--- a +++ b/processing/MACCROBAT/25210224.ann @@ -0,0 +1,378 @@ +T1 Age 2 12 7-year-old +T2 Sex 13 16 boy +T3 Disease_disorder 22 40 Goldenhar syndrome +E1 Disease_disorder:T3 +T4 Nonbiological_location 95 118 Department of Radiology +T5 Clinical_event 79 87 referred +E2 Clinical_event:T5 +T6 Diagnostic_procedure 123 136 imaging study +E3 Diagnostic_procedure:T6 +T7 Biological_structure 144 157 temporal bone +T8 Diagnostic_procedure 183 193 3D-CT scan +E4 Diagnostic_procedure:T8 +T9 Nonbiological_location 221 272 Philips Medical Systems, Amsterdam, The Netherlands +T10 Diagnostic_procedure 195 219 Brilliance CT-64-channel +E5 Diagnostic_procedure:T10 +R1 MODIFY Arg1:T9 Arg2:E5 +T11 Lab_value 311 317 120 kV +T12 Lab_value 335 341 150 mA +T13 Diagnostic_procedure 343 358 Slice thickness +E6 Diagnostic_procedure:T13 +T14 Distance 377 381 1-mm +T15 Distance 389 395 0.5-mm +T16 Diagnostic_procedure 396 405 increment +E7 Diagnostic_procedure:T16 +T17 Coreference 362 372 the images +E8 Coreference:T17 +R2 MODIFY Arg1:T14 Arg2:E6 +R3 MODIFY Arg1:T15 Arg2:E7 +T18 Detailed_description 417 429 DICOM format +T19 Diagnostic_procedure 407 413 Images +E9 Diagnostic_procedure:T19 +R4 MODIFY Arg1:T18 Arg2:E9 +T20 Diagnostic_procedure 492 524 three-dimensional reconstruction +E10 Diagnostic_procedure:T20 +T21 Biological_structure 528 547 skeletal structures +R5 MODIFY Arg1:T21 Arg2:E10 +R6 SUB_PROCEDURE Arg1:E10 Arg2:E9 +T22 Biological_structure 625 632 auricle +T23 Disease_disorder 607 617 hypoplasia +E11 Disease_disorder:T23 +R7 MODIFY Arg1:T22 Arg2:E11 +T24 Biological_structure 700 712 left auricle +T25 Diagnostic_procedure 725 735 dimensions +E12 Diagnostic_procedure:T25 +T26 Diagnostic_procedure 740 750 morphology +E13 Diagnostic_procedure:T26 +R8 MODIFY Arg1:T24 Arg2:E12 +R9 MODIFY Arg1:T24 Arg2:E13 +T27 Lab_value 717 724 regular +R10 MODIFY Arg1:T27 Arg2:E12 +R11 MODIFY Arg1:T27 Arg2:E13 +T28 Disease_disorder 752 759 Atresia +E14 Disease_disorder:T28 +T29 Biological_structure 767 789 right auditory conduit +T30 Biological_structure 803 824 left auditory conduit +T31 Lab_value 796 802 normal +R12 MODIFY Arg1:T31 Arg2:T30 +R13 MODIFY Arg1:E14 Arg2:T29 +T32 Biological_structure 2154 2173 right mastoid cells +T33 Biological_structure 1215 1231 mandibular plane +T34 Biological_structure 1196 1210 occlusal plane +T35 Diagnostic_procedure 1070 1086 Skeletal studies +E15 Diagnostic_procedure:T35 +T36 Biological_structure 892 899 cranium +T37 Biological_structure 1018 1030 inferior lip +T38 Biological_structure 1101 1119 mandibular condyle +T39 Biological_structure 1101 1111;1121 1126 mandibular ramus +T40 Biological_structure 1101 1111;1131 1137 mandibular corpus +T41 Biological_structure 1314 1333 Mandibular condyles +T42 Biological_structure 1338 1363 temporo-mandibular joints +T43 Detailed_description 1377 1387 asymmetric +R14 MODIFY Arg1:T43 Arg2:T42 +R15 MODIFY Arg1:T43 Arg2:T41 +T44 Biological_structure 1411 1424 right condyle +T45 Biological_attribute 1429 1437 deformed +R16 MODIFY Arg1:T45 Arg2:T44 +T46 Lab_value 1439 1446;1457 1476 shorter than the other side +T47 Lab_value 1451 1476 wider than the other side +T48 Area 1513 1522 11 × 7 mm +T49 Area 1533 1542 14 × 7 mm +T50 Detailed_description 1523 1528 right +T51 Detailed_description 1543 1547 left +T52 Biological_structure 1478 1496 mandibular condyle +R17 MODIFY Arg1:T50 Arg2:T48 +R18 MODIFY Arg1:T51 Arg2:T49 +R19 MODIFY Arg1:T48 Arg2:E40 +R20 MODIFY Arg1:T49 Arg2:E40 +R22 MODIFY Arg1:T46 Arg2:T44 +R21 MODIFY Arg1:T47 Arg2:T44 +T53 Biological_structure 1942 1955 temporal bone +T54 Biological_structure 1590 1605 skeleton planes +T55 Biological_structure 1749 1760 medial axis +T56 Biological_structure 1816 1841 right mandibular condyles +T57 Biological_structure 1984 2007 external auditory canal +T58 Disease_disorder 2008 2015 atresia +E16 Disease_disorder:T58 +T59 Detailed_description 1970 1980 right side +R23 MODIFY Arg1:T59 Arg2:T53 +R24 MODIFY Arg1:T57 Arg2:E16 +T60 Biological_structure 2031 2046 tympanic cavity +T61 Disease_disorder 2017 2027 hypoplasia +E17 Disease_disorder:T61 +R25 MODIFY Arg1:T60 Arg2:E17 +T62 Biological_structure 2247 2267 left tympanic cavity +T63 Biological_structure 2175 2203 Left external auditory canal +T64 Diagnostic_procedure 2204 2214 dimensions +E18 Diagnostic_procedure:T64 +T65 Diagnostic_procedure 2219 2229 morphology +E19 Diagnostic_procedure:T65 +T66 Lab_value 2235 2241 normal +R26 MODIFY Arg1:T66 Arg2:E19 +R27 MODIFY Arg1:T66 Arg2:E18 +R28 MODIFY Arg1:T63 Arg2:E18 +R29 MODIFY Arg1:T63 Arg2:E19 +T67 Disease_disorder 2124 2138 pneumatization +E20 Disease_disorder:T67 +A1 POLARITY E20 NEG +T68 Biological_structure 2362 2371 left ears +T69 Biological_structure 2352 2357;2367 2371 right ears +T70 Disease_disorder 2388 2398 hypoplasia +E21 Disease_disorder:T70 +T71 Severity 2382 2387 minor +R30 MODIFY Arg1:T71 Arg2:E21 +T72 Biological_structure 2402 2415 auricle bones +T73 Detailed_description 2423 2433 right side +R31 MODIFY Arg1:T73 Arg2:T72 +R32 MODIFY Arg1:T72 Arg2:E21 +T74 Biological_structure 2516 2528 malleus head +T75 Biological_structure 2591 2596 incus +T76 Detailed_description 2582 2590 deformed +T77 Biological_structure 2653 2665 left malleus +T78 Biological_structure 2670 2675 incus +T79 Biological_structure 2772 2779 staples +T80 Biological_structure 2640 2647 staples +T81 Detailed_description 2618 2635 impossible to see +R33 MODIFY Arg1:T81 Arg2:T80 +T82 Diagnostic_procedure 2844 2854 Dimensions +E22 Diagnostic_procedure:T82 +T83 Diagnostic_procedure 2859 2869 morphology +E23 Diagnostic_procedure:T83 +T84 Biological_structure 2873 2900 cochlea semicircular canals +T85 Biological_structure 2873 2880;2902 2912 cochlea vestibulum +T86 Biological_structure 2873 2880;2917 2926 cochlea utriculum +T87 Biological_structure 3045 3053 condyles +T88 Diagnostic_procedure 2978 2993 3D-CT valuation +E24 Diagnostic_procedure:T88 +T89 Detailed_description 3028 3037 asymmetry +R34 MODIFY Arg1:T89 Arg2:T87 +T90 Biological_structure 3074 3087 right condyle +T91 Detailed_description 3092 3102 dysmorphic +R35 MODIFY Arg1:T91 Arg2:T90 +T92 Other_event 872 884 ossification +E25 Other_event:T92 +#1 AnnotatorNotes E25 Biological (bone formation) process; should there be a separate category for recuperative processes and conditions? +T93 Severity 864 871 partial +R36 MODIFY Arg1:T93 Arg2:E25 +R37 MODIFY Arg1:T36 Arg2:E25 +T94 Detailed_description 900 925 typical in paediatric age +R38 MODIFY Arg1:T94 Arg2:E25 +T96 Diagnostic_procedure 977 991 convex profile +E27 Diagnostic_procedure:T96 +T97 Severity 972 976 very +R39 MODIFY Arg1:T97 Arg2:E27 +T95 Detailed_description 955 971 typical II class +R40 MODIFY Arg1:T95 Arg2:E27 +T98 Lab_value 1037 1044 reduced +T100 Detailed_description 997 1010 interposition +R42 MODIFY Arg1:T100 Arg2:T37 +T101 Biological_structure 3124 3131 auricle +T102 Biological_structure 3139 3157 right external ear +T103 Disease_disorder 3162 3173 hypoplastic +E28 Disease_disorder:T103 +T104 Biological_structure 3216 3232 right middle ear +T105 Biological_structure 3251 3266 tympanic cavity +T106 Disease_disorder 3239 3250 hypoplastic +E29 Disease_disorder:T106 +R43 MODIFY Arg1:E29 Arg2:T105 +T107 Biological_structure 3272 3290 right internal ear +T108 Disease_disorder 3298 3305 atresic +E30 Disease_disorder:T108 +T109 Biological_structure 3306 3322 auditory conduit +R44 MODIFY Arg1:E30 Arg2:T109 +R45 MODIFY Arg1:T104 Arg2:T105 +R46 MODIFY Arg1:T107 Arg2:T109 +T110 Diagnostic_procedure 46 74 post-natal genetic diagnosis +E31 Diagnostic_procedure:T110 +R47 SUB_PROCEDURE Arg1:E5 Arg2:E4 +T111 Coreference 292 300 protocol +E32 Coreference:T111 +R48 IDENTICAL Arg1:E32 Arg2:E5 +R49 MODIFY Arg1:T11 Arg2:E32 +R50 MODIFY Arg1:T12 Arg2:E32 +R51 SUB_PROCEDURE Arg1:E7 Arg2:E8 +R52 SUB_PROCEDURE Arg1:E6 Arg2:E8 +R53 IDENTICAL Arg1:E8 Arg2:E4 +T112 Detailed_description 435 478 processed on a PC using commercial software +R54 MODIFY Arg1:T112 Arg2:E9 +T113 History 22 40 Goldenhar syndrome +T114 History 46 74 post-natal genetic diagnosis +R55 MODIFY Arg1:T7 Arg2:E3 +R56 SUB_PROCEDURE Arg1:E4 Arg2:E3 +* OVERLAP E7 E9 +T115 Biological_structure 589 599 skin plans +T116 Diagnostic_procedure 553 581 3-dimensional reconstruction +E33 Diagnostic_procedure:T116 +* OVERLAP E10 E33 +R57 MODIFY Arg1:T115 Arg2:E33 +R58 MODIFY Arg1:E11 Arg2:E33 +T117 Detailed_description 645 655 right side +T118 Detailed_description 671 677 simple +R59 MODIFY Arg1:T117 Arg2:T22 +* OVERLAP E12 E13 E34 E14 +T119 Sign_symptom 678 694 dysmorphic rough +E34 Sign_symptom:T119 +#2 AnnotatorNotes E34 Seems to refer to a sign, though may be a disease/disorder +R60 MODIFY Arg1:T118 Arg2:E34 +R61 MODIFY Arg1:E34 Arg2:T117 +T120 Diagnostic_procedure 850 856 images +E35 Diagnostic_procedure:T120 +#3 AnnotatorNotes E35 Seems to refer to figures in report +T121 Detailed_description 844 849 upper +R62 MODIFY Arg1:T121 Arg2:E35 +R63 MODIFY Arg1:E25 Arg2:E35 +* OVERLAP E25 E27 E15 E42 +R64 MODIFY Arg1:T37 Arg2:E27 +T99 Biological_structure 1045 1060 neck-chin angle +R41 MODIFY Arg1:T98 Arg2:T99 +R65 MODIFY Arg1:T99 Arg2:E27 +T122 Diagnostic_procedure 830 838 observed +E26 Diagnostic_procedure:T122 +R66 MODIFY Arg1:T30 Arg2:E26 +R67 MODIFY Arg1:T29 Arg2:E26 +* OVERLAP E26 E35 +T123 Detailed_description 1143 1171 shorter on the affected side +R68 MODIFY Arg1:T123 Arg2:T40 +R69 MODIFY Arg1:T123 Arg2:T39 +R70 MODIFY Arg1:T123 Arg2:T38 +R71 MODIFY Arg1:T39 Arg2:E15 +R72 MODIFY Arg1:T40 Arg2:E15 +R73 MODIFY Arg1:T38 Arg2:E15 +T124 Biological_structure 1184 1194 oral rhyme +#4 AnnotatorNotes T124 Based on context; need confirmation on what this is +T125 Detailed_description 1173 1180 Tilting +R74 MODIFY Arg1:T125 Arg2:T124 +R75 MODIFY Arg1:T125 Arg2:T34 +R76 MODIFY Arg1:T125 Arg2:T33 +T126 Diagnostic_procedure 1554 1582 3-dimensional reconstruction +E36 Diagnostic_procedure:T126 +T127 Diagnostic_procedure 1686 1714 3-dimensional reconstruction +E37 Diagnostic_procedure:T127 +T128 Biological_structure 1675 1685 Mandibular +R77 MODIFY Arg1:T128 Arg2:E37 +T129 Detailed_description 1780 1790 right side +T130 Disease_disorder 1768 1779 hypoplastic +E38 Disease_disorder:T130 +R78 MODIFY Arg1:E38 Arg2:T129 +T131 Detailed_description 1799 1808 asymmetry +R79 MODIFY Arg1:T131 Arg2:T56 +T132 Biological_structure 1655 1673 left hemimandibula +T133 Biological_structure 1645 1650;1660 1673 right hemimandibula +T134 Diagnostic_procedure 1627 1637 morphology +E39 Diagnostic_procedure:T134 +R80 SUB_PROCEDURE Arg1:E39 Arg2:E36 +R81 MODIFY Arg1:T54 Arg2:E36 +R82 MODIFY Arg1:T133 Arg2:E39 +R83 MODIFY Arg1:T132 Arg2:E39 +T135 Diagnostic_procedure 1497 1507 dimensions +E40 Diagnostic_procedure:T135 +R84 MODIFY Arg1:T52 Arg2:E40 +T136 Disease_disorder 1256 1274 form abnormalities +E41 Disease_disorder:T136 +A2 POLARITY E41 NEG +T137 Diagnostic_procedure 1297 1312 mixed dentition +E42 Diagnostic_procedure:T137 +T138 Disease_disorder 1246 1252;1261 1274 Number abnormalities +E43 Disease_disorder:T138 +A3 POLARITY E43 NEG +R85 BEFORE Arg1:E41 Arg2:E42 +R86 BEFORE Arg1:E43 Arg2:E42 +R87 MODIFY Arg1:T124 Arg2:E15 +R88 MODIFY Arg1:T34 Arg2:E15 +R89 MODIFY Arg1:T33 Arg2:E15 +* OVERLAP E39 E37 +T139 Detailed_description 1736 1741 shift +R90 MODIFY Arg1:T139 Arg2:T55 +T140 Lab_value 1866 1871 short +T141 Lab_value 1876 1880 wide +T142 Detailed_description 1855 1865 dysmorphic +T143 Detailed_description 2272 2287 normally formed +T144 Detailed_description 2487 2508 normal representation +R91 MODIFY Arg1:T144 Arg2:T74 +T145 Sign_symptom 2560 2576 dysmorphic rough +E44 Sign_symptom:T145 +R92 MODIFY Arg1:T76 Arg2:T75 +R93 MODIFY Arg1:T75 Arg2:E44 +R94 MODIFY Arg1:E44 Arg2:T74 +T146 Sign_symptom 3182 3198 dysmorphic rough +E45 Sign_symptom:T146 +R95 MODIFY Arg1:T87 Arg2:E24 +R96 MODIFY Arg1:T90 Arg2:T87 +T147 Lab_value 3104 3109 short +T148 Lab_value 3114 3118 wide +R97 MODIFY Arg1:T147 Arg2:T90 +R98 MODIFY Arg1:T148 Arg2:T90 +R99 MODIFY Arg1:T102 Arg2:T101 +R100 MODIFY Arg1:E28 Arg2:T101 +R101 MODIFY Arg1:T101 Arg2:E24 +R102 MODIFY Arg1:E45 Arg2:E24 +R103 MODIFY Arg1:T105 Arg2:E24 +R104 MODIFY Arg1:T109 Arg2:E24 +R105 MODIFY Arg1:T85 Arg2:E23 +R106 MODIFY Arg1:T85 Arg2:E22 +R107 MODIFY Arg1:T84 Arg2:E23 +R108 MODIFY Arg1:T84 Arg2:E22 +R109 MODIFY Arg1:T86 Arg2:E23 +R110 MODIFY Arg1:T86 Arg2:E22 +T149 Detailed_description 2932 2941 unaltered +R111 MODIFY Arg1:T149 Arg2:E23 +R112 MODIFY Arg1:T149 Arg2:E22 +A4 TREND E23 STAY +A5 TREND E22 STAY +* OVERLAP E22 E23 E24 E46 +T150 Detailed_description 2681 2688 visible +T151 Detailed_description 2708 2741 articulated in an abnormal manner +T152 Detailed_description 2743 2765 reduce contact surface +R113 MODIFY Arg1:T152 Arg2:T151 +R114 MODIFY Arg1:T150 Arg2:T78 +R115 MODIFY Arg1:T150 Arg2:T77 +R116 MODIFY Arg1:T151 Arg2:T78 +R117 MODIFY Arg1:T151 Arg2:T77 +T153 Detailed_description 2824 2831 regular +T154 Diagnostic_procedure 2832 2842 morphology +E46 Diagnostic_procedure:T154 +R118 MODIFY Arg1:T79 Arg2:E46 +R119 MODIFY Arg1:T153 Arg2:E46 +T155 Detailed_description 2784 2804 difficult to observe +R120 MODIFY Arg1:T155 Arg2:T79 +R121 MODIFY Arg1:T143 Arg2:T62 +T156 Detailed_description 2292 2345 totally occupied by dense materials from soft tissues +R122 MODIFY Arg1:T156 Arg2:T62 +R123 MODIFY Arg1:T32 Arg2:E20 +* OVERLAP E20 E18 E19 E17 E21 E50 +T157 Disease_disorder 2060 2071 pneumatized +E47 Disease_disorder:T157 +A6 POLARITY E47 NEG +T158 Detailed_description 2076 2119 occupied by dense materials from soft parts +R125 MODIFY Arg1:T158 Arg2:E17 +T159 Coreference 1929 1934 study +E48 Coreference:T159 +R126 IDENTICAL Arg1:E48 Arg2:E3 +R127 MODIFY Arg1:T53 Arg2:E48 +R128 MODIFY Arg1:E16 Arg2:T59 +R129 MODIFY Arg1:E17 Arg2:T59 +#5 AnnotatorNotes E47 May be diso +R124 MODIFY Arg1:E47 Arg2:E17 +T160 Diagnostic_procedure 1902 1911 scansions +E49 Diagnostic_procedure:T160 +T161 Detailed_description 1884 1889 axial +T162 Detailed_description 1894 1901 coronal +R130 MODIFY Arg1:T162 Arg2:E49 +R131 MODIFY Arg1:T161 Arg2:E49 +R132 MODIFY Arg1:T142 Arg2:T56 +R133 MODIFY Arg1:T140 Arg2:T56 +R134 MODIFY Arg1:T141 Arg2:T56 +R135 MODIFY Arg1:T56 Arg2:E49 +R136 MODIFY Arg1:T139 Arg2:T129 +R137 MODIFY Arg1:T55 Arg2:E37 +R138 MODIFY Arg1:T56 Arg2:E37 +R139 SUB_PROCEDURE Arg1:E49 Arg2:E37 +* OVERLAP E49 E48 +T163 Coreference 2471 2485 our instrument +E50 Coreference:T163 +R140 IDENTICAL Arg1:E50 Arg2:E5 +R141 MODIFY Arg1:T74 Arg2:E50 +R142 MODIFY Arg1:T80 Arg2:E50 +* OVERLAP E2 E3 +R143 BEFORE Arg1:E31 Arg2:E2 +* OVERLAP E1 E31