--- a +++ b/processing/MACCROBAT/26584481.ann @@ -0,0 +1,301 @@ +T1 Age 25 36 22-year-old +T2 Sex 37 42 woman +T3 History 51 91 diagnosed in childhood with type IIb VHL +T4 History 104 129 multiple retinal angiomas +T5 History 131 147 pancreatic cysts +T6 History 153 192 spinal and cerebellar hemangioblastomas +T7 Clinical_event 202 210 admitted +E1 Clinical_event:T7 +T8 Nonbiological_location 218 226 hospital +R1 MODIFY Arg1:T8 Arg2:E1 +T9 Sign_symptom 254 261 dyspnea +E2 Sign_symptom:T9 +T10 Sign_symptom 266 278 palpitations +E3 Sign_symptom:T10 +T11 Detailed_description 242 253 progressive +R2 MODIFY Arg1:T11 Arg2:E2 +T12 Diagnostic_procedure 300 314 blood pressure +E4 Diagnostic_procedure:T12 +T13 Diagnostic_procedure 283 294 examination +E5 Diagnostic_procedure:T13 +T14 Lab_value 319 332 159/119 mm Hg +R3 MODIFY Arg1:T14 Arg2:E4 +T15 Diagnostic_procedure 341 346 pulse +E6 Diagnostic_procedure:T15 +T16 Lab_value 351 358 123 bpm +R4 MODIFY Arg1:T16 Arg2:E6 +T17 Diagnostic_procedure 360 380 Physical examination +E7 Diagnostic_procedure:T17 +R5 SUB_PROCEDURE Arg1:E4 Arg2:E5 +R6 SUB_PROCEDURE Arg1:E6 Arg2:E5 +T18 Sign_symptom 401 407 murmur +E8 Sign_symptom:T18 +T19 Detailed_description 392 400 systolic +R7 MODIFY Arg1:T19 Arg2:E8 +T20 Biological_structure 415 427 mitral focus +T21 Biological_structure 433 458 irradiation to the axilla +R8 MODIFY Arg1:T20 Arg2:E8 +R9 MODIFY Arg1:T21 Arg2:E8 +T22 Sign_symptom 463 478 pulmonary rales +E9 Sign_symptom:T22 +T23 Diagnostic_procedure 480 499 Electrocardiography +E10 Diagnostic_procedure:T23 +T24 Lab_value 509 531 no remarkable findings +R10 MODIFY Arg1:T24 Arg2:E10 +T25 Sign_symptom 550 561 tachycardia +E11 Sign_symptom:T25 +T26 Detailed_description 544 549 sinus +R11 MODIFY Arg1:T26 Arg2:E11 +T27 Diagnostic_procedure 563 579 Laboratory tests +E12 Diagnostic_procedure:T27 +T28 Diagnostic_procedure 610 639 pro-brain natriuretic peptide +E13 Diagnostic_procedure:T28 +T29 Detailed_description 599 609 N-terminal +R12 MODIFY Arg1:T29 Arg2:E13 +T30 Lab_value 590 598 elevated +R13 MODIFY Arg1:T30 Arg2:E13 +T31 Diagnostic_procedure 650 655 X-ray +E14 Diagnostic_procedure:T31 +R14 SUB_PROCEDURE Arg1:E13 Arg2:E12 +T32 Biological_structure 644 649 chest +R15 MODIFY Arg1:T32 Arg2:E14 +T33 Sign_symptom 672 700 pulmonary interstitial edema +E15 Sign_symptom:T33 +T34 Clinical_event 718 726 admitted +E16 Clinical_event:T34 +T35 Biological_structure 734 758 Department of Cardiology +R16 MODIFY Arg1:T35 Arg2:E16 +T36 Disease_disorder 801 814 heart failure +E17 Disease_disorder:T36 +T37 Detailed_description 787 800 decompensated +T38 Detailed_description 781 786 acute +R17 MODIFY Arg1:T37 Arg2:E17 +R18 MODIFY Arg1:T38 Arg2:E17 +T39 Diagnostic_procedure 830 846 echocardiography +E18 Diagnostic_procedure:T39 +T40 Detailed_description 816 829 Transthoracic +R19 MODIFY Arg1:T40 Arg2:E18 +T41 Sign_symptom 856 863 dilated +E19 Sign_symptom:T41 +T42 Diagnostic_procedure 903 920 ejection fraction +E20 Diagnostic_procedure:T42 +T43 Lab_value 884 902 severely depressed +R20 MODIFY Arg1:T43 Arg2:E20 +T44 Sign_symptom 940 951 hypokinesia +E21 Sign_symptom:T44 +T45 Sign_symptom 963 983 mitral regurgitation +E22 Sign_symptom:T45 +T46 Severity 958 962 mild +R21 MODIFY Arg1:T46 Arg2:E22 +T47 Detailed_description 928 939 generalized +R22 MODIFY Arg1:T47 Arg2:E21 +T48 Sign_symptom 1059 1066 dyspnea +E23 Sign_symptom:T48 +T49 Detailed_description 1048 1058 paroxysmal +R23 MODIFY Arg1:T49 Arg2:E23 +T50 Detailed_description 1028 1044 several episodes +R24 MODIFY Arg1:T50 Arg2:E23 +T51 Medication 1090 1100 β-blockers +E24 Medication:T51 +T52 Medication 1105 1114 diuretics +E25 Medication:T52 +T53 Disease_disorder 1149 1170 adrenal gland disease +E26 Disease_disorder:T53 +A1 POLARITY E26 UNCERTAIN +T54 Diagnostic_procedure 1188 1201 catecholamine +E27 Diagnostic_procedure:T54 +T55 Diagnostic_procedure 1206 1223 metanephrine test +E28 Diagnostic_procedure:T55 +T56 Biological_structure 1180 1187 urinary +R25 MODIFY Arg1:T56 Arg2:E27 +T57 Detailed_description 1172 1179 24-hour +R26 MODIFY Arg1:T57 Arg2:E27 +R27 MODIFY Arg1:T57 Arg2:E28 +T58 Diagnostic_procedure 1249 1252 MRI +E29 Diagnostic_procedure:T58 +T59 Biological_structure 1241 1248 Cardiac +R28 MODIFY Arg1:T59 Arg2:E29 +T60 Diagnostic_procedure 1292 1312 cardiomyopathy study +E30 Diagnostic_procedure:T60 +R29 SUB_PROCEDURE Arg1:E29 Arg2:E30 +T61 Sign_symptom 1423 1427 mass +E31 Sign_symptom:T61 +T62 Biological_structure 1412 1422 left renal +R30 MODIFY Arg1:T62 Arg2:E31 +T63 Detailed_description 1406 1411 great +R31 MODIFY Arg1:T63 Arg2:E31 +R32 MODIFY Arg1:T56 Arg2:E28 +T64 Coreference 1447 1463 laboratory tests +E32 Coreference:T64 +R33 IDENTICAL Arg1:E32 Arg2:E28 +R34 IDENTICAL Arg1:E32 Arg2:E27 +T65 Diagnostic_procedure 1499 1513 norepinephrine +E33 Diagnostic_procedure:T65 +T66 Lab_value 1471 1488 markedly elevated +T67 Diagnostic_procedure 1515 1535 total catecholamines +E34 Diagnostic_procedure:T67 +T68 Diagnostic_procedure 1537 1552 normetanephrine +E35 Diagnostic_procedure:T68 +T69 Diagnostic_procedure 1557 1569 metanephrine +E36 Diagnostic_procedure:T69 +T70 Diagnostic_procedure 1582 1593 epinephrine +E37 Diagnostic_procedure:T70 +R35 MODIFY Arg1:T66 Arg2:E33 +R36 MODIFY Arg1:T66 Arg2:E34 +R37 MODIFY Arg1:T66 Arg2:E35 +R38 MODIFY Arg1:T66 Arg2:E36 +R39 MODIFY Arg1:T66 Arg2:E37 +T71 Lab_value 1625 1631 468 μg +T72 Coreference 1610 1624 norepinephrine +E38 Coreference:T72 +T73 Coreference 1664 1675 epinephrine +E39 Coreference:T73 +T74 Coreference 1712 1732 total catecholamines +E40 Coreference:T74 +T75 Coreference 1773 1788 normetanephrine +E41 Coreference:T75 +T76 Coreference 1831 1849 total metanephrine +E42 Coreference:T76 +R40 IDENTICAL Arg1:E38 Arg2:E33 +R41 IDENTICAL Arg1:E39 Arg2:E37 +R42 IDENTICAL Arg1:E40 Arg2:E34 +R43 IDENTICAL Arg1:E41 Arg2:E35 +R44 IDENTICAL Arg1:E42 Arg2:E36 +R45 MODIFY Arg1:T71 Arg2:E38 +T77 Lab_value 1676 1681 13 μg +R46 MODIFY Arg1:T77 Arg2:E39 +T78 Lab_value 1733 1739 658 μg +R47 MODIFY Arg1:T78 Arg2:E40 +T79 Lab_value 1789 1797 2,988 μg +R48 MODIFY Arg1:T79 Arg2:E41 +T80 Lab_value 1850 1858 3,013 μg +R49 MODIFY Arg1:T80 Arg2:E42 +T81 Diagnostic_procedure 1908 1911 MRI +E43 Diagnostic_procedure:T81 +T82 Biological_structure 1898 1907 abdominal +R50 MODIFY Arg1:T82 Arg2:E43 +T83 Sign_symptom 1967 1973 masses +E44 Sign_symptom:T83 +T84 Detailed_description 1960 1966 cystic +T85 Detailed_description 1956 1959 two +R51 MODIFY Arg1:T84 Arg2:E44 +R52 MODIFY Arg1:T85 Arg2:E44 +T86 Biological_structure 1997 2015 left hypochondrium +R53 MODIFY Arg1:T86 Arg2:E44 +T87 Therapeutic_procedure 2026 2035 resection +E45 Therapeutic_procedure:T87 +T88 Coreference 2039 2050 both masses +E46 Coreference:T88 +R54 IDENTICAL Arg1:E46 Arg2:E44 +T89 Detailed_description 2017 2025 Surgical +R55 MODIFY Arg1:T89 Arg2:E45 +T90 Therapeutic_procedure 2072 2082 α-blockade +E47 Therapeutic_procedure:T90 +T91 Therapeutic_procedure 2109 2119 β-blockade +E48 Therapeutic_procedure:T91 +T92 Medication 2088 2104 phenoxybenzamine +E49 Medication:T92 +T93 Medication 2125 2136 propranolol +E50 Medication:T93 +R56 SUB_PROCEDURE Arg1:E49 Arg2:E47 +R57 SUB_PROCEDURE Arg1:E50 Arg2:E48 +T94 Therapeutic_procedure 2148 2169 laparoscopic approach +E51 Therapeutic_procedure:T94 +R58 SUB_PROCEDURE Arg1:E51 Arg2:E45 +T95 Disease_disorder 2199 2215 pheochromocytoma +E52 Disease_disorder:T95 +T96 Diagnostic_procedure 2250 2259 histology +E53 Diagnostic_procedure:T96 +T97 Therapeutic_procedure 2231 2246 renal carcinoma +E54 Therapeutic_procedure:T97 +T98 Detailed_description 2220 2230 clear cell +R59 MODIFY Arg1:T98 Arg2:E54 +T99 Clinical_event 2268 2277 follow-up +E55 Clinical_event:T99 +T100 Diagnostic_procedure 2279 2293 blood pressure +E56 Diagnostic_procedure:T100 +T101 Diagnostic_procedure 2298 2308 heart rate +E57 Diagnostic_procedure:T101 +T102 Lab_value 2316 2326 normalized +R60 MODIFY Arg1:T102 Arg2:E56 +R61 MODIFY Arg1:T102 Arg2:E57 +T103 Lab_value 2328 2340 124/77 mm Hg +R62 MODIFY Arg1:T103 Arg2:E56 +T104 Lab_value 2342 2348 78 bpm +R63 MODIFY Arg1:T104 Arg2:E57 +T105 Diagnostic_procedure 2367 2380 catecholamine +E58 Diagnostic_procedure:T105 +T106 Biological_structure 2359 2366 urinary +T107 Detailed_description 2351 2358 24-hour +R64 MODIFY Arg1:T106 Arg2:E58 +R65 MODIFY Arg1:T107 Arg2:E58 +T108 Lab_value 2400 2412 normal range +R66 MODIFY Arg1:T108 Arg2:E58 +T109 Diagnostic_procedure 2414 2428 norepinephrine +E59 Diagnostic_procedure:T109 +T110 Lab_value 2429 2434 69 μg +R67 MODIFY Arg1:T110 Arg2:E59 +T111 Diagnostic_procedure 2441 2460 total catecholamine +E60 Diagnostic_procedure:T111 +T112 Lab_value 2461 2467 221 μg +R68 MODIFY Arg1:T112 Arg2:E60 +T113 Diagnostic_procedure 2474 2489 normetanephrine +E61 Diagnostic_procedure:T113 +T114 Lab_value 2490 2496 202 μg +R69 MODIFY Arg1:T114 Arg2:E61 +T115 Diagnostic_procedure 2506 2524 total metanephrine +E62 Diagnostic_procedure:T115 +T116 Lab_value 2525 2531 259 μg +R70 MODIFY Arg1:T116 Arg2:E62 +T117 Sign_symptom 2577 2589 palpitations +E63 Sign_symptom:T117 +A2 POLARITY E63 NEG +T118 Sign_symptom 2593 2600 dyspnea +E64 Sign_symptom:T118 +A3 POLARITY E64 NEG +R71 SUB_PROCEDURE Arg1:E59 Arg2:E58 +R72 SUB_PROCEDURE Arg1:E60 Arg2:E58 +R73 SUB_PROCEDURE Arg1:E61 Arg2:E58 +R74 SUB_PROCEDURE Arg1:E62 Arg2:E58 +T119 Date 2602 2618 Six months after +E65 Date:T119 +T120 Diagnostic_procedure 2639 2655 echocardiography +E66 Diagnostic_procedure:T120 +T121 Sign_symptom 2702 2718 normal diameters +E67 Sign_symptom:T121 +T122 Biological_structure 2682 2696 left ventricle +R75 MODIFY Arg1:T122 Arg2:E67 +T123 Biological_structure 864 878 left ventricle +R76 MODIFY Arg1:T123 Arg2:E19 +T124 Diagnostic_procedure 2733 2750 ejection fraction +E68 Diagnostic_procedure:T124 +T125 Lab_value 2723 2732 preserved +R77 MODIFY Arg1:T125 Arg2:E68 +T126 Diagnostic_procedure 2761 2777 Genetic analysis +E69 Diagnostic_procedure:T126 +T127 Sign_symptom 2789 2806 germline mutation +E70 Sign_symptom:T127 +T128 Detailed_description 2808 2823 exon 3 deletion +T129 Detailed_description 2832 2857 VHL tumor suppressor gene +T130 Detailed_description 2865 2890 short arm of chromosome 3 +R78 MODIFY Arg1:T130 Arg2:T129 +R79 MODIFY Arg1:T128 Arg2:T129 +R80 MODIFY Arg1:T129 Arg2:E70 +T131 Family_history 2911 2935 no family history of VHL +T132 Detailed_description 2968 2984 de novo mutation +R81 MODIFY Arg1:T132 Arg2:E70 +* OVERLAP E1 E2 E3 E5 E7 E8 E9 E10 E11 E12 E14 E15 +R82 BEFORE Arg1:E15 Arg2:E16 +* OVERLAP E16 E17 E18 E19 E20 E21 E22 E23 E24 E25 E26 +R83 BEFORE Arg1:E26 Arg2:E27 +#1 AnnotatorNotes T57 Not a duration per se as it describes a diagnostic test +* OVERLAP E28 E30 E31 E32 E33 E34 E35 E36 E37 E38 E39 E40 E41 E42 E43 E44 +R84 BEFORE Arg1:E44 Arg2:E45 +R85 AFTER Arg1:E45 Arg2:E47 +* OVERLAP E47 E48 +R86 BEFORE Arg1:E48 Arg2:E51 +* OVERLAP E51 E52 E54 E53 +R87 BEFORE Arg1:E53 Arg2:E55 +* OVERLAP E55 E56 E57 E58 E63 E64 +R88 BEFORE Arg1:E64 Arg2:E65 +* OVERLAP E65 E66 E67 E68 E69 E70