--- a +++ b/processing/MACCROBAT/28239141.ann @@ -0,0 +1,296 @@ +T1 Age 2 13 58-year-old +T2 Personal_background 14 19 white +T3 Personal_background 20 28 American +T4 Sex 29 33 male +T5 Clinical_event 34 43 presented +E1 Clinical_event:T5 +T6 Nonbiological_location 51 71 emergency department +T7 Nonbiological_location 73 75 ED +R1 IDENTICAL Arg1:T7 Arg2:T6 +T8 Sign_symptom 97 106 confusion +E2 Sign_symptom:T8 +T9 Sign_symptom 108 122 disorientation +E3 Sign_symptom:T9 +T10 Sign_symptom 124 150 inability to walk steadily +E4 Sign_symptom:T10 +T11 Sign_symptom 156 167 dehydration +E5 Sign_symptom:T11 +T12 Sign_symptom 196 204 weakness +E6 Sign_symptom:T12 +T13 Sign_symptom 206 214 polyuria +E7 Sign_symptom:T13 +T14 Sign_symptom 220 230 polydipsia +E8 Sign_symptom:T14 +T15 Duration 231 253 over the previous week +E9 Duration:T15 +R2 MODIFY Arg1:E9 Arg2:E8 +R3 MODIFY Arg1:E9 Arg2:E7 +R4 MODIFY Arg1:E9 Arg2:E6 +T16 Detailed_description 82 93 acute onset +R5 MODIFY Arg1:T16 Arg2:E2 +R6 MODIFY Arg1:T16 Arg2:E3 +R7 MODIFY Arg1:T16 Arg2:E4 +R8 MODIFY Arg1:T16 Arg2:E5 +T17 Disease_disorder 282 285 CML +E10 Disease_disorder:T17 +#1 AnnotatorNotes E10 Chronic myeloid leukemia +T18 Date 286 303 six years earlier +E11 Date:T18 +T19 Clinical_event 267 276 diagnosed +E12 Clinical_event:T19 +T20 Medication 348 360 chemotherapy +E13 Medication:T20 +T21 Detailed_description 339 347 multiple +T22 Detailed_description 361 369 regimens +R9 MODIFY Arg1:T22 Arg2:E13 +R10 MODIFY Arg1:T21 Arg2:E13 +T23 Medication 409 420 allopurinol +E14 Medication:T23 +T24 Clinical_event 425 433 awaiting +E15 Clinical_event:T24 +T25 Therapeutic_procedure 444 466 bone marrow transplant +E16 Therapeutic_procedure:T25 +A1 POLARITY E16 NEG +#2 AnnotatorNotes E16 This event is Negative because it hadn't happened yet +T26 Detailed_description 434 443 allogenic +R11 MODIFY Arg1:T26 Arg2:E16 +R12 MODIFY Arg1:E16 Arg2:E15 +T27 Sign_symptom 313 335 hematological response +E17 Sign_symptom:T27 +A2 POLARITY E17 NEG +T28 Diagnostic_procedure 468 479 Vital signs +E18 Diagnostic_procedure:T28 +T29 Clinical_event 483 492 admission +E19 Clinical_event:T29 +T30 Nonbiological_location 500 502 ED +R13 MODIFY Arg1:T30 Arg2:E19 +T31 Diagnostic_procedure 512 522 heart rate +E20 Diagnostic_procedure:T31 +T32 Lab_value 526 533 104 bpm +R14 MODIFY Arg1:T32 Arg2:E20 +T33 Diagnostic_procedure 535 549 blood pressure +E21 Diagnostic_procedure:T33 +T34 Lab_value 553 565 122/68 mm Hg +R15 MODIFY Arg1:T34 Arg2:E21 +T35 Diagnostic_procedure 570 581 temperature +E22 Diagnostic_procedure:T35 +T36 Lab_value 585 591 99.7°F +T37 Lab_value 593 599 37.6°C +R16 MODIFY Arg1:T36 Arg2:E22 +R17 MODIFY Arg1:T37 Arg2:E22 +T38 Diagnostic_procedure 639 659 physical examination +E23 Diagnostic_procedure:T38 +T39 Lab_value 613 635 no remarkable findings +R18 MODIFY Arg1:T39 Arg2:E23 +T41 Sign_symptom 697 708 dehydration +E25 Sign_symptom:T41 +T40 Sign_symptom 671 692 altered mental status +E24 Sign_symptom:T40 +T42 Diagnostic_procedure 710 732 Laboratory evaluations +E26 Diagnostic_procedure:T42 +T43 Diagnostic_procedure 739 749 hemoglobin +E27 Diagnostic_procedure:T43 +T44 Lab_value 750 759 13.3 g/dL +R19 MODIFY Arg1:T44 Arg2:E27 +T45 Diagnostic_procedure 761 783 white blood cell count +E28 Diagnostic_procedure:T45 +T46 Lab_value 784 794 18.3×109/L +T47 Lab_value 796 813 neutrophils 79.6% +T48 Lab_value 815 831 lymphocytes 7.2% +T49 Lab_value 837 851 monocytes 8.3% +R20 MODIFY Arg1:T46 Arg2:E28 +R21 MODIFY Arg1:T47 Arg2:E28 +R22 MODIFY Arg1:T48 Arg2:E28 +R23 MODIFY Arg1:T49 Arg2:E28 +T50 Diagnostic_procedure 858 872 platelet count +E29 Diagnostic_procedure:T50 +T51 Lab_value 873 882 910×109/L +R24 MODIFY Arg1:T51 Arg2:E29 +T52 Diagnostic_procedure 884 896 Serum levels +E30 Diagnostic_procedure:T52 +R25 SUB_PROCEDURE Arg1:E27 Arg2:E26 +R26 SUB_PROCEDURE Arg1:E28 Arg2:E26 +R27 SUB_PROCEDURE Arg1:E29 Arg2:E26 +T53 Diagnostic_procedure 903 910 calcium +E31 Diagnostic_procedure:T53 +T54 Lab_value 911 921 18.6 mg/dL +R28 MODIFY Arg1:T54 Arg2:E31 +T55 Diagnostic_procedure 923 932 phosphate +E32 Diagnostic_procedure:T55 +T56 Lab_value 933 942 4.6 mg/dL +R29 MODIFY Arg1:T56 Arg2:E32 +T57 Diagnostic_procedure 944 950 sodium +E33 Diagnostic_procedure:T57 +T58 Lab_value 951 960 135 mEq/L +R30 MODIFY Arg1:T58 Arg2:E33 +T59 Diagnostic_procedure 962 971 potassium +E34 Diagnostic_procedure:T59 +T60 Lab_value 972 981 2.7 mg/dL +R31 MODIFY Arg1:T60 Arg2:E34 +T61 Diagnostic_procedure 983 990 albumin +E35 Diagnostic_procedure:T61 +T62 Lab_value 991 999 4.0 g/dL +R32 MODIFY Arg1:T62 Arg2:E35 +T63 Diagnostic_procedure 1001 1011 creatinine +E36 Diagnostic_procedure:T63 +T64 Lab_value 1012 1021 2.2 mg/dL +R33 MODIFY Arg1:T64 Arg2:E36 +T65 Diagnostic_procedure 1023 1038 total bilirubin +E37 Diagnostic_procedure:T65 +T66 Lab_value 1039 1048 0.9 mg/dL +R34 MODIFY Arg1:T66 Arg2:E37 +T67 Diagnostic_procedure 1050 1070 alkaline phosphatase +E38 Diagnostic_procedure:T67 +T68 Lab_value 1071 1079 125 IU/L +R35 MODIFY Arg1:T68 Arg2:E38 +T69 Diagnostic_procedure 1081 1107 aspartate aminotransferase +E39 Diagnostic_procedure:T69 +T70 Lab_value 1108 1115 41 IU/L +R36 MODIFY Arg1:T70 Arg2:E39 +T71 Diagnostic_procedure 1121 1145 alanine aminotransferase +E40 Diagnostic_procedure:T71 +T72 Lab_value 1146 1153 71 IU/L +R37 MODIFY Arg1:T72 Arg2:E40 +R38 SUB_PROCEDURE Arg1:E31 Arg2:E30 +R39 SUB_PROCEDURE Arg1:E32 Arg2:E30 +R40 SUB_PROCEDURE Arg1:E33 Arg2:E30 +R41 SUB_PROCEDURE Arg1:E34 Arg2:E30 +R42 SUB_PROCEDURE Arg1:E35 Arg2:E30 +R43 SUB_PROCEDURE Arg1:E36 Arg2:E30 +R44 SUB_PROCEDURE Arg1:E37 Arg2:E30 +R45 SUB_PROCEDURE Arg1:E38 Arg2:E30 +R46 SUB_PROCEDURE Arg1:E39 Arg2:E30 +R47 SUB_PROCEDURE Arg1:E40 Arg2:E30 +T73 Diagnostic_procedure 1155 1159 SPEP +E41 Diagnostic_procedure:T73 +#3 AnnotatorNotes E41 Serum protein electrophoresis +T74 Lab_value 1164 1187 negative for an M spike +R48 MODIFY Arg1:T74 Arg2:E41 +T75 Diagnostic_procedure 1189 1217 Hormones and vitamins levels +E42 Diagnostic_procedure:T75 +T76 Diagnostic_procedure 1224 1227 PTH +E43 Diagnostic_procedure:T76 +T77 Diagnostic_procedure 1251 1256 PHTrP +E44 Diagnostic_procedure:T77 +T78 Lab_value 1228 1236 8.5 pg/L +R49 MODIFY Arg1:T78 Arg2:E43 +T79 Lab_value 1257 1265 1.4 pg/L +R50 MODIFY Arg1:T79 Arg2:E44 +T80 Diagnostic_procedure 1277 1292 25-OH vitamin D +E45 Diagnostic_procedure:T80 +T81 Lab_value 1293 1303 30.4 ng/mL +R51 MODIFY Arg1:T81 Arg2:E45 +T82 Diagnostic_procedure 1322 1340 1,25 OH vitamin D3 +E46 Diagnostic_procedure:T82 +T83 Lab_value 1341 1351 33.7 ng/mL +R52 MODIFY Arg1:T83 Arg2:E46 +T84 Diagnostic_procedure 1373 1380 CT scan +E47 Diagnostic_procedure:T84 +T85 Biological_structure 1367 1372 Chest +R53 MODIFY Arg1:T85 Arg2:E47 +T86 Sign_symptom 1402 1409 lesions +E48 Sign_symptom:T86 +T87 Detailed_description 1396 1401 lytic +T88 Detailed_description 1388 1395 diffuse +R54 MODIFY Arg1:T87 Arg2:E48 +R55 MODIFY Arg1:T88 Arg2:E48 +T89 Sign_symptom 1414 1430 bone destruction +E49 Sign_symptom:T89 +T90 Biological_structure 1457 1474 thoracic skeleton +R56 MODIFY Arg1:T90 Arg2:E49 +T91 Sign_symptom 1499 1522 bone marrow involvement +E50 Sign_symptom:T91 +A3 POLARITY E50 UNCERTAIN +T92 Sign_symptom 1641 1652 blast phase +E51 Sign_symptom:T92 +T93 Disease_disorder 1592 1595 CML +E52 Disease_disorder:T93 +T94 Sign_symptom 1607 1620 hypercalcemia +E53 Sign_symptom:T94 +T95 Therapeutic_procedure 1680 1689 hydration +E54 Therapeutic_procedure:T95 +T96 Detailed_description 1669 1679 aggressive +R57 MODIFY Arg1:T96 Arg2:E54 +T97 Medication 1700 1706 saline +E55 Medication:T97 +T98 Medication 1711 1721 calcitonin +E56 Medication:T98 +T99 Lab_value 1695 1699 0.9% +R58 MODIFY Arg1:T99 Arg2:E55 +T100 Dosage 1722 1731 400 units +T101 Administration 1732 1744 subcutaneous +R59 MODIFY Arg1:T100 Arg2:E56 +R60 MODIFY Arg1:T101 Arg2:E56 +T102 Medication 1777 1792 zoledronic acid +E57 Medication:T102 +T103 Dosage 1793 1799 3.3 mg +R61 MODIFY Arg1:T103 Arg2:E57 +T104 Administration 1800 1811 intravenous +R62 MODIFY Arg1:T104 Arg2:E57 +T105 Detailed_description 1813 1845 adjusted for renal insufficiency +R63 MODIFY Arg1:T105 Arg2:E57 +T106 Duration 1858 1873 After five days +E58 Duration:T106 +T107 Sign_symptom 1905 1913 symptoms +E59 Sign_symptom:T107 +A4 POLARITY E59 NEG +T108 Diagnostic_procedure 1918 1938 serum calcium levels +E60 Diagnostic_procedure:T108 +T109 Lab_value 1888 1901 normalization +R64 MODIFY Arg1:T109 Arg2:E60 +T110 Clinical_event 1960 1969 discharge +E61 Clinical_event:T110 +T111 Nonbiological_location 1979 1987 hospital +R65 MODIFY Arg1:T111 Arg2:E61 +T112 Therapeutic_procedure 2016 2036 palliative treatment +E62 Therapeutic_procedure:T112 +T113 Medication 2042 2051 ponatinib +E63 Medication:T113 +T114 Therapeutic_procedure 2056 2068 radiotherapy +E64 Therapeutic_procedure:T114 +R66 SUB_PROCEDURE Arg1:E63 Arg2:E62 +R67 SUB_PROCEDURE Arg1:E64 Arg2:E62 +T115 Diagnostic_procedure 2081 2101 serum calcium levels +E65 Diagnostic_procedure:T115 +T116 Lab_value 2107 2117 maintained +R68 MODIFY Arg1:T116 Arg2:E65 +T117 Medication 2123 2138 zoledronic acid +E66 Medication:T117 +T118 Dosage 2139 2161 4 mg every eight weeks +R69 MODIFY Arg1:T118 Arg2:E66 +T119 Disease_disorder 2192 2198 cancer +E67 Disease_disorder:T119 +A5 TREND E67 INC +T120 Outcome 2217 2228 passed away +E68 Outcome:T120 +T121 Date 2243 2261 eight months after +E69 Date:T121 +* OVERLAP E1 E2 E3 E4 E5 +R70 AFTER Arg1:E5 Arg2:E6 +* OVERLAP E6 E7 E8 E9 +R71 AFTER Arg1:E9 Arg2:E12 +* OVERLAP E12 E10 E11 E17 E13 +R72 BEFORE Arg1:E13 Arg2:E14 +* OVERLAP E14 E15 E16 +R73 BEFORE Arg1:E16 Arg2:E18 +* OVERLAP E18 E19 E20 E21 E22 E23 E24 E25 E26 E30 E41 E42 E47 E48 E49 E50 +R74 SUB_PROCEDURE Arg1:E43 Arg2:E42 +R75 SUB_PROCEDURE Arg1:E44 Arg2:E42 +R76 SUB_PROCEDURE Arg1:E45 Arg2:E42 +R77 SUB_PROCEDURE Arg1:E46 Arg2:E42 +T122 Clinical_event 1579 1588 diagnosis +E70 Clinical_event:T122 +R78 BEFORE Arg1:E50 Arg2:E70 +* OVERLAP E70 E52 E53 E51 +R79 BEFORE Arg1:E51 Arg2:E54 +R80 SUB_PROCEDURE Arg1:E55 Arg2:E54 +R81 SUB_PROCEDURE Arg1:E56 Arg2:E54 +* OVERLAP E54 E57 +R82 BEFORE Arg1:E57 Arg2:E58 +* OVERLAP E58 E59 E60 +R83 BEFORE Arg1:E60 Arg2:E61 +R84 BEFORE Arg1:E61 Arg2:E62 +* OVERLAP E62 E65 E66 +R85 BEFORE Arg1:E66 Arg2:E67 +R86 BEFORE Arg1:E67 Arg2:E68 +* OVERLAP E68 E69