--- a +++ b/processing/MACCROBAT/27059701.ann @@ -0,0 +1,207 @@ +T1 Age 2 13 50-year-old +T2 Sex 14 18 lady +T3 Clinical_event 19 28 presented +E1 Clinical_event:T3 +T4 Sign_symptom 48 52 pain +E2 Sign_symptom:T4 +T5 Biological_structure 53 60 abdomen +R1 MODIFY Arg1:T5 Arg2:E2 +T6 Sign_symptom 65 73 jaundice +E3 Sign_symptom:T6 +T7 Duration 78 99 one and a half months +E4 Duration:T7 +T8 Sign_symptom 145 150 fever +E5 Sign_symptom:T8 +T9 Detailed_description 124 136 intermittent +R2 MODIFY Arg1:T9 Arg2:E5 +T10 Duration 158 169 last 1 week +E6 Duration:T10 +T11 Diagnostic_procedure 171 191 Physical examination +E7 Diagnostic_procedure:T11 +T12 Sign_symptom 213 220 icterus +E8 Sign_symptom:T12 +#1 AnnotatorNotes E8 jaundice +T13 Sign_symptom 252 256 mass +E9 Sign_symptom:T13 +T14 Shape 243 251 globular +R3 MODIFY Arg1:T14 Arg2:E9 +T15 Detailed_description 236 242 tender +T16 Detailed_description 227 235 palpable +R4 MODIFY Arg1:T15 Arg2:E9 +R5 MODIFY Arg1:T16 Arg2:E9 +T17 Biological_structure 264 283 right hypochondrium +R6 MODIFY Arg1:T17 Arg2:E9 +T18 Area 294 302 3 × 3 cm +R7 MODIFY Arg1:T18 Arg2:E9 +T19 Sign_symptom 340 348 jaundice +E10 Sign_symptom:T19 +T20 Detailed_description 328 339 obstructive +R8 MODIFY Arg1:T20 Arg2:E10 +T21 Disease_disorder 362 385 periampullary carcinoma +E11 Disease_disorder:T21 +T22 Diagnostic_procedure 396 424 Ultrasonographic examination +E12 Diagnostic_procedure:T22 +T23 Biological_structure 432 439 abdomen +R9 MODIFY Arg1:T23 Arg2:E12 +T24 Biological_structure 444 450 pelvis +R10 MODIFY Arg1:T24 Arg2:E12 +T25 Sign_symptom 460 507 dilatation of the intrahepatic biliary radicles +E13 Sign_symptom:T25 +T26 Biological_structure 478 507 intrahepatic biliary radicles +T27 Biological_structure 509 513 IHBR +R11 IDENTICAL Arg1:T27 Arg2:T26 +R12 MODIFY Arg1:T26 Arg2:E13 +T28 Sign_symptom 544 555 gall stones +E14 Sign_symptom:T28 +T29 Detailed_description 537 543 mobile +T30 Detailed_description 521 529 multiple +R13 MODIFY Arg1:T30 Arg2:E14 +R14 MODIFY Arg1:T29 Arg2:E14 +T31 Sign_symptom 562 586 dilated common bile duct +E15 Sign_symptom:T31 +T32 Biological_structure 570 586 common bile duct +T33 Biological_structure 588 591 CBD +R15 IDENTICAL Arg1:T33 Arg2:T32 +T34 Distance 603 609 1.8 cm +T35 Detailed_description 615 649 sudden narrowing at its distal end +R16 MODIFY Arg1:T34 Arg2:E15 +R17 MODIFY Arg1:T35 Arg2:E15 +T36 Diagnostic_procedure 651 658 CT scan +E16 Diagnostic_procedure:T36 +T37 Sign_symptom 675 732 dilatation of the extra and intrahepatic biliary radicles +E17 Sign_symptom:T37 +T38 Severity 666 674 moderate +R18 MODIFY Arg1:T38 Arg2:E17 +T39 Sign_symptom 734 748 cholelithiasis +E18 Sign_symptom:T39 +#2 AnnotatorNotes E18 Gallstones +T40 Sign_symptom 765 800 thickening of the gall bladder wall +E19 Sign_symptom:T40 +T41 Biological_structure 808 814 fundus +R19 MODIFY Arg1:T41 Arg2:E19 +T42 Sign_symptom 833 842 stricture +E20 Sign_symptom:T42 +T43 Biological_attribute 822 832 distal CBD +R20 MODIFY Arg1:T43 Arg2:E20 +T44 Sign_symptom 881 891 metastasis +E21 Sign_symptom:T44 +A1 POLARITY E21 NEG +T45 Disease_disorder 929 952 periampullary carcinoma +E22 Disease_disorder:T45 +T46 Disease_disorder 958 979 chronic cholecystitis +E23 Disease_disorder:T46 +#3 AnnotatorNotes E23 this is a disease because it's chronic +T47 Therapeutic_procedure 1020 1043 pancreaticoduodenectomy +E24 Therapeutic_procedure:T47 +T48 Therapeutic_procedure 1045 1064 Whipple’s procedure +E25 Therapeutic_procedure:T48 +R21 IDENTICAL Arg1:E25 Arg2:E24 +T49 Clinical_event 1006 1013 planned +E26 Clinical_event:T49 +T50 Therapeutic_procedure 1120 1139 Whipple’s procedure +E27 Therapeutic_procedure:T50 +T51 Diagnostic_procedure 1141 1158 table examination +E28 Diagnostic_procedure:T51 +T52 Biological_structure 1166 1183 resected specimen +R22 MODIFY Arg1:T52 Arg2:E28 +T53 Sign_symptom 1202 1213 gall stones +E29 Sign_symptom:T53 +T54 Detailed_description 1193 1201 multiple +T55 Biological_structure 1221 1233 gall bladder +R23 MODIFY Arg1:T54 Arg2:E29 +R24 MODIFY Arg1:T55 Arg2:E29 +T56 Sign_symptom 1247 1265 mucosal thickening +E30 Sign_symptom:T56 +T57 Biological_structure 1273 1279 fundus +R25 MODIFY Arg1:T57 Arg2:E30 +T58 Sign_symptom 1313 1319 growth +E31 Sign_symptom:T58 +T59 Detailed_description 1287 1296 irregular +T60 Detailed_description 1297 1312 circumferential +R26 MODIFY Arg1:T60 Arg2:E31 +R27 MODIFY Arg1:T59 Arg2:E31 +T61 Biological_structure 1334 1368 intrapancreatic portion of the CBD +R28 MODIFY Arg1:T61 Arg2:E31 +T62 Therapeutic_procedure 1370 1390 Postoperative period +E32 Therapeutic_procedure:T62 +T63 Lab_value 1395 1405 uneventful +R29 MODIFY Arg1:T63 Arg2:E32 +T64 Clinical_event 1423 1432 recovered +E33 Clinical_event:T64 +T65 Lab_value 1433 1447 satisfactorily +R30 MODIFY Arg1:T65 Arg2:E33 +T66 Diagnostic_procedure 1449 1478 Histopathological examination +E34 Diagnostic_procedure:T66 +T67 Biological_structure 1486 1503 resected specimen +R31 MODIFY Arg1:T67 Arg2:E34 +T68 Sign_symptom 1529 1564 thickening of the gall bladder wall +E35 Sign_symptom:T68 +T69 Biological_structure 1572 1578 fundus +R32 MODIFY Arg1:T69 Arg2:E35 +T70 Sign_symptom 1599 1606 calculi +E36 Sign_symptom:T70 +#4 AnnotatorNotes E36 stones +T71 Detailed_description 1593 1598 small +T72 Detailed_description 1584 1592 multiple +R33 MODIFY Arg1:T71 Arg2:E36 +R34 MODIFY Arg1:T72 Arg2:E36 +T73 Distance 1630 1636 1.4 cm +R35 MODIFY Arg1:T73 Arg2:E36 +T74 Disease_disorder 1721 1735 adenocarcinoma +E37 Disease_disorder:T74 +A2 POLARITY E37 UNCERTAIN +T75 Biological_structure 1751 1757 mucosa +R36 MODIFY Arg1:T75 Arg2:E37 +T76 Diagnostic_procedure 1759 1779 Microscopic sections +E38 Diagnostic_procedure:T76 +T77 Disease_disorder 1823 1837 adenocarcinoma +E39 Disease_disorder:T77 +T78 Biological_structure 1845 1861 common bile duct +R37 MODIFY Arg1:T78 Arg2:E39 +T79 Biological_structure 1798 1815 distal CBD region +R38 MODIFY Arg1:T79 Arg2:E38 +T80 Detailed_description 1867 1875 invasion +R39 MODIFY Arg1:T80 Arg2:E39 +T81 Biological_structure 1885 1914 muscular wall of the duodenum +R40 MODIFY Arg1:T81 Arg2:T80 +T82 Diagnostic_procedure 1916 1924 Sections +E40 Diagnostic_procedure:T82 +T83 Biological_structure 1942 1962 resected lymph nodes +R41 MODIFY Arg1:T83 Arg2:E40 +T84 Sign_symptom 1976 1987 tumor cells +E41 Sign_symptom:T84 +A3 POLARITY E41 NEG +R42 MODIFY Arg1:E41 Arg2:E40 +T85 Medication 2163 2179 adjuvant therapy +E42 Medication:T85 +A4 POLARITY E42 NEG +T86 Date 2210 2231 2 years after surgery +E43 Date:T86 +T87 Sign_symptom 2197 2204 disease +E44 Sign_symptom:T87 +A5 POLARITY E44 NEG +T88 Disease_disorder 2028 2042 adenocarcinoma +E45 Disease_disorder:T88 +T89 Biological_structure 2050 2062 gall bladder +R43 MODIFY Arg1:T89 Arg2:E45 +T90 Detailed_description 2015 2023 pT1aN0M0 +R44 MODIFY Arg1:T90 Arg2:E45 +T91 Disease_disorder 2079 2093 adenocarcinoma +E46 Disease_disorder:T91 +T92 Biological_structure 2101 2111 distal CBD +R45 MODIFY Arg1:T92 Arg2:E46 +T93 Detailed_description 2067 2074 pT2N0M0 +R46 MODIFY Arg1:T93 Arg2:E46 +R47 AFTER Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 E4 +R48 BEFORE Arg1:E4 Arg2:E5 +* OVERLAP E5 E6 +R49 BEFORE Arg1:E6 Arg2:E7 +* OVERLAP E7 E8 E9 E10 E11 E12 E13 E14 E15 E16 E17 E18 E19 E20 E21 +R50 BEFORE Arg1:E21 Arg2:E22 +* OVERLAP E22 E23 E26 E24 +R51 BEFORE Arg1:E24 Arg2:E27 +R52 BEFORE Arg1:E27 Arg2:E28 +* OVERLAP E28 E29 E30 E31 E32 E33 E34 E35 E36 E37 E38 E39 E40 E41 E45 E46 E42 +R53 BEFORE Arg1:E42 Arg2:E44 +* OVERLAP E44 E43