--- a +++ b/processing/MACCROBAT/27004009.ann @@ -0,0 +1,337 @@ +T1 Age 2 13 65-year-old +T2 Sex 14 17 man +T3 Clinical_event 22 30 admitted +E1 Clinical_event:T3 +T4 Nonbiological_location 38 69 China-Japan Friendship hospital +R1 MODIFY Arg1:T4 Arg2:E1 +T5 Sign_symptom 108 117 dysphagia +E2 Sign_symptom:T5 +T6 Duration 122 126 3 mo +E3 Duration:T6 +T7 Detailed_description 96 107 progressive +R2 MODIFY Arg1:T7 Arg2:E2 +T8 Sign_symptom 160 171 weight loss +E4 Sign_symptom:T8 +T9 Lab_value 175 179 8 kg +R3 MODIFY Arg1:T9 Arg2:E4 +T10 Duration 187 196 past 2 mo +E5 Duration:T10 +T11 Severity 152 159 drastic +R4 MODIFY Arg1:T11 Arg2:E4 +T12 History 201 264 denied a history of smoking, alcohol intake and substance abuse +T13 History 293 302 gastritis +T14 Duration 307 322 nearly 10 years +E6 Duration:T14 +T15 Disease_disorder 293 302 gastritis +E7 Disease_disorder:T15 +T16 Detailed_description 284 292 atrophic +T17 Detailed_description 276 283 chronic +R5 MODIFY Arg1:T16 Arg2:E7 +R6 MODIFY Arg1:T17 Arg2:E7 +T18 Family_history 340 389 no family history of genetic defect or malignancy +T19 Diagnostic_procedure 391 411 Physical examination +E8 Diagnostic_procedure:T19 +T20 Lab_value 419 439 no palpable findings +R7 MODIFY Arg1:T20 Arg2:E8 +T21 Diagnostic_procedure 451 461 blood test +E9 Diagnostic_procedure:T21 +T22 Diagnostic_procedure 490 500 hemoglobin +E10 Diagnostic_procedure:T22 +T23 Lab_value 471 486 slight decrease +R8 MODIFY Arg1:T23 Arg2:E10 +R9 SUB_PROCEDURE Arg1:E10 Arg2:E9 +T24 Lab_value 502 509 106 g/L +R10 MODIFY Arg1:T24 Arg2:E10 +T25 Diagnostic_procedure 540 551 examination +E11 Diagnostic_procedure:T25 +T26 Biological_structure 512 534 Upper gastrointestinal +T27 Biological_structure 536 538 GI +R11 IDENTICAL Arg1:T27 Arg2:T26 +R12 MODIFY Arg1:T26 Arg2:E11 +T28 Detailed_description 558 574 barium contrasts +R13 MODIFY Arg1:T28 Arg2:E11 +T29 Sign_symptom 590 595 tumor +E12 Sign_symptom:T29 +T30 Severity 584 589 large +R14 MODIFY Arg1:T30 Arg2:E12 +T31 Sign_symptom 596 604 blocking +E13 Sign_symptom:T31 +T32 Biological_structure 609 634 esophago-gastric junction +R15 MODIFY Arg1:T32 Arg2:E13 +R16 CAUSE Arg1:E12 Arg2:E13 +T33 Diagnostic_procedure 648 667 Computed tomography +E14 Diagnostic_procedure:T33 +T34 Diagnostic_procedure 669 671 CT +E15 Diagnostic_procedure:T34 +R17 IDENTICAL Arg1:E15 Arg2:E14 +T35 Sign_symptom 694 698 mass +E16 Sign_symptom:T35 +T36 Texture 689 693 soft +R18 MODIFY Arg1:T36 Arg2:E16 +T37 Biological_structure 706 731 esophago-gastric junction +R19 MODIFY Arg1:T37 Arg2:E16 +T38 Sign_symptom 748 758 metastasis +E17 Sign_symptom:T38 +T39 Biological_structure 737 747 lymph node +R20 MODIFY Arg1:T39 Arg2:E17 +T40 Biological_structure 766 797 lesser curvature of the stomach +R21 MODIFY Arg1:T40 Arg2:E17 +T41 Diagnostic_procedure 811 833 Endoscopic examination +E18 Diagnostic_procedure:T41 +T42 Sign_symptom 849 853 spot +E19 Sign_symptom:T42 +T43 Color 843 848 black +R22 MODIFY Arg1:T43 Arg2:E19 +T44 Biological_structure 861 876 lower esophagus +R23 MODIFY Arg1:T44 Arg2:E19 +T45 Sign_symptom 895 899 mass +E20 Sign_symptom:T45 +T46 Color 889 894 black +T47 Detailed_description 883 888 bulky +R24 MODIFY Arg1:T46 Arg2:E20 +R25 MODIFY Arg1:T47 Arg2:E20 +T48 Sign_symptom 900 908 blocking +E21 Sign_symptom:T48 +T49 Biological_structure 913 938 esophago-gastric junction +R26 MODIFY Arg1:T49 Arg2:E21 +R27 CAUSE Arg1:E20 Arg2:E21 +T50 Sign_symptom 973 979 ulcers +E22 Sign_symptom:T50 +T51 Shape 961 972 crater-like +T52 Color 955 960 black +T53 Detailed_description 951 954 two +R28 MODIFY Arg1:T51 Arg2:E22 +R29 MODIFY Arg1:T52 Arg2:E22 +R30 MODIFY Arg1:T53 Arg2:E22 +T54 Biological_structure 987 1008 fundus of the stomach +R31 MODIFY Arg1:T54 Arg2:E22 +T55 Diagnostic_procedure 1022 1028 Biopsy +E23 Diagnostic_procedure:T55 +T56 Sign_symptom 1054 1059 tumor +E24 Sign_symptom:T56 +R32 MODIFY Arg1:E24 Arg2:E23 +T57 Disease_disorder 1101 1115 adenocarcinoma +E25 Disease_disorder:T57 +T58 Detailed_description 1079 1100 poorly differentiated +R33 MODIFY Arg1:T58 Arg2:E25 +T59 Diagnostic_procedure 1130 1146 nutrition status +E26 Diagnostic_procedure:T59 +T60 Lab_value 1171 1172 2 +R34 MODIFY Arg1:T60 Arg2:E26 +T61 Detailed_description 1186 1215 Nutrition Risk Screening 2002 +R35 MODIFY Arg1:T61 Arg2:E26 +T62 Coreference 1246 1265 obstructive symptom +E27 Coreference:T62 +R36 IDENTICAL Arg1:E27 Arg2:E21 +T63 Coreference 1280 1285 tumor +E28 Coreference:T63 +R37 IDENTICAL Arg1:E28 Arg2:E20 +T64 Therapeutic_procedure 1289 1306 debulking surgery +E29 Therapeutic_procedure:T64 +T65 Therapeutic_procedure 1317 1330 esophagectomy +E30 Therapeutic_procedure:T65 +T66 Therapeutic_procedure 1344 1355 gastrectomy +E31 Therapeutic_procedure:T66 +T67 Detailed_description 1310 1316 distal +R38 MODIFY Arg1:T67 Arg2:E30 +T68 Detailed_description 1335 1343 proximal +R39 MODIFY Arg1:T68 Arg2:E31 +R40 SUB_PROCEDURE Arg1:E30 Arg2:E29 +R41 SUB_PROCEDURE Arg1:E31 Arg2:E29 +T69 Therapeutic_procedure 1387 1398 anastomosis +E32 Therapeutic_procedure:T69 +T70 Biological_structure 1371 1386 Esophagogastric +R42 MODIFY Arg1:T70 Arg2:E32 +T71 Therapeutic_procedure 1403 1417 reconstruction +E33 Therapeutic_procedure:T71 +T72 Therapeutic_procedure 1442 1457 stapling device +E34 Therapeutic_procedure:T72 +R43 SUB_PROCEDURE Arg1:E34 Arg2:E33 +T73 Sign_symptom 1627 1634 ascites +E35 Sign_symptom:T73 +A1 POLARITY E35 NEG +T74 Sign_symptom 1638 1664 dissemination of the tumor +E36 Sign_symptom:T74 +A2 POLARITY E36 NEG +T75 Biological_structure 1685 1702 peritoneal cavity +R44 MODIFY Arg1:T75 Arg2:E36 +R45 MODIFY Arg1:T75 Arg2:E35 +T76 Sign_symptom 1481 1486 tumor +E37 Sign_symptom:T76 +T77 Biological_structure 1512 1537 esophago-gastric junction +R46 MODIFY Arg1:T77 Arg2:E37 +T78 Coreference 1546 1551 tumor +E38 Coreference:T78 +R47 IDENTICAL Arg1:E38 Arg2:E37 +T79 Sign_symptom 1552 1563 infiltrated +E39 Sign_symptom:T79 +T80 Sign_symptom 1596 1606 metastasis +E40 Sign_symptom:T80 +T81 Biological_structure 1610 1622 station four +#1 AnnotatorNotes T81 lower paratracheal lymph nodes +R48 MODIFY Arg1:T81 Arg2:E40 +T82 Biological_structure 1585 1595 lymph node +R49 MODIFY Arg1:T82 Arg2:E40 +T83 Biological_structure 1568 1579 whole layer +R50 MODIFY Arg1:T83 Arg2:E39 +R51 MODIFY Arg1:E38 Arg2:E39 +T84 Sign_symptom 1708 1713 tumor +E41 Sign_symptom:T84 +T85 Area 1723 1734 3 cm × 6 cm +R52 MODIFY Arg1:T85 Arg2:E41 +T86 Color 1748 1766 black pigmentation +R53 MODIFY Arg1:T86 Arg2:E41 +T87 Sign_symptom 1819 1826 nodules +E42 Sign_symptom:T87 +T88 Color 1799 1808 pigmented +T89 Detailed_description 1791 1798 several +T90 Detailed_description 1809 1818 satellite +R54 MODIFY Arg1:T90 Arg2:E42 +R55 MODIFY Arg1:T88 Arg2:E42 +R56 MODIFY Arg1:T89 Arg2:E42 +T91 Coreference 1838 1855 main tumor lesion +E43 Coreference:T91 +R57 IDENTICAL Arg1:E43 Arg2:E41 +T92 Coreference 1861 1872 largest one +E44 Coreference:T92 +R58 IDENTICAL Arg1:E44 Arg2:E42 +T93 Area 1879 1890 1 cm × 1 cm +R59 MODIFY Arg1:T93 Arg2:E44 +T94 Sign_symptom 1929 1936 lesions +E45 Sign_symptom:T94 +T95 Detailed_description 1918 1928 ulceration +R60 MODIFY Arg1:T95 Arg2:E45 +T96 Biological_structure 1955 1976 fundus of the stomach +R61 MODIFY Arg1:T96 Arg2:E45 +T97 Diagnostic_procedure 1978 1993 Microscopically +E46 Diagnostic_procedure:T97 +T98 Biological_structure 2007 2019 tumor tissue +R62 MODIFY Arg1:T98 Arg2:E46 +T99 Diagnostic_procedure 2143 2167 Pathological examination +E47 Diagnostic_procedure:T99 +T100 Diagnostic_procedure 2194 2199 stage +E48 Diagnostic_procedure:T100 +#2 AnnotatorNotes E48 cancer staging +T101 Lab_value 2203 2206 IVA +T102 Lab_value 2208 2215 T4aN1M0 +R63 MODIFY Arg1:T101 Arg2:E48 +R64 MODIFY Arg1:T102 Arg2:E48 +T103 Diagnostic_procedure 2066 2071 cells +E49 Diagnostic_procedure:T103 +T104 Lab_value 2054 2065 pleomorphic +T105 Lab_value 2036 2049 non-organized +T106 Diagnostic_procedure 2092 2098 nuclei +E50 Diagnostic_procedure:T106 +T107 Lab_value 2083 2091 atypical +T108 Diagnostic_procedure 2113 2129 melanin granules +E51 Diagnostic_procedure:T108 +T109 Lab_value 2104 2112 abundant +R65 MODIFY Arg1:T109 Arg2:E51 +R66 MODIFY Arg1:T107 Arg2:E50 +R67 MODIFY Arg1:T104 Arg2:E49 +R68 MODIFY Arg1:T105 Arg2:E49 +R69 SUB_PROCEDURE Arg1:E49 Arg2:E46 +R70 SUB_PROCEDURE Arg1:E50 Arg2:E49 +R71 SUB_PROCEDURE Arg1:E51 Arg2:E49 +T110 Diagnostic_procedure 2218 2246 Immunohistochemical staining +E52 Diagnostic_procedure:T110 +T111 Coreference 2263 2268 tumor +E53 Coreference:T111 +R72 IDENTICAL Arg1:E53 Arg2:T98 +T112 Diagnostic_procedure 2286 2291 S-100 +E54 Diagnostic_procedure:T112 +T113 Diagnostic_procedure 2293 2299 HMB-45 +E55 Diagnostic_procedure:T113 +T114 Diagnostic_procedure 2301 2309 mclean-A +E56 Diagnostic_procedure:T114 +T115 Diagnostic_procedure 2314 2322 Vimentin +E57 Diagnostic_procedure:T115 +T116 Diagnostic_procedure 2341 2354 cytokeratin 7 +E58 Diagnostic_procedure:T116 +T117 Diagnostic_procedure 2359 2373 cytokeratin 20 +E59 Diagnostic_procedure:T117 +T118 Lab_value 2273 2281 positive +T119 Lab_value 2328 2336 negative +R73 MODIFY Arg1:T118 Arg2:E54 +R74 MODIFY Arg1:T118 Arg2:E55 +R75 MODIFY Arg1:T118 Arg2:E56 +R76 MODIFY Arg1:T118 Arg2:E57 +R77 MODIFY Arg1:T119 Arg2:E58 +R78 MODIFY Arg1:T119 Arg2:E59 +R79 SUB_PROCEDURE Arg1:E54 Arg2:E52 +R80 SUB_PROCEDURE Arg1:E55 Arg2:E52 +R81 SUB_PROCEDURE Arg1:E56 Arg2:E52 +R82 SUB_PROCEDURE Arg1:E57 Arg2:E52 +R83 SUB_PROCEDURE Arg1:E58 Arg2:E52 +R84 SUB_PROCEDURE Arg1:E59 Arg2:E52 +T120 Disease_disorder 2460 2468 melanoma +E60 Disease_disorder:T120 +T121 Detailed_description 2443 2459 esophago-gastric +T122 Severity 2434 2442 advanced +T123 Detailed_description 2426 2433 primary +R85 MODIFY Arg1:T121 Arg2:E60 +R86 MODIFY Arg1:T122 Arg2:E60 +R87 MODIFY Arg1:T123 Arg2:E60 +T124 Therapeutic_procedure 2490 2510 postoperative course +E61 Therapeutic_procedure:T124 +T125 Lab_value 2515 2521 smooth +R88 MODIFY Arg1:T125 Arg2:E61 +T126 Sign_symptom 2534 2547 complications +E62 Sign_symptom:T126 +A3 POLARITY E62 NEG +T127 Sign_symptom 2571 2580 recovered +E63 Sign_symptom:T127 +T128 Clinical_event 2589 2599 discharged +E64 Clinical_event:T128 +T129 Date 2600 2610 14 d after +E65 Date:T129 +T130 Medication 2658 2674 adjuvant therapy +E66 Medication:T130 +A4 POLARITY E66 NEG +T131 Sign_symptom 2686 2696 recurrence +E67 Sign_symptom:T131 +T132 Biological_structure 2676 2685 abdominal +R89 MODIFY Arg1:T132 Arg2:E67 +T133 Sign_symptom 2709 2719 metastases +E68 Sign_symptom:T133 +T134 Biological_structure 2701 2708 hepatic +R90 MODIFY Arg1:T134 Arg2:E68 +T135 Date 2731 2747 within one month +E69 Date:T135 +T136 Clinical_event 2767 2776 follow-up +E70 Clinical_event:T136 +T137 Diagnostic_procedure 2777 2779 CT +E71 Diagnostic_procedure:T137 +T138 Therapeutic_procedure 2784 2809 other effective treatment +E72 Therapeutic_procedure:T138 +A5 POLARITY E72 NEG +T139 Outcome 2851 2855 died +E73 Outcome:T139 +T140 Disease_disorder 2867 2885 metastatic disease +E74 Disease_disorder:T140 +T141 Detailed_description 2859 2866 diffuse +R91 MODIFY Arg1:T141 Arg2:E74 +T142 Date 2886 2896 2 mo later +E75 Date:T142 +R92 AFTER Arg1:E1 Arg2:E2 +* OVERLAP E2 E3 +R93 BEFORE Arg1:E3 Arg2:E4 +* OVERLAP E4 E5 +R94 AFTER Arg1:E5 Arg2:E7 +* OVERLAP E7 E6 +R95 BEFORE Arg1:E6 Arg2:E8 +* OVERLAP E8 E9 E10 E11 E12 E13 E14 E16 E17 E18 E19 E20 E21 E22 +R96 BEFORE Arg1:E22 Arg2:E23 +* OVERLAP E23 E25 E26 E27 E28 +R97 BEFORE Arg1:E28 Arg2:E29 +* OVERLAP E29 E32 E33 E37 E38 E39 E40 E35 E36 E41 E42 E45 E46 E47 E48 E52 E60 +R98 BEFORE Arg1:E60 Arg2:E61 +* OVERLAP E61 E62 +R99 BEFORE Arg1:E62 Arg2:E63 +R100 BEFORE Arg1:E63 Arg2:E64 +* OVERLAP E64 E65 +R101 BEFORE Arg1:E65 Arg2:E66 +* OVERLAP E66 E67 E68 E69 E70 E71 +R102 BEFORE Arg1:E71 Arg2:E72 +R103 BEFORE Arg1:E72 Arg2:E73 +* OVERLAP E73 E74 E75