +T156 Detailed_description 2831 2860 contained numerous microcoils +R96 MODIFY Arg1:T156 Arg2:E71 +T157 Lab_value 2808 2829 decreased in diameter +R97 MODIFY Arg1:T157 Arg2:E71 +T158 Detailed_description 2870 2883 no blood flow +R98 MODIFY Arg1:T158 Arg2:E71 +T159 Clinical_event 154 163 presented +E72 Clinical_event:T159 +R99 AFTER Arg1:E72 Arg2:E3 +* OVERLAP E3 E4 E5 +R100 AFTER Arg1:E5 Arg2:E6 +* OVERLAP E6 E8 E9 E10 E11 E12 E13 +R101 BEFORE Arg1:E13 Arg2:E14 +R102 SUB_PROCEDURE Arg1:E15 Arg2:E14 +R103 SUB_PROCEDURE Arg1:E16 Arg2:E14 +T160 Lab_value 490 502 60 beats/min +R104 MODIFY Arg1:T160 Arg2:E16 +* OVERLAP E14 E17 E19 E26 E27 E20 E21 E22 E18 E28 E29 +R105 SUB_PROCEDURE Arg1:E30 Arg2:E29 +R106 SUB_PROCEDURE Arg1:E31 Arg2:E29 +R107 SUB_PROCEDURE Arg1:E32 Arg2:E29 +R108 SUB_PROCEDURE Arg1:E34 Arg2:E29 +R109 SUB_PROCEDURE Arg1:E35 Arg2:E29 +T161 Diagnostic_procedure 902 934 Serum aspartate aminotransferase +E73 Diagnostic_procedure:T161 +T163 Diagnostic_procedure 946 970 alanine aminotransferase +E74 Diagnostic_procedure:T163 +T164 Lab_value 973 980 16 IU/L +R111 MODIFY Arg1:T164 Arg2:E74 +T165 Diagnostic_procedure 982 997 total bilirubin +E75 Diagnostic_procedure:T165 +T166 Lab_value 1000 1009 0.6 mg/dL +R112 MODIFY Arg1:T166 Arg2:E75 +T167 Lab_value 891 900 1.1 mg/dL +R113 MODIFY Arg1:T167 Arg2:E35 +T168 Diagnostic_procedure 1011 1031 alkaline phosphatase +E76 Diagnostic_procedure:T168 +T169 Lab_value 1034 1041 64 IU/L +R114 MODIFY Arg1:T169 Arg2:E76 +T170 Diagnostic_procedure 1043 1050 albumin +E77 Diagnostic_procedure:T170 +T171 Lab_value 1053 1062 4.4 gm/dL +R115 MODIFY Arg1:T171 Arg2:E77 +T172 Diagnostic_procedure 1068 1074 lipase +E78 Diagnostic_procedure:T172 +T173 Lab_value 1077 1084 32 U/dL +R116 MODIFY Arg1:T173 Arg2:E78 +R117 SUB_PROCEDURE Arg1:E73 Arg2:E29 +R118 SUB_PROCEDURE Arg1:E74 Arg2:E29 +R119 SUB_PROCEDURE Arg1:E75 Arg2:E29 +R120 SUB_PROCEDURE Arg1:E76 Arg2:E29 +R121 SUB_PROCEDURE Arg1:E77 Arg2:E29 +R122 SUB_PROCEDURE Arg1:E78 Arg2:E29 +R123 BEFORE Arg1:E29 Arg2:E36 +* OVERLAP E36 E37 E39 E40 E41 E42 E43 E44 E45 E47 E46 E48 E49 E50 E51 E53 E54 E55 E56 E58 E59 E60 E61 E62 E64 E63 E66 E67 +R124 BEFORE Arg1:E67 Arg2:E68 +* OVERLAP E68 E69 +R125 BEFORE Arg1:E69 Arg2:E23 +* OVERLAP E23 E24 E25 +R110 BEFORE Arg1:E25 Arg2:E70 +* OVERLAP E70 E71 +T162 Lab_value 936 944 21 IU/L +R126 MODIFY Arg1:T162 Arg2:E73