--- a +++ b/processing/MACCROBAT/28154700.ann @@ -0,0 +1,328 @@ +T1 Age 85 96 47-year-old +T2 Personal_background 97 105 Tunisian +T3 Sex 106 109 man +T4 History 128 143 Crohn's disease +T5 Disease_disorder 128 143 Crohn's disease +E1 Disease_disorder:T5 +T6 Clinical_event 148 156 admitted +E2 Clinical_event:T6 +T7 Nonbiological_location 164 183 University Hospital +R1 MODIFY Arg1:T7 Arg2:E2 +T8 Date 187 191 2015 +E3 Date:T8 +T9 Sign_symptom 217 225 diarrhea +E4 Sign_symptom:T9 +T10 Detailed_description 209 216 chronic +T11 Detailed_description 203 208 fluid +R2 MODIFY Arg1:T11 Arg2:E4 +R3 MODIFY Arg1:T10 Arg2:E4 +T12 Diagnostic_procedure 233 247 stools per day +E5 Diagnostic_procedure:T12 +T13 Quantitative_concept 231 232 4 +R4 MODIFY Arg1:T13 Arg2:E5 +T14 Qualitative_concept 248 260 daytime only +R5 MODIFY Arg1:T14 Arg2:E5 +T15 Other_event 270 277 ooddebr +E6 Other_event:T15 +A1 POLARITY E6 NEG +#1 AnnotatorNotes E6 [f]ood debr[is]? +T16 Duration 379 392 from 6 months +E7 Duration:T16 +T17 Sign_symptom 297 305 vomiting +E8 Sign_symptom:T17 +T18 Sign_symptom 325 329 pain +E9 Sign_symptom:T18 +T19 Sign_symptom 333 338 fever +E10 Sign_symptom:T19 +A2 POLARITY E10 NEG +T20 Biological_structure 315 324 abdominal +R6 MODIFY Arg1:T20 Arg2:E9 +A3 POLARITY E9 NEG +T21 Sign_symptom 346 357 weight loss +E11 Sign_symptom:T21 +T22 Diagnostic_procedure 394 410 Laboratory tests +E12 Diagnostic_procedure:T22 +T23 Qualitative_concept 416 422 normal +R7 MODIFY Arg1:T23 Arg2:E12 +T24 Diagnostic_procedure 456 474 pancreatic enzymes +E13 Diagnostic_procedure:T24 +T25 Biological_structure 450 455 serum +R8 MODIFY Arg1:T25 Arg2:E13 +T26 Qualitative_concept 436 446 elevations +R9 MODIFY Arg1:T26 Arg2:E13 +T27 Diagnostic_procedure 507 517 ultrasound +E14 Diagnostic_procedure:T27 +T28 Biological_structure 497 506 abdominal +R10 MODIFY Arg1:T28 Arg2:E14 +T29 Diagnostic_procedure 522 541 computed tomography +E15 Diagnostic_procedure:T29 +T30 Diagnostic_procedure 543 545 CT +E16 Diagnostic_procedure:T30 +R11 IDENTICAL Arg1:E16 Arg2:E15 +T31 Diagnostic_procedure 863 867 size +E17 Diagnostic_procedure:T31 +T32 Biological_structure 875 879 head +R12 MODIFY Arg1:T32 Arg2:E17 +T33 Qualitative_concept 884 890 normal +R13 MODIFY Arg1:T33 Arg2:E17 +T34 Sign_symptom 906 914 enlarged +E18 Sign_symptom:T34 +A4 POLARITY E18 NEG +T35 Biological_structure 915 926 lymph nodes +R14 MODIFY Arg1:T35 Arg2:E18 +T36 Disease_disorder 959 971 sacroiliitis +E19 Disease_disorder:T36 +T37 Disease_disorder 986 998 coxarthrosis +E20 Disease_disorder:T37 +T38 Detailed_description 976 985 bilateral +T39 Detailed_description 949 958 bilateral +R15 MODIFY Arg1:T39 Arg2:E19 +R16 MODIFY Arg1:T38 Arg2:E20 +T40 Disease_disorder 572 579 ileitis +E21 Disease_disorder:T40 +T41 Biological_structure 587 602 last ileal loop +T42 Sign_symptom 603 611 extended +E22 Sign_symptom:T42 +T43 Distance 615 621 300 mm +T44 Disease_disorder 21 37 pancreatic tumor +E23 Disease_disorder:T44 +T45 Disease_disorder 59 65 trauma +E24 Disease_disorder:T45 +A5 POLARITY E24 NEG +T46 Disease_disorder 69 81 panceratitis +E25 Disease_disorder:T46 +A6 POLARITY E25 NEG +T47 Diagnostic_procedure 1000 1003 MRI +E26 Diagnostic_procedure:T47 +T48 Diagnostic_procedure 1757 1778 post-operative course +E27 Diagnostic_procedure:T48 +T49 Diagnostic_procedure 1525 1551 Esophagogastroduodenoscopy +E28 Diagnostic_procedure:T49 +T50 Lab_value 1556 1562 normal +E29 Lab_value:T50 +R17 MODIFY Arg1:E29 Arg2:E28 +R18 MODIFY Arg1:T41 Arg2:E22 +R19 MODIFY Arg1:T43 Arg2:E22 +T51 Sign_symptom 627 636 distended +E30 Sign_symptom:T51 +T52 Biological_structure 637 648 ileal loops +T53 Detailed_description 649 657 upstream +R20 MODIFY Arg1:T53 Arg2:E30 +R21 MODIFY Arg1:T52 Arg2:E30 +T54 Disease_disorder 1508 1523 Crohn's disease +E31 Disease_disorder:T54 +T55 Diagnostic_procedure 1429 1437 biopsies +E32 Diagnostic_procedure:T55 +T56 Clinical_event 1807 1817 discharged +E33 Clinical_event:T56 +T57 Nonbiological_location 1818 1822 home +R22 MODIFY Arg1:T57 Arg2:E33 +T58 History 38 81 without a history of trauma or panceratitis +T59 Date 1823 1836 within 7 days +E34 Date:T59 +T60 Diagnostic_procedure 1847 1864 general condition +E35 Diagnostic_procedure:T60 +T61 Lab_value 1842 1846 good +E36 Lab_value:T61 +R23 MODIFY Arg1:E36 Arg2:E35 +T62 Sign_symptom 1880 1911 symptoms of glucose intolerance +E37 Sign_symptom:T62 +A7 POLARITY E37 NEG +T63 Therapeutic_procedure 1925 1929 diet +E38 Therapeutic_procedure:T63 +T64 Qualitative_concept 1918 1924 normal +R24 MODIFY Arg1:T64 Arg2:E38 +T65 Diagnostic_procedure 1950 1973 microscopic examination +E39 Diagnostic_procedure:T65 +T66 Disease_disorder 2010 2031 neuro endocrine tumor +E40 Disease_disorder:T66 +T67 Detailed_description 1983 2002 well differentiated +T68 Detailed_description 2003 2009 cystic +R25 MODIFY Arg1:T68 Arg2:E40 +R26 MODIFY Arg1:T67 Arg2:E40 +T69 Biological_structure 2039 2059 tail of the pancreas +R27 MODIFY Arg1:T69 Arg2:E40 +T70 Qualitative_concept 2060 2067 grade I +R28 MODIFY Arg1:T70 Arg2:E40 +T71 Clinical_event 2318 2343 out-patient consultations +E41 Clinical_event:T71 +T72 Biological_structure 2351 2359 hospital +T73 Outcome 2364 2373 felt well +E42 Outcome:T73 +R29 MODIFY Arg1:T72 Arg2:E41 +T74 Sign_symptom 2390 2400 complaints +E43 Sign_symptom:T74 +A8 POLARITY E43 NEG +T75 Diagnostic_procedure 2447 2465 glucose metabolism +E44 Diagnostic_procedure:T75 +T76 Lab_value 2440 2446 normal +E45 Lab_value:T76 +R30 MODIFY Arg1:E45 Arg2:E44 +T77 Diagnostic_procedure 2418 2435 periodic findings +E46 Diagnostic_procedure:T77 +T78 Lab_value 2410 2417 correct +E47 Lab_value:T78 +R31 MODIFY Arg1:E47 Arg2:E46 +T79 Severity 2383 2389 severe +R32 MODIFY Arg1:T79 Arg2:E43 +T80 Disease_disorder 2160 2194 neuroendocrine hyperplasia lesions +E48 Disease_disorder:T80 +T81 Biological_structure 2198 2218 islets of Langerhans +R33 MODIFY Arg1:T81 Arg2:E48 +T82 Diagnostic_procedure 2220 2234 surgical limit +E49 Diagnostic_procedure:T82 +T83 Lab_value 2239 2246 healthy +E50 Lab_value:T83 +R34 MODIFY Arg1:E50 Arg2:E49 +T84 Diagnostic_procedure 2248 2252 pTNM +E51 Diagnostic_procedure:T84 +#2 AnnotatorNotes E51 Pathological tumor-node-metastasis +T85 Lab_value 2253 2256 pT2 +E52 Lab_value:T85 +R35 MODIFY Arg1:E52 Arg2:E51 +T86 Sign_symptom 2258 2265 ectopic +E53 Sign_symptom:T86 +T87 Biological_structure 2266 2272 spleen +T88 Disease_disorder 2282 2295 cholecystitis +E54 Disease_disorder:T88 +T89 Detailed_description 2274 2281 chronic +R36 MODIFY Arg1:T89 Arg2:E54 +R37 MODIFY Arg1:T87 Arg2:E53 +T90 Sign_symptom 1243 1253 gallstones +E55 Sign_symptom:T90 +T91 Sign_symptom 1258 1272 biliary sludge +E56 Sign_symptom:T91 +T92 Biological_structure 1213 1224 gallbladder +T93 Detailed_description 1234 1242 multiple +R38 MODIFY Arg1:T93 Arg2:E55 +R39 MODIFY Arg1:T92 Arg2:E55 +R40 MODIFY Arg1:T92 Arg2:E56 +T94 Diagnostic_procedure 1274 1287 Tumor markers +E57 Diagnostic_procedure:T94 +T95 Lab_value 1292 1298 normal +E58 Lab_value:T95 +R41 MODIFY Arg1:E58 Arg2:E57 +T96 Diagnostic_procedure 1321 1332 colonoscopy +E59 Diagnostic_procedure:T96 +T97 Sign_symptom 1356 1363 swollen +E60 Sign_symptom:T97 +T98 Sign_symptom 1365 1373 inflamed +E61 Sign_symptom:T98 +T99 Sign_symptom 1389 1400 ulcerations +E62 Sign_symptom:T99 +T100 Biological_structure 1333 1347 terminal ileum +R42 MODIFY Arg1:T100 Arg2:E60 +R43 MODIFY Arg1:T100 Arg2:E61 +R44 MODIFY Arg1:T100 Arg2:E62 +T101 Diagnostic_procedure 1405 1413 biopsies +E63 Diagnostic_procedure:T101 +T102 Biological_structure 1193 1200 Wirsung +#3 AnnotatorNotes T102 duct of Wirsung, in the pancreas +T103 Disease_disorder 1022 1029 ileitis +E64 Disease_disorder:T103 +T104 Disease_disorder 1484 1491 ileitis +E65 Disease_disorder:T104 +T105 Detailed_description 1460 1468 subacute +T106 Detailed_description 1473 1483 ulcerative +R45 MODIFY Arg1:T106 Arg2:E65 +R46 MODIFY Arg1:T105 Arg2:E65 +T107 Therapeutic_procedure 1592 1603 laparoscopy +E66 Therapeutic_procedure:T107 +T108 Therapeutic_procedure 1621 1635 pancreatectomy +E67 Therapeutic_procedure:T108 +T109 Therapeutic_procedure 1640 1655 cholecystectomy +E68 Therapeutic_procedure:T109 +T110 Sign_symptom 1671 1676 tumor +E69 Sign_symptom:T110 +T111 Distance 1657 1663 1.5 cm +R47 MODIFY Arg1:T111 Arg2:E69 +T112 Detailed_description 1664 1670 cystic +R48 MODIFY Arg1:T112 Arg2:E69 +T113 Biological_structure 1684 1700 tail of pancreas +R49 MODIFY Arg1:T113 Arg2:E69 +T114 Therapeutic_procedure 1705 1713 resected +E70 Therapeutic_procedure:T114 +T115 Diagnostic_procedure 1727 1751 pathological examination +E71 Diagnostic_procedure:T115 +T116 Diagnostic_procedure 2113 2120 mitosis +E72 Diagnostic_procedure:T116 +T117 Lab_value 2121 2129 <2/10CFG +E73 Lab_value:T117 +T118 Diagnostic_procedure 2134 2138 Ki67 +E74 Diagnostic_procedure:T118 +T119 Lab_value 2138 2141 <2% +E75 Lab_value:T119 +R50 MODIFY Arg1:E73 Arg2:E72 +R51 MODIFY Arg1:E75 Arg2:E74 +T120 Biological_structure 1037 1052 last ileal loop +R52 MODIFY Arg1:T120 Arg2:E64 +T121 Sign_symptom 1091 1097 lesion +E76 Sign_symptom:T121 +A9 POLARITY E76 MAYBE_POS +T122 Biological_structure 1080 1090 pancreatic +R53 MODIFY Arg1:T122 Arg2:E76 +T123 Sign_symptom 1113 1124 enhancement +E77 Sign_symptom:T123 +T124 Biological_structure 1132 1162 caudal portion of the pancreas +T125 Sign_symptom 1177 1185 dilation +E78 Sign_symptom:T125 +T126 Severity 1170 1176 slight +R54 MODIFY Arg1:T126 Arg2:E78 +R55 MODIFY Arg1:T102 Arg2:E78 +R56 MODIFY Arg1:T124 Arg2:E77 +T127 Detailed_description 1104 1112 parietal +R57 MODIFY Arg1:T127 Arg2:E77 +T128 Detailed_description 1061 1074 cystic nature +R58 MODIFY Arg1:T128 Arg2:E76 +T129 Biological_structure 679 699 tail of the pancreas +R59 MODIFY Arg1:T129 Arg2:E79 +T130 Detailed_description 659 665 cystic +T131 Sign_symptom 666 671 image +E79 Sign_symptom:T131 +R60 MODIFY Arg1:T130 Arg2:E79 +T132 Sign_symptom 815 825 dilatation +E80 Sign_symptom:T132 +A10 POLARITY E80 NEG +T133 Biological_structure 799 814 pancreatic duct +R61 MODIFY Arg1:T133 Arg2:E80 +T134 Area 837 846 28 x 22mm +R62 MODIFY Arg1:T134 Arg2:E79 +T135 Sign_symptom 716 727 uncalcified +E81 Sign_symptom:T135 +T136 Sign_symptom 787 795 bourgeon +E82 Sign_symptom:T136 +#4 AnnotatorNotes E82 growth +T137 Biological_structure 775 786 endoluminal +R63 MODIFY Arg1:T137 Arg2:E82 +A11 POLARITY E82 NEG +R64 AFTER Arg1:E23 Arg2:E24 +* OVERLAP E24 E25 +R65 AFTER Arg1:E25 Arg2:E1 +R66 BEFORE Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 E4 E5 E6 E8 E9 E10 +R67 AFTER Arg1:E10 Arg2:E11 +* OVERLAP E11 E7 +R68 BEFORE Arg1:E7 Arg2:E12 +* OVERLAP E12 E13 +R69 BEFORE Arg1:E13 Arg2:E14 +* OVERLAP E14 E15 E21 E22 E30 E79 E81 E82 E80 E17 E18 E19 E20 E26 E64 E76 E77 E78 E55 E56 E57 E59 E60 E61 E62 E63 E32 E65 E31 E28 +#5 AnnotatorNotes T32 head of the pancreas? +A12 POLARITY E19 MAYBE_POS +A13 POLARITY E20 MAYBE_POS +R70 BEFORE Arg1:E28 Arg2:E66 +* OVERLAP E66 E67 E68 E69 E70 E71 +T138 Detailed_description 1614 1620 caudal +R71 MODIFY Arg1:T138 Arg2:E67 +R72 MODIFY Arg1:E69 Arg2:E70 +R73 MODIFY Arg1:E69 Arg2:E71 +R74 BEFORE Arg1:E71 Arg2:E27 +T139 Lab_value 1783 1793 uneventful +E83 Lab_value:T139 +R75 MODIFY Arg1:E83 Arg2:E27 +R76 BEFORE Arg1:E27 Arg2:E33 +* OVERLAP E33 E34 E35 E37 +R77 AFTER Arg1:E37 Arg2:E38 +R78 AFTER Arg1:E38 Arg2:E39 +* OVERLAP E39 E40 E72 E74 E48 E49 E51 E53 E54 +R79 BEFORE Arg1:E54 Arg2:E41 +* OVERLAP E41 E42 E43 E46 E44