--- a +++ b/processing/MACCROBAT/26175648.ann @@ -0,0 +1,423 @@ +T1 Date 3 13 March 2009 +E1 Date:T1 +T2 Age 17 28 21-year-old +T3 Sex 29 32 man +T4 Activity 37 45 admitted +E2 Activity:T4 +T5 Nonbiological_location 49 68 another institution +R1 MODIFY Arg1:T5 Arg2:E2 +T6 Sign_symptom 99 104 fever +E3 Sign_symptom:T6 +T7 Frequency 86 98 intermittent +R2 MODIFY Arg1:T7 Arg2:E3 +T8 Sign_symptom 106 114 headache +E4 Sign_symptom:T8 +T9 Sign_symptom 116 131 polyarthralgias +E5 Sign_symptom:T9 +T10 Sign_symptom 138 142 rash +E6 Sign_symptom:T10 +T11 Biological_structure 133 137 skin +T12 Biological_structure 152 157 trunk +R3 MODIFY Arg1:T12 Arg2:E6 +R4 MODIFY Arg1:T11 Arg2:E6 +T13 Sign_symptom 163 172 petechiae +E7 Sign_symptom:T13 +T14 Sign_symptom 226 233 healthy +E8 Sign_symptom:T14 +T15 History 215 233 previously healthy +T16 History 239 263 no history of drug abuse +T17 History 274 295 no regular medication +T18 History 309 316 no pets +T19 History 321 346 had not traveled recently +T20 Sign_symptom 446 451 fever +E9 Sign_symptom:T20 +T21 Severity 441 445 high +R5 MODIFY Arg1:T21 Arg2:E9 +T22 Diagnostic_procedure 463 491 maximum axillary temperature +E10 Diagnostic_procedure:T22 +T23 Quantitative_concept 493 499 >39 °C +R6 MODIFY Arg1:T23 Arg2:E10 +T24 Biological_structure 180 187 fingers +T25 Biological_structure 192 197 palms +R7 MODIFY Arg1:T24 Arg2:E7 +R8 MODIFY Arg1:T25 Arg2:E7 +T26 Sign_symptom 527 536 headaches +E11 Sign_symptom:T26 +T27 Date 395 411 one month before +E12 Date:T27 +T28 Activity 412 421 admission +E13 Activity:T28 +T29 Sign_symptom 562 572 arthralgia +E14 Sign_symptom:T29 +T30 Detailed_description 552 561 symmetric +T31 Detailed_description 538 547 bilateral +T32 Biological_structure 580 586 wrists +T33 Biological_structure 591 596 hands +R9 MODIFY Arg1:T32 Arg2:E14 +R10 MODIFY Arg1:T33 Arg2:E14 +R11 MODIFY Arg1:T30 Arg2:E14 +R12 MODIFY Arg1:T31 Arg2:E14 +T34 Date 3349 3365 Ten months after +E15 Date:T34 +T35 Activity 3389 3398 presented +E16 Activity:T35 +T36 Nonbiological_location 3406 3417 institution +R13 MODIFY Arg1:T36 Arg2:E16 +T37 Activity 3424 3439 follow-up visit +E17 Activity:T37 +T38 Activity 3106 3116 discharged +E18 Activity:T38 +T39 Nonbiological_location 3126 3134 hospital +R14 MODIFY Arg1:T39 Arg2:E18 +T40 Medication 3151 3161 prednisone +E19 Medication:T40 +T41 Sign_symptom 753 757 rash +E20 Sign_symptom:T41 +T42 Detailed_description 726 736 evanescent +T43 Color 738 752 salmon-colored +R15 MODIFY Arg1:T43 Arg2:E20 +R16 MODIFY Arg1:T42 Arg2:E20 +T44 Detailed_description 606 626 inflammatory pattern +R17 MODIFY Arg1:T44 Arg2:E14 +T45 Sign_symptom 629 638 petechiae +E21 Sign_symptom:T45 +T46 Biological_structure 648 653 palms +R18 MODIFY Arg1:T46 Arg2:E21 +T47 Biological_structure 658 665 fingers +R19 MODIFY Arg1:T47 Arg2:E21 +T48 Sign_symptom 682 686 rash +E22 Sign_symptom:T48 +T49 Color 667 681 salmon-colored +R20 MODIFY Arg1:T49 Arg2:E22 +T50 Biological_structure 694 699 trunk +R21 MODIFY Arg1:T50 Arg2:E22 +T51 Sign_symptom 701 707 nausea +E23 Sign_symptom:T51 +T52 Sign_symptom 713 721 vomiting +E24 Sign_symptom:T52 +T53 Biological_structure 778 783 chest +T54 Biological_structure 788 795 abdomen +R22 MODIFY Arg1:T53 Arg2:E20 +R23 MODIFY Arg1:T54 Arg2:E20 +T55 Distance 801 805 2-mm +T56 Sign_symptom 806 815 petechiae +E25 Sign_symptom:T56 +R24 MODIFY Arg1:T55 Arg2:E25 +T57 Biological_structure 828 833 palms +T58 Biological_structure 842 849 fingers +R25 MODIFY Arg1:T57 Arg2:E25 +R26 MODIFY Arg1:T58 Arg2:E25 +T59 Disease_disorder 870 879 arthritis +E26 Disease_disorder:T59 +A1 POLARITY E26 NEG +T60 Sign_symptom 898 913 lymphadenopathy +E27 Sign_symptom:T60 +A2 POLARITY E27 NEG +T61 Sign_symptom 917 935 hepatosplenomegaly +E28 Sign_symptom:T61 +A3 POLARITY E28 NEG +T62 Diagnostic_procedure 937 950 Blood testing +E29 Diagnostic_procedure:T62 +T63 Diagnostic_procedure 967 987 inflammatory markers +E30 Diagnostic_procedure:T63 +T64 Qualitative_concept 958 966 elevated +R27 MODIFY Arg1:T64 Arg2:E30 +R28 SUB_PROCEDURE Arg1:E30 Arg2:E29 +T65 Diagnostic_procedure 1004 1024 electrocardiographic +E31 Diagnostic_procedure:T65 +T66 Diagnostic_procedure 1026 1029 ECG +E32 Diagnostic_procedure:T66 +R29 IDENTICAL Arg1:E32 Arg2:E31 +T67 Biological_structure 1035 1040 chest +T68 Diagnostic_procedure 1041 1053 radiographic +E33 Diagnostic_procedure:T68 +R30 MODIFY Arg1:T67 Arg2:E33 +T70 Medication 1075 1084 Ibuprofen +E34 Medication:T70 +T71 Dosage 1086 1096 1,200 mg/d +T72 Medication 1102 1115 acetaminophen +E35 Medication:T72 +T73 Sign_symptom 1152 1163 symptomatic +E36 Sign_symptom:T73 +A4 POLARITY E36 MAYBE_NEG +T74 Diagnostic_procedure 1185 1195 evaluation +E37 Diagnostic_procedure:T74 +T75 Diagnostic_procedure 1221 1235 blood cultures +E38 Diagnostic_procedure:T75 +T76 Diagnostic_procedure 1257 1274 serologic studies +E39 Diagnostic_procedure:T76 +T77 Detailed_description 1237 1256 viral and bacterial +R33 MODIFY Arg1:T77 Arg2:E39 +T78 Diagnostic_procedure 1276 1297 immunologic screening +E40 Diagnostic_procedure:T78 +T79 Diagnostic_procedure 1299 1316 rheumatoid factor +E41 Diagnostic_procedure:T79 +T80 Diagnostic_procedure 1321 1343 antinuclear antibodies +E42 Diagnostic_procedure:T80 +T81 Diagnostic_procedure 1350 1370 computed tomographic +E43 Diagnostic_procedure:T81 +T82 Diagnostic_procedure 1372 1374 CT +E44 Diagnostic_procedure:T82 +R34 IDENTICAL Arg1:E44 Arg2:E43 +T83 Biological_structure 1391 1396 chest +T84 Biological_structure 1398 1405 abdomen +T85 Biological_structure 1407 1413 pelvis +T86 Biological_structure 1419 1426 cranium +R35 MODIFY Arg1:T83 Arg2:E43 +R36 MODIFY Arg1:T84 Arg2:E43 +R37 MODIFY Arg1:T85 Arg2:E43 +R38 MODIFY Arg1:T86 Arg2:E43 +T87 Diagnostic_procedure 1474 1502 transthoracic echocardiogram +E45 Diagnostic_procedure:T87 +T88 Diagnostic_procedure 1504 1507 TTE +E46 Diagnostic_procedure:T88 +R39 IDENTICAL Arg1:E46 Arg2:E45 +T89 Sign_symptom 1538 1558 pericardial effusion +E47 Sign_symptom:T89 +T90 Severity 1533 1537 mild +R40 MODIFY Arg1:T90 Arg2:E47 +T91 Detailed_description 1516 1531 circumferential +R41 MODIFY Arg1:T91 Arg2:E47 +T92 Sign_symptom 1602 1611 tamponade +E48 Sign_symptom:T92 +A5 POLARITY E48 NEG +T93 Diagnostic_procedure 1560 1576 maximal diameter +E49 Diagnostic_procedure:T93 +T94 Lab_value 1578 1582 8 mm +E50 Lab_value:T94 +R42 MODIFY Arg1:E50 Arg2:E49 +T95 Sign_symptom 1684 1688 pain +E51 Sign_symptom:T95 +T96 Sign_symptom 1658 1665 dyspnea +E52 Sign_symptom:T96 +T97 Biological_structure 1678 1683 chest +R43 MODIFY Arg1:T97 Arg2:E51 +T98 Detailed_description 1670 1677 diffuse +R44 MODIFY Arg1:T98 Arg2:E51 +T99 Date 1640 1656 A few days later +E53 Date:T99 +T100 Sign_symptom 1704 1708 pain +E54 Sign_symptom:T100 +A6 POLARITY E54 NEG +T101 Activity 1731 1742 anteflexion +E55 Activity:T101 +T102 Biological_structure 1725 1730 chest +R45 MODIFY Arg1:T102 Arg2:E55 +T103 Activity 1766 1777 inspiration +E56 Activity:T103 +T104 Detailed_description 1761 1765 deep +R46 MODIFY Arg1:T104 Arg2:E56 +T105 Activity 1785 1797 lying supine +E57 Activity:T105 +T106 Sign_symptom 1815 1826 hypotensive +E58 Sign_symptom:T106 +T107 Sign_symptom 1828 1839 tachycardic +E59 Sign_symptom:T107 +T108 Sign_symptom 1845 1855 hyperpneic +E60 Sign_symptom:T108 +T109 Sign_symptom 1890 1900 distention +E61 Sign_symptom:T109 +T110 Biological_structure 1875 1889 jugular venous +R47 MODIFY Arg1:T110 Arg2:E61 +T111 Diagnostic_procedure 1906 1909 ECG +E62 Diagnostic_procedure:T111 +T112 Sign_symptom 1947 1967 ST-segment elevation +E63 Sign_symptom:T112 +T113 Sign_symptom 1923 1934 tachycardia +E64 Sign_symptom:T113 +T114 Detailed_description 1917 1922 sinus +R48 MODIFY Arg1:T114 Arg2:E64 +T115 Detailed_description 1939 1946 diffuse +R49 MODIFY Arg1:T115 Arg2:E63 +T116 Diagnostic_procedure 1987 1997 radiograph +E65 Diagnostic_procedure:T116 +T117 Biological_structure 1981 1986 chest +R50 MODIFY Arg1:T117 Arg2:E65 +T118 Sign_symptom 2010 2018 enlarged +E66 Sign_symptom:T118 +T119 Biological_structure 2019 2026 cardiac +R51 MODIFY Arg1:T119 Arg2:E66 +T120 Diagnostic_procedure 2055 2075 inflammatory markers +E67 Diagnostic_procedure:T120 +T121 Lab_value 2087 2095 elevated +E68 Lab_value:T121 +R52 MODIFY Arg1:E68 Arg2:E67 +T122 Diagnostic_procedure 2117 2120 TTE +E69 Diagnostic_procedure:T122 +T123 Sign_symptom 2147 2167 pericardial effusion +E70 Sign_symptom:T123 +A7 TREND E70 INC +T124 Distance 2187 2192 12 mm +R53 MODIFY Arg1:T124 Arg2:E70 +T125 Sign_symptom 2206 2214 collapse +E71 Sign_symptom:T125 +T126 Biological_structure 2222 2242 right heart chambers +R54 MODIFY Arg1:T126 Arg2:E71 +T127 Therapeutic_procedure 2254 2272 pericardiocentesis +E72 Therapeutic_procedure:T127 +T128 Detailed_description 2244 2253 Emergency +R55 MODIFY Arg1:T128 Arg2:E72 +T129 Sign_symptom 2290 2311 serosanguineous fluid +E73 Sign_symptom:T129 +T130 Volume 2281 2286 60 mL +R56 MODIFY Arg1:T130 Arg2:E73 +T131 Diagnostic_procedure 2328 2330 CT +E74 Diagnostic_procedure:T131 +T132 Biological_structure 2338 2343 chest +T133 Biological_structure 2348 2355 abdomen +T134 Sign_symptom 2392 2408 pleural effusion +E75 Sign_symptom:T134 +T135 Sign_symptom 2426 2433 ascites +E76 Sign_symptom:T135 +T136 Severity 2421 2425 mild +R57 MODIFY Arg1:T136 Arg2:E76 +T137 Severity 2365 2369 mild +T138 Detailed_description 2370 2375 right +T139 Severity 2380 2386 severe +T140 Detailed_description 2387 2391 left +R58 MODIFY Arg1:T140 Arg2:E75 +R59 MODIFY Arg1:T138 Arg2:E75 +R60 MODIFY Arg1:T139 Arg2:T140 +R61 MODIFY Arg1:T137 Arg2:T138 +T141 Therapeutic_procedure 2435 2450 Thoracocentesis +E77 Therapeutic_procedure:T141 +T142 Sign_symptom 2494 2523 serosanguineous pleural fluid +E78 Sign_symptom:T142 +T143 Volume 2484 2490 350 mL +R62 MODIFY Arg1:T143 Arg2:E78 +T144 Diagnostic_procedure 2600 2625 microbiologic examination +E79 Diagnostic_procedure:T144 +T145 Lab_value 2591 2599 negative +E80 Lab_value:T145 +R63 MODIFY Arg1:E80 Arg2:E79 +T146 Diagnostic_procedure 2653 2672 histologic analysis +E81 Diagnostic_procedure:T146 +T147 Lab_value 2635 2647 unremarkable +E82 Lab_value:T147 +R64 MODIFY Arg1:E82 Arg2:E81 +T148 Detailed_description 2557 2563 fluids +T149 Biological_structure 2552 2556 lung +T150 Biological_structure 2542 2547 heart +R65 MODIFY Arg1:T149 Arg2:T148 +R66 MODIFY Arg1:T150 Arg2:T148 +R67 MODIFY Arg1:T148 Arg2:E79 +R68 MODIFY Arg1:T148 Arg2:E81 +T151 Disease_disorder 2691 2695 AOSD +E83 Disease_disorder:T151 +#1 AnnotatorNotes E83 Adult-onset Still's disease +T152 Detailed_description 428 440 intermittent +R69 MODIFY Arg1:T152 Arg2:E9 +T153 Medication 2733 2742 medicated +E84 Medication:T153 +T154 Medication 2748 2758 prednisone +E85 Medication:T154 +T155 Dosage 2760 2771 0.5 mg/kg/d +R70 MODIFY Arg1:T155 Arg2:E85 +T156 Sign_symptom 2809 2820 improvement +E86 Sign_symptom:T156 +T157 Sign_symptom 2848 2872 ST-segment normalization +E87 Sign_symptom:T157 +T158 Diagnostic_procedure 2892 2906 echocardiogram +E88 Diagnostic_procedure:T158 +T159 Severity 2919 2923 mild +T160 Sign_symptom 2924 2944 pericardial effusion +E89 Sign_symptom:T160 +R71 MODIFY Arg1:T159 Arg2:E89 +T161 Distance 2946 2952 2–3 mm +R72 MODIFY Arg1:T161 Arg2:E89 +T162 Disease_disorder 2963 2985 hemodynamic compromise +E90 Disease_disorder:T162 +A8 POLARITY E90 NEG +T163 Diagnostic_procedure 2987 2996 Screening +E91 Diagnostic_procedure:T163 +T164 Disease_disorder 3027 3036 disorders +E92 Disease_disorder:T164 +A9 POLARITY E92 NEG +T165 Detailed_description 3016 3026 infectious +T166 Detailed_description 3001 3011 autoimmune +R73 MODIFY Arg1:T165 Arg2:E92 +R74 MODIFY Arg1:T166 Arg2:E92 +T167 Sign_symptom 3213 3221 effusion +E93 Sign_symptom:T167 +T168 Detailed_description 3205 3212 pleural +T169 Detailed_description 3189 3200 pericardial +R75 MODIFY Arg1:T168 Arg2:E93 +R76 MODIFY Arg1:T169 Arg2:E93 +T170 Date 3222 3236 2 months after +E94 Date:T170 +T171 Clinical_event 3237 3246 discharge +E95 Clinical_event:T171 +T172 Medication 3254 3268 corticosteroid +E96 Medication:T172 +A10 POLARITY E96 NEG +T173 Medication 3329 3339 prednisone +E97 Medication:T173 +T174 Outcome 3448 3460 asymptomatic +E98 Outcome:T174 +T175 Medication 3483 3497 corticosteroid +E99 Medication:T175 +T176 Diagnostic_procedure 3517 3520 ECG +E100 Diagnostic_procedure:T176 +T177 Diagnostic_procedure 3525 3528 TTE +E101 Diagnostic_procedure:T177 +T178 Lab_value 3536 3558 no significant changes +E102 Lab_value:T178 +T179 Lab_value 3055 3077 no significant changes +E103 Lab_value:T179 +R77 MODIFY Arg1:E103 Arg2:E91 +R78 MODIFY Arg1:E102 Arg2:E101 +R79 MODIFY Arg1:E102 Arg2:E100 +* OVERLAP E1 E2 E3 E4 E5 E6 E7 +R80 AFTER Arg1:E7 Arg2:E8 +R81 BEFORE Arg1:E8 Arg2:E12 +R82 BEFORE Arg1:E12 Arg2:E13 +R83 AFTER Arg1:E13 Arg2:E9 +* OVERLAP E9 E10 E11 E14 E21 E22 E23 E24 E20 E25 E26 E27 E28 +R84 BEFORE Arg1:E28 Arg2:E29 +* OVERLAP E29 E31 E33 +T69 Lab_value 1067 1073 normal +E104 Lab_value:T69 +R31 MODIFY Arg1:E104 Arg2:E33 +R32 MODIFY Arg1:E104 Arg2:E31 +R85 BEFORE Arg1:E33 Arg2:E34 +R86 MODIFY Arg1:T71 Arg2:E34 +T180 Dosage 1117 1126 as needed +R87 MODIFY Arg1:T180 Arg2:E35 +* OVERLAP E34 E35 +R88 BEFORE Arg1:E35 Arg2:E36 +* OVERLAP E36 E37 E38 E39 E40 E43 E45 E47 E49 E48 +R89 SUB_PROCEDURE Arg1:E41 Arg2:E40 +R90 SUB_PROCEDURE Arg1:E42 Arg2:E40 +T181 Lab_value 1428 1450 No significant changes +E105 Lab_value:T181 +R91 MODIFY Arg1:E105 Arg2:E37 +R92 BEFORE Arg1:E48 Arg2:E53 +* OVERLAP E53 E52 E51 +R93 BEFORE Arg1:E51 Arg2:E54 +* OVERLAP E54 E55 E106 E56 E57 E58 E59 E60 E61 E62 E64 E63 E65 E66 E67 E69 E70 E71 +T182 Therapeutic_procedure 1731 1742 anteflexion +E106 Therapeutic_procedure:T182 +R94 BEFORE Arg1:E71 Arg2:E72 +* OVERLAP E72 E73 E74 E75 E76 +R95 MODIFY Arg1:T132 Arg2:E74 +R96 MODIFY Arg1:T133 Arg2:E74 +R97 BEFORE Arg1:E76 Arg2:E77 +* OVERLAP E77 E78 E79 E81 +R98 BEFORE Arg1:E81 Arg2:E83 +* OVERLAP E83 E84 +R99 SUB_PROCEDURE Arg1:E85 Arg2:E84 +R100 BEFORE Arg1:E84 Arg2:E86 +T183 Detailed_description 2798 2808 laboratory +T184 Detailed_description 2785 2793 clinical +R101 MODIFY Arg1:T184 Arg2:E86 +R102 MODIFY Arg1:T183 Arg2:E86 +* OVERLAP E86 E87 E88 E89 E90 E91 E92 +R103 BEFORE Arg1:E92 Arg2:E18 +* OVERLAP E18 E19 +R104 BEFORE Arg1:E19 Arg2:E93 +* OVERLAP E93 E94 +R105 AFTER Arg1:E94 Arg2:E95 +* OVERLAP E95 E96 +R106 BEFORE Arg1:E96 Arg2:E97 +R107 BEFORE Arg1:E97 Arg2:E15 +* OVERLAP E15 E16 E17 E98 E99 E100 E101