--- a +++ b/processing/MACCROBAT/27906105.ann @@ -0,0 +1,223 @@ +T1 Age 22 33 58-year-old +T2 Personal_background 34 39 white +T3 Personal_background 40 48 Hispanic +T4 Sex 49 54 woman +T5 History 62 104 history of uveal melanoma in her right eye +T6 Clinical_event 122 130 admitted +E1 Clinical_event:T6 +T7 Sign_symptom 152 160 jaundice +E2 Sign_symptom:T7 +T8 Sign_symptom 175 179 pain +E3 Sign_symptom:T8 +T9 Biological_structure 165 174 abdominal +R1 MODIFY Arg1:T9 Arg2:E3 +T10 Duration 184 191 10 days +E4 Duration:T10 +T11 Diagnostic_procedure 207 223 laboratory tests +E5 Diagnostic_procedure:T11 +T12 Diagnostic_procedure 241 261 complete blood count +E6 Diagnostic_procedure:T12 +T13 Diagnostic_procedure 288 295 amylase +E7 Diagnostic_procedure:T13 +T14 Diagnostic_procedure 306 321 total bilirubin +E8 Diagnostic_procedure:T14 +R2 SUB_PROCEDURE Arg1:E6 Arg2:E5 +R3 SUB_PROCEDURE Arg1:E7 Arg2:E5 +R4 SUB_PROCEDURE Arg1:E8 Arg2:E5 +T15 Lab_value 266 286 within normal limits +R5 MODIFY Arg1:T15 Arg2:E6 +T16 Lab_value 297 304 136 U/L +R6 MODIFY Arg1:T16 Arg2:E7 +T17 Lab_value 323 333 6.37 mg/dL +T18 Diagnostic_procedure 341 356 direct fraction +E9 Diagnostic_procedure:T18 +R7 SUB_PROCEDURE Arg1:E9 Arg2:E8 +T19 Lab_value 360 370 5.30 mg/dL +R8 MODIFY Arg1:T19 Arg2:E9 +T20 Diagnostic_procedure 400 419 computed tomography +E10 Diagnostic_procedure:T20 +T21 Diagnostic_procedure 421 423 CT +E11 Diagnostic_procedure:T21 +R9 IDENTICAL Arg1:E11 Arg2:E10 +T22 Biological_structure 390 399 abdominal +T23 Detailed_description 373 388 Cross-sectional +R10 MODIFY Arg1:T22 Arg2:E10 +R11 MODIFY Arg1:T23 Arg2:E10 +T24 Detailed_description 425 438 with contrast +R12 MODIFY Arg1:T24 Arg2:E10 +T25 Sign_symptom 465 471 lesion +E12 Sign_symptom:T25 +T26 Detailed_description 449 464 low-attenuating +R13 MODIFY Arg1:T26 Arg2:E12 +T27 Biological_structure 489 504 pancreatic head +T28 Area 516 524 4 × 3 cm +R14 MODIFY Arg1:T27 Arg2:E12 +R15 MODIFY Arg1:T28 Arg2:E12 +T29 Biological_structure 532 571 thinner section of the distal bile duct +R16 MODIFY Arg1:T29 Arg2:E12 +T30 Diagnostic_procedure 666 673 EUS-FNA +E13 Diagnostic_procedure:T30 +#1 AnnotatorNotes E13 Endoscopic ultrasound fine needle aspiration biopsy +T31 Clinical_event 609 634 multidisciplinary meeting +E14 Clinical_event:T31 +T32 Coreference 675 678 EUS +E15 Coreference:T32 +R17 IDENTICAL Arg1:E15 Arg2:E13 +T33 Sign_symptom 887 918 vascular or lymph node invasion +E16 Sign_symptom:T33 +A1 POLARITY E16 NEG +T34 Coreference 931 938 EUS-FNA +E17 Coreference:T34 +R18 IDENTICAL Arg1:E17 Arg2:E13 +T35 Sign_symptom 758 764 lesion +E18 Sign_symptom:T35 +T36 Detailed_description 688 693 solid +T37 Detailed_description 695 707 heteroechoic +T38 Detailed_description 713 743 predominantly hypoechoic areas +T39 Detailed_description 745 757 well-defined +R19 MODIFY Arg1:T39 Arg2:E18 +R20 MODIFY Arg1:T38 Arg2:E18 +R21 MODIFY Arg1:T37 Arg2:E18 +R22 MODIFY Arg1:T36 Arg2:E18 +T40 Texture 770 786 regular contours +R23 MODIFY Arg1:T40 Arg2:E18 +T41 Area 798 810 3.1 × 2.6 cm +R24 MODIFY Arg1:T41 Arg2:E18 +T42 Biological_structure 823 864 between the head and neck of the pancreas +R25 MODIFY Arg1:T42 Arg2:E18 +T43 Detailed_description 953 970 with a 22G needle +T44 Detailed_description 971 998 using the fanning technique +R26 MODIFY Arg1:T43 Arg2:E17 +R27 MODIFY Arg1:T44 Arg2:E17 +T45 Diagnostic_procedure 1007 1025 cytology specimens +E19 Diagnostic_procedure:T45 +T46 Lab_value 1062 1091 discohesive dispersed pattern +R28 MODIFY Arg1:T46 Arg2:E19 +T47 Lab_value 1105 1132 variation in size and shape +T48 Shape 1143 1154 epithelioid +T49 Shape 1159 1173 spindle-shaped +T50 Biological_structure 1039 1044 cells +T51 Biological_structure 1174 1179 cells +T52 Shape 1185 1197 plasmacytoid +T53 Shape 1202 1207 round +T54 Biological_structure 1208 1214 nuclei +R29 MODIFY Arg1:T53 Arg2:T54 +R30 MODIFY Arg1:T52 Arg2:T54 +R31 MODIFY Arg1:T54 Arg2:T51 +R32 MODIFY Arg1:T49 Arg2:T51 +R33 MODIFY Arg1:T48 Arg2:T51 +R34 MODIFY Arg1:T46 Arg2:T50 +R35 MODIFY Arg1:T47 Arg2:T51 +R36 MODIFY Arg1:T50 Arg2:E19 +R37 MODIFY Arg1:T51 Arg2:E19 +T55 Sign_symptom 1453 1461 necrosis +E20 Sign_symptom:T55 +T56 Sign_symptom 1466 1476 hemorrhage +E21 Sign_symptom:T56 +T57 Diagnostic_procedure 1220 1237 nuclear chromatin +E22 Diagnostic_procedure:T57 +T58 Lab_value 1241 1249 clumping +T59 Lab_value 1254 1263 irregular +T60 Lab_value 1269 1301 excessive parachromatin clearing +T61 Biological_structure 1332 1345 macronucleoli +T62 Detailed_description 1323 1331 multiple +T63 Detailed_description 1313 1319 single +R38 MODIFY Arg1:T62 Arg2:T61 +R39 MODIFY Arg1:T63 Arg2:T61 +T64 Biological_structure 1360 1369 cytoplasm +T65 Detailed_description 1351 1359 abundant +R40 MODIFY Arg1:T65 Arg2:T64 +T66 Lab_value 1375 1403 deep brownish-black granules +R41 MODIFY Arg1:T58 Arg2:E22 +R42 MODIFY Arg1:T59 Arg2:E22 +R43 MODIFY Arg1:T60 Arg2:E22 +R44 MODIFY Arg1:T61 Arg2:E22 +R45 MODIFY Arg1:T64 Arg2:E22 +R46 MODIFY Arg1:T66 Arg2:E22 +T67 Therapeutic_procedure 1514 1526 exenteration +E23 Therapeutic_procedure:T67 +T68 Therapeutic_procedure 1543 1564 duodenopancreatectomy +E24 Therapeutic_procedure:T68 +T69 Detailed_description 1570 1587 Whipple procedure +R47 MODIFY Arg1:T69 Arg2:E24 +T70 Biological_structure 1500 1513 right orbital +R48 MODIFY Arg1:T70 Arg2:E23 +T71 Sign_symptom 1602 1615 complications +E25 Sign_symptom:T71 +A2 POLARITY E25 NEG +T72 Diagnostic_procedure 1629 1646 surgical specimen +E26 Diagnostic_procedure:T72 +T73 Biological_structure 1671 1676 cells +T74 Detailed_description 1654 1670 undifferentiated +R49 MODIFY Arg1:T74 Arg2:T73 +R50 MODIFY Arg1:T73 Arg2:E26 +T75 Lab_value 1683 1720 extended disposition of brown pigment +T76 Biological_structure 1739 1747 pancreas +T77 Biological_structure 1756 1783 serosa of the duodenal wall +T78 Sign_symptom 1722 1734 infiltrating +E27 Sign_symptom:T78 +R51 MODIFY Arg1:T76 Arg2:E27 +R52 MODIFY Arg1:T77 Arg2:E27 +R53 MODIFY Arg1:T75 Arg2:E26 +R54 MODIFY Arg1:E27 Arg2:T73 +T79 Diagnostic_procedure 1785 1805 Immunohistochemistry +E28 Diagnostic_procedure:T79 +T80 Diagnostic_procedure 1823 1830 Melan-A +E29 Diagnostic_procedure:T80 +T81 Diagnostic_procedure 1832 1837 HMB45 +E30 Diagnostic_procedure:T81 +T82 Diagnostic_procedure 1839 1847 vimentin +E31 Diagnostic_procedure:T82 +T83 Diagnostic_procedure 1849 1862 S-100 protein +E32 Diagnostic_procedure:T83 +T84 Diagnostic_procedure 1880 1891 cytokeratin +E33 Diagnostic_procedure:T84 +T85 Disease_disorder 1934 1942 melanoma +E34 Disease_disorder:T85 +T86 Detailed_description 1924 1933 malignant +R55 MODIFY Arg1:T86 Arg2:E34 +T87 Detailed_description 1913 1923 metastatic +R56 MODIFY Arg1:T87 Arg2:E34 +T88 Lab_value 1867 1875 negative +T89 Lab_value 1810 1818 positive +R57 SUB_PROCEDURE Arg1:E29 Arg2:E28 +R58 SUB_PROCEDURE Arg1:E30 Arg2:E28 +R59 SUB_PROCEDURE Arg1:E31 Arg2:E28 +R60 SUB_PROCEDURE Arg1:E32 Arg2:E28 +R61 MODIFY Arg1:T88 Arg2:E33 +R62 MODIFY Arg1:T89 Arg2:E29 +R63 MODIFY Arg1:T89 Arg2:E30 +R64 MODIFY Arg1:T89 Arg2:E31 +R65 MODIFY Arg1:T89 Arg2:E32 +T90 Medication 1993 2005 chemotherapy +E35 Medication:T90 +T91 Detailed_description 1984 1992 adjuvant +R66 MODIFY Arg1:T91 Arg2:E35 +T92 Date 1944 1957 At the moment +E36 Date:T92 +T93 Nonbiological_location 2012 2035 outside oncology clinic +R67 MODIFY Arg1:T93 Arg2:E35 +* OVERLAP E1 E2 E3 E4 +R68 MODIFY Arg1:E4 Arg2:E3 +R69 MODIFY Arg1:E4 Arg2:E2 +R70 BEFORE Arg1:E4 Arg2:E5 +R71 BEFORE Arg1:E5 Arg2:E10 +* OVERLAP E10 E12 +R72 BEFORE Arg1:E12 Arg2:E14 +R73 BEFORE Arg1:E14 Arg2:E13 +* OVERLAP E13 E18 E16 +R74 BEFORE Arg1:E16 Arg2:E19 +T94 Diagnostic_procedure 1436 1446 background +E37 Diagnostic_procedure:T94 +R75 SUB_PROCEDURE Arg1:E37 Arg2:E19 +R76 MODIFY Arg1:E20 Arg2:E37 +R77 MODIFY Arg1:E21 Arg2:E37 +* OVERLAP E19 E22 +R78 BEFORE Arg1:E22 Arg2:E23 +R79 BEFORE Arg1:E23 Arg2:E24 +* OVERLAP E24 E25 +R80 BEFORE Arg1:E25 Arg2:E26 +* OVERLAP E26 E28 E34 +R81 SUB_PROCEDURE Arg1:E33 Arg2:E28 +R82 BEFORE Arg1:E34 Arg2:E36 +* OVERLAP E36 E35