--- a +++ b/processing/MACCROBAT/28272235.ann @@ -0,0 +1,362 @@ +T1 Age 2 13 57-year-old +T2 Sex 14 18 male +T3 Clinical_event 23 31 admitted +E1 Clinical_event:T3 +T4 Nonbiological_location 39 47 hospital +T5 Duration 53 61 5 months +E2 Duration:T5 +T6 Sign_symptom 89 97 bleeding +E3 Sign_symptom:T6 +T7 Biological_structure 82 88 rectal +R1 MODIFY Arg1:T7 Arg2:E3 +T8 Severity 74 81 massive +R2 MODIFY Arg1:T8 Arg2:E3 +T9 Duration 178 191 last 55 years +E4 Duration:T9 +T10 History 121 192 past history of passage of fresh blood mixed stool since last 55 years. +T11 History 53 112 5 months’ history of massive rectal bleeding (rectorrhagia) +T12 Sign_symptom 137 171 passage of fresh blood mixed stool +E5 Sign_symptom:T12 +T13 History 216 247 rectal bleeding at the age of 2 +T14 Sign_symptom 223 231 bleeding +E6 Sign_symptom:T14 +T15 Date 239 247 age of 2 +E7 Date:T15 +T16 Biological_structure 216 222 rectal +R3 MODIFY Arg1:T16 Arg2:E6 +T17 Nonbiological_location 257 265 hospital +R4 MODIFY Arg1:T4 Arg2:E1 +T18 Coreference 290 297 symptom +E8 Coreference:T18 +R5 IDENTICAL Arg1:E8 Arg2:E6 +T19 Therapeutic_procedure 308 321 interventions +E9 Therapeutic_procedure:T19 +T20 Family_history 1330 1369 no history of similar illness in family +T21 Sign_symptom 1231 1240 dizziness +E10 Sign_symptom:T21 +T22 Detailed_description 1244 1252 standing +R6 MODIFY Arg1:T22 Arg2:E10 +T23 Sign_symptom 1254 1273 shortness of breath +E11 Sign_symptom:T23 +T24 Sign_symptom 1279 1290 palpitation +E12 Sign_symptom:T24 +T25 Detailed_description 1294 1318 walking a short distance +R7 MODIFY Arg1:T25 Arg2:E12 +T26 Clinical_event 252 256 went +E13 Clinical_event:T26 +R8 MODIFY Arg1:T17 Arg2:E13 +T27 History 449 485 diagnosed and treated as hemorrhoids +T28 Sign_symptom 491 498 symptom +E14 Sign_symptom:T28 +A1 POLARITY E14 NEG +T29 Duration 516 523 a while +E15 Duration:T29 +T30 Sign_symptom 533 541 recurred +E16 Sign_symptom:T30 +T31 Date 549 565 Thirty years ago +E17 Date:T31 +T32 Disease_disorder 594 604 hemangioma +E18 Disease_disorder:T32 +T33 Biological_structure 587 593 rectal +R9 MODIFY Arg1:T33 Arg2:E18 +T34 Therapeutic_procedure 622 633 cryotherapy +E19 Therapeutic_procedure:T34 +T35 Nonbiological_location 641 649 hospital +R10 MODIFY Arg1:T35 Arg2:E19 +T36 Duration 696 705 few years +E20 Duration:T36 +T37 Sign_symptom 684 691 symptom +E21 Sign_symptom:T37 +A2 POLARITY E21 NEG +T38 Sign_symptom 713 721 recurred +E22 Sign_symptom:T38 +T39 Clinical_event 738 747 consulted +E23 Clinical_event:T39 +T40 Nonbiological_location 748 768 many other hospitals +R11 MODIFY Arg1:T40 Arg2:E23 +T41 Duration 858 872 Since 5 months +E24 Duration:T41 +T42 Sign_symptom 897 905 bleeding +E25 Sign_symptom:T42 +A3 TREND E25 INC +T43 Biological_structure 890 896 rectal +R12 MODIFY Arg1:T43 Arg2:E25 +T44 Clinical_event 925 929 went +E26 Clinical_event:T44 +T45 Nonbiological_location 933 947 local hospital +R13 MODIFY Arg1:T45 Arg2:E26 +T46 Therapeutic_procedure 954 966 intervention +E27 Therapeutic_procedure:T46 +T47 Medication 1048 1053 fluid +E28 Medication:T47 +T48 Therapeutic_procedure 1058 1075 blood transfusion +E29 Therapeutic_procedure:T48 +T49 Administration 1036 1047 intravenous +R14 MODIFY Arg1:T49 Arg2:E28 +T50 Therapeutic_procedure 1000 1021 symptomatic treatment +E30 Therapeutic_procedure:T50 +T51 Clinical_event 1088 1096 referred +E31 Clinical_event:T51 +T52 Nonbiological_location 1104 1112 hospital +R15 MODIFY Arg1:T52 Arg2:E31 +T53 Diagnostic_procedure 1374 1393 general examination +E32 Diagnostic_procedure:T53 +T54 Sign_symptom 1412 1416 pale +E33 Sign_symptom:T54 +T55 Diagnostic_procedure 1426 1436 heart rate +E34 Diagnostic_procedure:T55 +T56 Diagnostic_procedure 1441 1455 blood pressure +E35 Diagnostic_procedure:T56 +T57 Lab_value 1461 1480 within normal limit +R16 MODIFY Arg1:T57 Arg2:E35 +R17 MODIFY Arg1:T57 Arg2:E34 +R18 SUB_PROCEDURE Arg1:E34 Arg2:E32 +R19 SUB_PROCEDURE Arg1:E35 Arg2:E32 +T58 Duration 1526 1546 during last 5 months +E36 Duration:T58 +T59 Diagnostic_procedure 1551 1569 rectal examination +E37 Diagnostic_procedure:T59 +T60 Diagnostic_procedure 1514 1525 body weight +E38 Diagnostic_procedure:T60 +T61 Lab_value 1497 1506 lost 5 kg +R20 MODIFY Arg1:T61 Arg2:E38 +T62 Sign_symptom 1571 1582 fresh blood +E39 Sign_symptom:T62 +T63 Biological_structure 1592 1610 around anal region +R21 MODIFY Arg1:T63 Arg2:E39 +T64 Sign_symptom 1620 1624 mass +E40 Sign_symptom:T64 +T65 Texture 1615 1619 soft +R22 MODIFY Arg1:T65 Arg2:E40 +T66 Diagnostic_procedure 1637 1663 digital rectal examination +E41 Diagnostic_procedure:T66 +R23 SUB_PROCEDURE Arg1:E41 Arg2:E37 +T67 Diagnostic_procedure 1668 1679 proctoscopy +E42 Diagnostic_procedure:T67 +T68 Biological_structure 1681 1692 anal cavity +R24 MODIFY Arg1:T68 Arg2:E43 +T69 Sign_symptom 1726 1737 fresh blood +E43 Sign_symptom:T69 +T70 Biological_structure 1697 1703 rectum +R25 MODIFY Arg1:T70 Arg2:E43 +T71 Sign_symptom 1743 1766 active site of bleeding +E44 Sign_symptom:T71 +A4 POLARITY E44 NEG +T72 Sign_symptom 1768 1773 polyp +E45 Sign_symptom:T72 +A5 POLARITY E45 NEG +T73 Sign_symptom 1778 1783 ulcer +E46 Sign_symptom:T73 +A6 POLARITY E46 NEG +T74 Diagnostic_procedure 1805 1827 laboratory examination +E47 Diagnostic_procedure:T74 +T75 Diagnostic_procedure 1829 1849 red blood cell count +E48 Diagnostic_procedure:T75 +T76 Lab_value 1854 1867 3.09 × 1012/L +R26 MODIFY Arg1:T76 Arg2:E48 +T77 Diagnostic_procedure 1901 1911 hemoglobin +E49 Diagnostic_procedure:T77 +T78 Lab_value 1916 1922 86 g/L +R27 MODIFY Arg1:T78 Arg2:E49 +T79 Diagnostic_procedure 1946 1966 All other parameters +E50 Diagnostic_procedure:T79 +T80 Lab_value 1972 1991 within normal limit +R28 MODIFY Arg1:T80 Arg2:E50 +T81 Diagnostic_procedure 2007 2009 CT +E51 Diagnostic_procedure:T81 +T82 Detailed_description 1993 2006 None enhanced +#1 AnnotatorNotes T82 non-enhanced? +R29 MODIFY Arg1:T82 Arg2:E51 +T83 Sign_symptom 2056 2066 thickening +E52 Sign_symptom:T83 +T84 Biological_structure 2045 2055 bowel wall +R30 MODIFY Arg1:T84 Arg2:E52 +T85 Detailed_description 2034 2044 homogenous +R31 MODIFY Arg1:T85 Arg2:E52 +T86 Detailed_description 2017 2025 isodense +T87 Lab_value 2027 2032 35 HU +R32 MODIFY Arg1:T87 Arg2:T86 +R33 MODIFY Arg1:T86 Arg2:E52 +T88 Diagnostic_procedure 2093 2095 CT +E53 Diagnostic_procedure:T88 +T89 Detailed_description 2075 2092 contrast-enhanced +R34 MODIFY Arg1:T89 Arg2:E53 +T90 Sign_symptom 2109 2117 enhances +E54 Sign_symptom:T90 +T91 Detailed_description 2096 2108 venous phase +T92 Detailed_description 2118 2133 heterogeneously +R35 MODIFY Arg1:T92 Arg2:E54 +R36 MODIFY Arg1:T91 Arg2:E54 +T93 Sign_symptom 2144 2158 calcifications +E55 Sign_symptom:T93 +T94 Detailed_description 2135 2143 Multiple +R37 MODIFY Arg1:T94 Arg2:E55 +T95 Biological_structure 2176 2196 thickened bowel wall +R38 MODIFY Arg1:T95 Arg2:E55 +T96 Biological_structure 2212 2228 peri-rectal area +R39 MODIFY Arg1:T96 Arg2:E55 +T97 Sign_symptom 2230 2236 Lesion +E56 Sign_symptom:T97 +T98 Biological_structure 2261 2275 distal sigmoid +T99 Biological_structure 2279 2298 whole of the rectum +R40 MODIFY Arg1:T98 Arg2:E56 +R41 MODIFY Arg1:T99 Arg2:E56 +T100 Sign_symptom 2327 2334 lesions +E57 Sign_symptom:T100 +T101 Detailed_description 2308 2316 Multiple +T102 Detailed_description 2317 2326 hypodense +R42 MODIFY Arg1:T102 Arg2:E57 +R43 MODIFY Arg1:T101 Arg2:E57 +T103 Biological_structure 2353 2359 spleen +R44 MODIFY Arg1:T103 Arg2:E57 +T104 Sign_symptom 2397 2403 anemia +E58 Sign_symptom:T104 +T105 Therapeutic_procedure 2437 2447 laparotomy +E59 Therapeutic_procedure:T105 +T106 Therapeutic_procedure 2460 2477 surgical excision +E60 Therapeutic_procedure:T106 +T107 Biological_structure 2427 2436 abdominal +R45 MODIFY Arg1:T107 Arg2:E59 +T108 Sign_symptom 2506 2512 lesion +E61 Sign_symptom:T108 +T109 Distance 2495 2500 25 cm +R46 MODIFY Arg1:T109 Arg2:E61 +T110 Therapeutic_procedure 2383 2393 management +E62 Therapeutic_procedure:T110 +T111 Biological_structure 2538 2552 distal sigmoid +T112 Biological_structure 2556 2575 whole of the rectum +R47 MODIFY Arg1:T111 Arg2:E61 +R48 MODIFY Arg1:T112 Arg2:E61 +T113 Therapeutic_procedure 2657 2668 anastomosis +E63 Therapeutic_procedure:T113 +T114 Detailed_description 2644 2656 sigmoid-anus +R49 MODIFY Arg1:T114 Arg2:E63 +T115 Therapeutic_procedure 2632 2639 excised +E64 Therapeutic_procedure:T115 +T116 Biological_structure 2601 2626 part of the sigmoid colon +T117 Biological_structure 2577 2596 Whole of the rectum +R50 MODIFY Arg1:T116 Arg2:E64 +R51 MODIFY Arg1:T117 Arg2:E64 +T118 Diagnostic_procedure 2692 2721 histopathological examination +E65 Diagnostic_procedure:T118 +T119 Detailed_description 2725 2741 excised specimen +R52 MODIFY Arg1:T119 Arg2:E65 +T120 Diagnostic_procedure 2975 2995 Immunohistochemistry +E66 Diagnostic_procedure:T120 +T121 Diagnostic_procedure 3046 3051 CD 31 +E67 Diagnostic_procedure:T121 +T122 Diagnostic_procedure 3056 3061 CD 34 +E68 Diagnostic_procedure:T122 +T123 Lab_value 3033 3041 positive +R53 MODIFY Arg1:T123 Arg2:E67 +R54 MODIFY Arg1:T123 Arg2:E68 +T124 Biological_structure 3015 3032 endothelial cells +R55 MODIFY Arg1:T124 Arg2:T123 +R56 SUB_PROCEDURE Arg1:E67 Arg2:E66 +R57 SUB_PROCEDURE Arg1:E68 Arg2:E66 +T125 Diagnostic_procedure 3092 3097 D2–40 +E69 Diagnostic_procedure:T125 +T126 Diagnostic_procedure 3130 3135 D2–40 +E70 Diagnostic_procedure:T126 +R58 SUB_PROCEDURE Arg1:E69 Arg2:E66 +R59 SUB_PROCEDURE Arg1:E70 Arg2:E66 +T127 Biological_structure 3063 3073 Some cells +T128 Biological_structure 3105 3111 others +#2 AnnotatorNotes T128 other cells +T129 Lab_value 3117 3125 negative +T130 Lab_value 3079 3087 positive +R60 MODIFY Arg1:T130 Arg2:E69 +R61 MODIFY Arg1:T129 Arg2:E70 +R62 MODIFY Arg1:T128 Arg2:T129 +R63 MODIFY Arg1:T127 Arg2:T130 +T131 Disease_disorder 3212 3228 hemolymphangioma +E71 Disease_disorder:T131 +T132 Disease_disorder 3300 3309 infection +E72 Disease_disorder:T132 +T133 Biological_structure 3289 3299 intestinal +R64 MODIFY Arg1:T133 Arg2:E72 +T134 Clinical_event 3349 3359 discharged +E73 Clinical_event:T134 +T135 Nonbiological_location 3365 3373 hospital +R65 MODIFY Arg1:T135 Arg2:E73 +T136 Date 3381 3389 23rd day +E74 Date:T136 +T137 Sign_symptom 3425 3437 complication +E75 Sign_symptom:T137 +A7 POLARITY E75 NEG +T138 Sign_symptom 3441 3451 recurrence +E76 Sign_symptom:T138 +A8 POLARITY E76 NEG +T139 Duration 3471 3480 6 months’ +E77 Duration:T139 +T140 Clinical_event 3481 3490 follow-up +E78 Clinical_event:T140 +T141 Detailed_description 2749 2787 submucosal multiple thin-walled vessel +T142 Lab_value 2791 2803 varying size +T143 Lab_value 2809 2826 interposed stroma +R66 MODIFY Arg1:T141 Arg2:T119 +R67 MODIFY Arg1:T142 Arg2:T141 +R68 MODIFY Arg1:T143 Arg2:T141 +T144 Lab_value 2828 2871 Some vessels lumen consisted of blood cells +T145 Lab_value 2912 2942 other consisted of clear fluid +R69 MODIFY Arg1:T144 Arg2:T141 +R70 MODIFY Arg1:T145 Arg2:T141 +R71 AFTER Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 +R72 AFTER Arg1:E3 Arg2:E5 +* OVERLAP E5 E4 E6 E7 +R73 BEFORE Arg1:E7 Arg2:E13 +* OVERLAP E13 E8 E9 +R74 BEFORE Arg1:E9 Arg2:E14 +* OVERLAP E14 E15 +R75 BEFORE Arg1:E15 Arg2:E16 +R76 BEFORE Arg1:E16 Arg2:E17 +* OVERLAP E17 E18 E19 +R77 BEFORE Arg1:E19 Arg2:E21 +* OVERLAP E21 E20 +R78 BEFORE Arg1:E20 Arg2:E22 +R79 BEFORE Arg1:E22 Arg2:E23 +T146 Sign_symptom 800 818 symptomatic relief +E79 Sign_symptom:T146 +A9 POLARITY E79 UNCERTAIN +T147 Detailed_description 789 799 short-term +R80 MODIFY Arg1:T147 Arg2:E79 +* OVERLAP E23 E79 +R81 BEFORE Arg1:E79 Arg2:E24 +* OVERLAP E24 E25 +R82 BEFORE Arg1:E25 Arg2:E26 +* OVERLAP E26 E27 E80 E30 E28 E29 +T148 Sign_symptom 987 995 bleeding +E80 Sign_symptom:T148 +R83 BEFORE Arg1:E29 Arg2:E31 +T149 Sign_symptom 1157 1165 bleeding +E81 Sign_symptom:T149 +T150 Detailed_description 1169 1180 fresh blood +R84 MODIFY Arg1:T150 Arg2:E81 +T151 Biological_structure 1150 1156 rectal +R85 MODIFY Arg1:T151 Arg2:E81 +T152 Severity 1137 1149 Intermediate +R86 MODIFY Arg1:T152 Arg2:E81 +T153 Clinical_event 1198 1207 admission +E82 Clinical_event:T153 +R87 BEFORE Arg1:E31 Arg2:E81 +* OVERLAP E81 E82 E10 E11 E12 E32 E33 +R88 AFTER Arg1:E33 Arg2:E38 +* OVERLAP E38 E36 +R89 BEFORE Arg1:E36 Arg2:E37 +* OVERLAP E37 E39 E40 E42 E43 E44 E45 E46 E47 E50 E51 E52 E53 E54 E55 E56 E57 +R90 SUB_PROCEDURE Arg1:E48 Arg2:E47 +R91 SUB_PROCEDURE Arg1:E49 Arg2:E47 +R92 BEFORE Arg1:E57 Arg2:E62 +* OVERLAP E62 E58 +R93 BEFORE Arg1:E58 Arg2:E59 +* OVERLAP E59 E60 E61 E64 E63 +R94 BEFORE Arg1:E63 Arg2:E65 +* OVERLAP E65 E66 E71 +R95 BEFORE Arg1:E71 Arg2:E72 +T154 Therapeutic_procedure 3321 3328 managed +E83 Therapeutic_procedure:T154 +R96 BEFORE Arg1:E72 Arg2:E83 +* OVERLAP E83 E73 +R97 BEFORE Arg1:E73 Arg2:E75 +* OVERLAP E75 E76 E77 E78