--- a +++ b/processing/MACCROBAT/27218632.ann @@ -0,0 +1,206 @@ +T1 Age 2 13 50-year old +T2 Sex 14 17 man +T3 Diagnostic_procedure 1909 1913 zinc +E1 Diagnostic_procedure:T3 +T4 Lab_value 1923 1931 29 ug/dL +R1 MODIFY Arg1:T4 Arg2:E1 +T5 Medication 1973 1993 zinc supplementation +E2 Medication:T5 +T6 Outcome 2255 2266 passed away +E3 Outcome:T6 +T7 Disease_disorder 56 82 appendiceal adenocarcinoma +E4 Disease_disorder:T7 +T8 Detailed_description 47 55 mucinous +T9 Detailed_description 36 46 metastatic +R2 MODIFY Arg1:T8 Arg2:E4 +R3 MODIFY Arg1:T9 Arg2:E4 +T10 Clinical_event 83 91 presents +E5 Clinical_event:T10 +T11 Sign_symptom 125 129 rash +E6 Sign_symptom:T11 +T12 Detailed_description 112 124 desquamating +R4 MODIFY Arg1:T12 Arg2:E6 +T13 Biological_structure 137 141 face +R5 MODIFY Arg1:T13 Arg2:E6 +T14 Biological_structure 165 170 scalp +R6 MODIFY Arg1:T14 Arg2:E6 +T15 Biological_structure 172 187 inguinal region +R7 MODIFY Arg1:T15 Arg2:E6 +T16 Biological_structure 193 201 perineum +R8 MODIFY Arg1:T16 Arg2:E6 +T17 History 36 82 metastatic mucinous appendiceal adenocarcinoma +T18 Duration 202 224 over the past 4 months +E7 Duration:T18 +T19 Sign_symptom 241 245 rash +E8 Sign_symptom:T19 +T20 Disease_disorder 278 286 alopecia +E9 Disease_disorder:T20 +T21 Detailed_description 270 277 diffuse +R9 MODIFY Arg1:T21 Arg2:E9 +T22 Biological_structure 294 298 face +T23 Biological_structure 300 305 scalp +T24 Biological_structure 307 313 axilla +T25 Biological_structure 319 324 groin +R10 MODIFY Arg1:T22 Arg2:E9 +R11 MODIFY Arg1:T23 Arg2:E9 +R12 MODIFY Arg1:T24 Arg2:E9 +R13 MODIFY Arg1:T25 Arg2:E9 +T26 Sign_symptom 358 362 rash +E10 Sign_symptom:T26 +A1 TREND E10 STAY +T27 Medication 395 406 fluconazole +E11 Medication:T27 +T28 Administration 390 394 oral +R14 MODIFY Arg1:T28 Arg2:E11 +T29 Administration 408 415 topical +T30 Medication 416 426 antibiotic +E12 Medication:T30 +T31 Administration 427 435 ointment +R15 MODIFY Arg1:T31 Arg2:E12 +R16 MODIFY Arg1:T29 Arg2:E12 +T32 Administration 441 452 intravenous +T33 Medication 453 464 antibiotics +E13 Medication:T33 +R17 MODIFY Arg1:T32 Arg2:E13 +T34 Dosage 371 386 multiple rounds +R18 MODIFY Arg1:T34 Arg2:E11 +R19 MODIFY Arg1:T34 Arg2:E12 +R20 MODIFY Arg1:T34 Arg2:E13 +T35 Medication 529 541 chemotherapy +E14 Medication:T35 +T36 Detailed_description 517 528 neoadjuvant +R21 MODIFY Arg1:T36 Arg2:E14 +T37 Therapeutic_procedure 554 572 surgical resection +E15 Therapeutic_procedure:T37 +T38 Therapeutic_procedure 587 596 colostomy +E16 Therapeutic_procedure:T38 +T39 Therapeutic_procedure 613 632 surgical correction +E17 Therapeutic_procedure:T39 +#1 AnnotatorNotes E17 Though the surgery failed, it was still done, so it's still annotated +T40 Disease_disorder 640 663 enterocutaneous fistula +E18 Disease_disorder:T40 +T41 Therapeutic_procedure 685 711 total parenteral nutrition +E19 Therapeutic_procedure:T41 +T42 Therapeutic_procedure 713 716 TPN +E20 Therapeutic_procedure:T42 +R22 IDENTICAL Arg1:E20 Arg2:E19 +T43 Duration 726 735 past year +E21 Duration:T43 +T44 Sign_symptom 771 795 changes in ostomy output +E22 Sign_symptom:T44 +A2 POLARITY E22 NEG +T45 Diagnostic_procedure 814 840 Dermatological examination +E23 Diagnostic_procedure:T45 +T46 Sign_symptom 873 880 plaques +E24 Sign_symptom:T46 +T47 Detailed_description 860 872 erythematous +T48 Detailed_description 849 859 widespread +R23 MODIFY Arg1:T48 Arg2:E24 +R24 MODIFY Arg1:T47 Arg2:E24 +T49 Biological_structure 888 892 face +T50 Biological_structure 894 899 scalp +T51 Biological_structure 905 928 medial aspect of thighs +R25 MODIFY Arg1:T49 Arg2:E24 +R26 MODIFY Arg1:T50 Arg2:E24 +R27 MODIFY Arg1:T51 Arg2:E24 +T53 Sign_symptom 955 962 papules +E26 Sign_symptom:T53 +T52 Detailed_description 968 975 scaling +R28 MODIFY Arg1:T52 Arg2:E26 +T54 Detailed_description 945 954 scattered +R29 MODIFY Arg1:T54 Arg2:E26 +T55 Detailed_description 929 940 bilaterally +R30 MODIFY Arg1:T55 Arg2:T51 +T56 Biological_structure 979 983 face +T57 Biological_structure 985 990 scalp +T58 Biological_structure 992 997 chest +T59 Biological_structure 1003 1007 back +R31 MODIFY Arg1:T56 Arg2:E26 +R32 MODIFY Arg1:T57 Arg2:E26 +R33 MODIFY Arg1:T58 Arg2:E26 +R34 MODIFY Arg1:T59 Arg2:E26 +T60 Disease_disorder 1031 1039 alopecia +E25 Disease_disorder:T60 +T61 Detailed_description 1018 1030 non-scarring +T62 Detailed_description 1009 1016 Diffuse +R35 MODIFY Arg1:T61 Arg2:E25 +R36 MODIFY Arg1:T62 Arg2:E25 +T63 Biological_structure 1058 1062 face +T64 Biological_structure 1064 1069 scalp +T65 Biological_structure 1071 1078 axillae +T66 Biological_structure 1084 1089 groin +R37 MODIFY Arg1:T63 Arg2:E25 +R38 MODIFY Arg1:T64 Arg2:E25 +R39 MODIFY Arg1:T65 Arg2:E25 +R40 MODIFY Arg1:T66 Arg2:E25 +T67 Disease_disorder 1116 1118 AE +E27 Disease_disorder:T67 +#2 AnnotatorNotes E27 acrodermatitis enteropathica +T68 Disease_disorder 1160 1175 zinc deficiency +E28 Disease_disorder:T68 +R41 CAUSE Arg1:E28 Arg2:E27 +T69 Disease_disorder 1209 1224 zinc deficiency +E29 Disease_disorder:T69 +T70 Detailed_description 1200 1208 acquired +R42 MODIFY Arg1:T70 Arg2:E29 +T71 Medication 1254 1274 zinc supplementation +E30 Medication:T71 +T72 Lab_value 1243 1253 inadequate +R43 MODIFY Arg1:T72 Arg2:E30 +T73 Therapeutic_procedure 1278 1281 TPN +E31 Therapeutic_procedure:T73 +#3 AnnotatorNotes E31 Total Parenteral Nutrition +R44 SUB_PROCEDURE Arg1:E30 Arg2:E31 +T74 Other_event 1363 1380 national shortage +E32 Other_event:T74 +#4 AnnotatorNotes E32 a zinc shortage, specifically +T75 Medication 1312 1326 trace elements +E33 Medication:T75 +A3 POLARITY E33 NEG +#5 AnnotatorNotes E33 including zinc +T76 Date 2017 2026 one month +E34 Date:T76 +T77 Therapeutic_procedure 2001 2004 TPN +E35 Therapeutic_procedure:T77 +R45 SUB_PROCEDURE Arg1:E2 Arg2:E35 +T78 Sign_symptom 2067 2071 rash +E36 Sign_symptom:T78 +A4 POLARITY E36 NEG +T79 Sign_symptom 2076 2083 fatigue +E37 Sign_symptom:T79 +A5 POLARITY E37 NEG +T80 Sign_symptom 2107 2118 hair growth +E38 Sign_symptom:T80 +A6 TREND E38 INC +T81 Diagnostic_procedure 2138 2148 zinc level +E39 Diagnostic_procedure:T81 +T82 Lab_value 2179 2187 90 ug/dL +R46 MODIFY Arg1:T82 Arg2:E39 +T83 Disease_disorder 2229 2244 zinc deficiency +E40 Disease_disorder:T83 +A7 POLARITY E40 NEG +R47 BEFORE Arg1:E4 Arg2:E5 +* OVERLAP E5 E6 E7 E8 E9 +R48 BEFORE Arg1:E9 Arg2:E10 +R49 AFTER Arg1:E10 Arg2:E11 +* OVERLAP E11 E12 E13 +R50 AFTER Arg1:E13 Arg2:E14 +R51 BEFORE Arg1:E14 Arg2:E15 +R52 BEFORE Arg1:E15 Arg2:E16 +R53 AFTER Arg1:E16 Arg2:E17 +R54 AFTER Arg1:E17 Arg2:E18 +R55 BEFORE Arg1:E18 Arg2:E19 +* OVERLAP E19 E21 E22 +R56 BEFORE Arg1:E22 Arg2:E23 +* OVERLAP E23 E24 E26 E25 E27 E28 E29 +T84 Duration 1345 1353 one year +E41 Duration:T84 +R57 AFTER Arg1:E29 Arg2:E30 +* OVERLAP E30 E33 E41 E32 +R58 CAUSE Arg1:E32 Arg2:E33 +R59 BEFORE Arg1:E32 Arg2:E1 +R60 BEFORE Arg1:E1 Arg2:E2 +R61 BEFORE Arg1:E2 Arg2:E34 +* OVERLAP E34 E36 E37 E38 E39 +R62 BEFORE Arg1:E39 Arg2:E40 +R63 BEFORE Arg1:E40 Arg2:E3