--- a +++ b/processing/MACCROBAT/25139918.ann @@ -0,0 +1,376 @@ +T1 Age 2 13 45-year-old +T2 Sex 14 19 woman +T3 Clinical_event 20 28 presents +E1 Clinical_event:T3 +T4 Sign_symptom 97 101 pain +E2 Sign_symptom:T4 +T5 Nonbiological_location 36 56 general practitioner +R1 MODIFY Arg1:T5 Arg2:E1 +T6 Biological_structure 88 96 shoulder +T7 Biological_structure 79 83 neck +R2 MODIFY Arg1:T6 Arg2:E2 +R3 MODIFY Arg1:T7 Arg2:E2 +T8 Detailed_description 68 78 left-sided +R4 MODIFY Arg1:T8 Arg2:E2 +T9 Sign_symptom 107 111 pain +E3 Sign_symptom:T9 +T10 Severity 116 120 mild +R5 MODIFY Arg1:T10 Arg2:E3 +T11 Sign_symptom 3887 3891 pain +E4 Sign_symptom:T11 +A1 POLARITY E4 NEG +T12 Biological_structure 3878 3886 shoulder +T13 Biological_structure 3869 3873 neck +R6 MODIFY Arg1:T12 Arg2:E4 +R7 MODIFY Arg1:T13 Arg2:E4 +T14 History 186 259 denied a history of smoking, excessive alcohol use and radiation exposure +T15 History 156 180 history was unremarkable +T16 Detailed_description 125 137 non-specific +R8 MODIFY Arg1:T16 Arg2:E3 +T17 Diagnostic_procedure 261 281 Physical examination +E5 Diagnostic_procedure:T17 +T18 Sign_symptom 320 335 lymphadenopathy +E6 Sign_symptom:T18 +T19 Biological_structure 311 319 cervical +R9 MODIFY Arg1:T19 Arg2:E6 +T20 Detailed_description 300 310 left sided +T21 Severity 295 299 mild +R10 MODIFY Arg1:T20 Arg2:E6 +R11 MODIFY Arg1:T21 Arg2:E6 +T22 Diagnostic_procedure 345 356 blood tests +E7 Diagnostic_procedure:T22 +T23 Diagnostic_procedure 386 393 calcium +E8 Diagnostic_procedure:T23 +T24 Lab_value 366 385 borderline elevated +E9 Lab_value:T24 +T25 Lab_value 397 407 10.5 mg/dL +E10 Lab_value:T25 +R12 MODIFY Arg1:E10 Arg2:E8 +R13 MODIFY Arg1:E9 Arg2:E8 +T26 Lab_value 490 499 286 pg/mL +E11 Lab_value:T26 +T27 Nonbiological_location 532 546 otolaryngology +T28 Clinical_event 520 528 referred +E12 Clinical_event:T28 +R14 MODIFY Arg1:T27 Arg2:E12 +T29 Diagnostic_procedure 461 480 parathyroid hormone +E13 Diagnostic_procedure:T29 +R15 MODIFY Arg1:E11 Arg2:E13 +T30 Lab_value 452 460 elevated +E14 Lab_value:T30 +R16 MODIFY Arg1:E14 Arg2:E13 +T31 Diagnostic_procedure 579 589 ultrasound +E15 Diagnostic_procedure:T31 +R17 SUB_PROCEDURE Arg1:E8 Arg2:E7 +T32 Diagnostic_procedure 423 430 work up +E16 Diagnostic_procedure:T32 +R18 SUB_PROCEDURE Arg1:E13 Arg2:E16 +T33 Biological_structure 571 578 Thyroid +R19 MODIFY Arg1:T33 Arg2:E15 +T34 Sign_symptom 610 616 nodule +E17 Sign_symptom:T34 +T35 Detailed_description 599 609 hypoechoic +R20 MODIFY Arg1:T35 Arg2:E17 +T36 Biological_structure 624 654 left lower lobe of the thyroid +R21 MODIFY Arg1:T36 Arg2:E17 +T37 Diagnostic_procedure 656 658 CT +E18 Diagnostic_procedure:T37 +T38 Biological_structure 671 675 neck +R22 MODIFY Arg1:T38 Arg2:E18 +T39 Sign_symptom 702 708 nodule +E19 Sign_symptom:T39 +T40 Detailed_description 692 701 hypodense +R23 MODIFY Arg1:T40 Arg2:E19 +T41 Distance 687 691 2 cm +R24 MODIFY Arg1:T41 Arg2:E19 +T42 Biological_structure 716 767 posterior inferior aspect of the left lower thyroid +R25 MODIFY Arg1:T42 Arg2:E19 +T43 Diagnostic_procedure 772 781 sestamibi +E20 Diagnostic_procedure:T43 +#1 AnnotatorNotes E20 Technetium (99mTc) sestamibi +T44 Sign_symptom 794 810 increased uptake +E21 Sign_symptom:T44 +T45 Biological_structure 821 856 lower pole of the left thyroid lobe +R26 MODIFY Arg1:T45 Arg2:E21 +T46 Diagnostic_procedure 867 870 PTH +E22 Diagnostic_procedure:T46 +T47 Lab_value 858 866 Elevated +E23 Lab_value:T47 +R27 MODIFY Arg1:E23 Arg2:E22 +T48 Sign_symptom 885 893 aberrant +E24 Sign_symptom:T48 +T49 Biological_structure 894 911 parathyroid gland +R28 MODIFY Arg1:T49 Arg2:E24 +T50 Diagnostic_procedure 915 922 imaging +E25 Diagnostic_procedure:T50 +T51 Disease_disorder 940 959 hyperparathyroidism +E26 Disease_disorder:T51 +A2 POLARITY E26 UNCERTAIN +T52 Detailed_description 932 939 primary +R29 MODIFY Arg1:T52 Arg2:E26 +T53 Disease_disorder 975 994 hyperparathyroidism +E27 Disease_disorder:T53 +T54 Disease_disorder 1014 1026 bone disease +E28 Disease_disorder:T54 +T55 Disease_disorder 1028 1040 renal stones +E29 Disease_disorder:T55 +T56 Disease_disorder 1045 1070 neuromuscular dysfunction +E30 Disease_disorder:T56 +T57 Diagnostic_procedure 1098 1118 screening modalities +E31 Diagnostic_procedure:T57 +T58 Sign_symptom 1161 1173 asymptomatic +E32 Sign_symptom:T58 +T59 Disease_disorder 1184 1203 hyperparathyroidism +E33 Disease_disorder:T59 +T60 Detailed_description 1176 1183 Primary +R30 MODIFY Arg1:T60 Arg2:E33 +T61 Disease_disorder 1245 1252 adenoma +E34 Disease_disorder:T61 +T62 Biological_structure 1233 1244 parathyroid +R31 MODIFY Arg1:T62 Arg2:E34 +T63 Disease_disorder 1292 1303 hyperplasia +E35 Disease_disorder:T63 +T64 Biological_structure 1280 1291 parathyroid +R32 MODIFY Arg1:T64 Arg2:E35 +T65 Disease_disorder 1373 1382 carcinoma +E36 Disease_disorder:T65 +T66 Biological_structure 1361 1372 parathyroid +R33 MODIFY Arg1:T66 Arg2:E36 +T67 Diagnostic_procedure 1408 1411 PTH +E37 Diagnostic_procedure:T67 +T68 Lab_value 1393 1401 elevated +E38 Lab_value:T68 +T69 Detailed_description 1402 1407 serum +R34 MODIFY Arg1:T69 Arg2:E37 +R35 MODIFY Arg1:E38 Arg2:E37 +T70 Diagnostic_procedure 1416 1423 calcium +E39 Diagnostic_procedure:T70 +R36 MODIFY Arg1:E38 Arg2:E39 +T71 Severity 1442 1448 severe +T72 Sign_symptom 1464 1478 manifestations +E40 Sign_symptom:T72 +T73 Biological_structure 1449 1454 renal +T74 Biological_structure 1459 1463 bone +R37 MODIFY Arg1:T74 Arg2:E40 +R38 MODIFY Arg1:T73 Arg2:E40 +R39 MODIFY Arg1:T71 Arg2:E40 +T75 Disease_disorder 1511 1517 cancer +E41 Disease_disorder:T75 +T76 Disease_disorder 1593 1603 metastases +E42 Disease_disorder:T76 +T77 Sign_symptom 1580 1588 invasion +E43 Sign_symptom:T77 +T78 Therapeutic_procedure 1553 1564 operatively +E44 Therapeutic_procedure:T78 +T79 Therapeutic_procedure 1633 1650 parathyroidectomy +E45 Therapeutic_procedure:T79 +T80 Therapeutic_procedure 1778 1785 surgery +E46 Therapeutic_procedure:T80 +T81 Clinical_event 2202 2209 brought +E47 Clinical_event:T81 +T82 Nonbiological_location 2217 2231 operating room +R40 MODIFY Arg1:T82 Arg2:E47 +T83 Therapeutic_procedure 2248 2265 parathyroidectomy +E48 Therapeutic_procedure:T83 +T84 Diagnostic_procedure 3050 3062 P57 staining +E49 Diagnostic_procedure:T84 +T85 Lab_value 3067 3075 negative +E50 Lab_value:T85 +R41 MODIFY Arg1:E50 Arg2:E49 +* OVERLAP E1 E2 E3 +R42 BEFORE Arg1:E3 Arg2:E5 +* OVERLAP E5 E6 E7 E16 +R43 BEFORE Arg1:E16 Arg2:E12 +* OVERLAP E12 E15 E17 E18 E19 E20 E21 E22 E24 E25 E26 +T86 Clinical_event 3308 3319 followed up +E51 Clinical_event:T86 +T87 Diagnostic_procedure 3347 3354 imaging +E52 Diagnostic_procedure:T87 +T88 Sign_symptom 3380 3386 tumour +E53 Sign_symptom:T88 +A3 POLARITY E53 UNCERTAIN +T89 Detailed_description 3371 3379 residual +R44 MODIFY Arg1:T89 Arg2:E53 +T90 Diagnostic_procedure 3404 3413 sestamibi +E54 Diagnostic_procedure:T90 +T91 Diagnostic_procedure 3418 3446 positron emission tomography +E55 Diagnostic_procedure:T91 +T92 Diagnostic_procedure 3448 3451 PET +E56 Diagnostic_procedure:T92 +R45 IDENTICAL Arg1:E56 Arg2:E55 +T93 Sign_symptom 2056 2060 pain +E57 Sign_symptom:T93 +T94 Diagnostic_procedure 2080 2083 PTH +E58 Diagnostic_procedure:T94 +T95 Lab_value 2071 2079 elevated +E59 Lab_value:T95 +R46 MODIFY Arg1:E59 Arg2:E58 +T96 Age 2093 2118 younger than 50 years old +T97 Therapeutic_procedure 2143 2150 surgery +E60 Therapeutic_procedure:T97 +R47 AFTER Arg1:E26 Arg2:E57 +* OVERLAP E57 E58 +R48 BEFORE Arg1:E58 Arg2:E60 +R49 AFTER Arg1:E60 Arg2:E47 +R50 BEFORE Arg1:E47 Arg2:E48 +T98 Diagnostic_procedure 1852 1878 glomerular filtration rate +E61 Diagnostic_procedure:T98 +T99 Diagnostic_procedure 1891 1911 bone density T-score +E62 Diagnostic_procedure:T99 +T100 Disease_disorder 1946 1955 fractures +E63 Disease_disorder:T100 +T101 Diagnostic_procedure 1976 1983 calcium +E64 Diagnostic_procedure:T101 +T102 Detailed_description 1970 1975 serum +R51 MODIFY Arg1:T102 Arg2:E64 +T103 Sign_symptom 2313 2317 firm +E65 Sign_symptom:T103 +T104 Biological_structure 2289 2306 parathyroid gland +R52 MODIFY Arg1:T104 Arg2:E65 +T105 Sign_symptom 2330 2338 adherent +E66 Sign_symptom:T105 +T106 Detailed_description 2322 2329 densely +R53 MODIFY Arg1:T106 Arg2:E66 +R54 MODIFY Arg1:T104 Arg2:E66 +T107 Biological_structure 2346 2361 thyroid capsule +R55 MODIFY Arg1:T107 Arg2:E66 +T108 Biological_structure 2376 2388 strap muscle +R56 MODIFY Arg1:T108 Arg2:E66 +T109 Therapeutic_procedure 2413 2420 dissect +E67 Therapeutic_procedure:T109 +A4 POLARITY E67 MAYBE_NEG +R57 SUB_PROCEDURE Arg1:E67 Arg2:E48 +T110 Sign_symptom 2443 2451 invasion +E68 Sign_symptom:T110 +A5 POLARITY E68 NEG +T111 Biological_structure 2461 2468 capsule +T112 Biological_structure 2482 2488 muscle +T113 Biological_structure 2501 2512 lymph nodes +R58 MODIFY Arg1:T111 Arg2:E68 +R59 MODIFY Arg1:T112 Arg2:E68 +R60 MODIFY Arg1:T113 Arg2:E68 +T114 Diagnostic_procedure 2518 2535 resected specimen +E69 Diagnostic_procedure:T114 +T115 Color 2552 2565 brownish grey +T116 Sign_symptom 2591 2604 necrotic foci +E70 Sign_symptom:T116 +T117 Texture 2610 2627 irregular texture +R61 MODIFY Arg1:T115 Arg2:E69 +R62 MODIFY Arg1:T117 Arg2:E69 +T118 Disease_disorder 2697 2718 parathyroid carcinoma +E71 Disease_disorder:T118 +T119 Sign_symptom 2733 2741 invasion +E72 Sign_symptom:T119 +T120 Biological_structure 2724 2732 capsular +R63 MODIFY Arg1:T120 Arg2:E72 +T121 Sign_symptom 2749 2764 tumour necrosis +E73 Sign_symptom:T121 +T122 Detailed_description 2743 2748 focal +R64 MODIFY Arg1:T122 Arg2:E73 +T123 Sign_symptom 2775 2783 fibrosis +E74 Sign_symptom:T123 +T124 Detailed_description 2766 2774 reactive +R65 MODIFY Arg1:T124 Arg2:E74 +T125 Sign_symptom 2810 2818 invasion +E75 Sign_symptom:T125 +T126 Biological_structure 2794 2809 skeletal muscle +R66 MODIFY Arg1:T126 Arg2:E75 +T127 Therapeutic_procedure 2839 2860 Margins were resected +E76 Therapeutic_procedure:T127 +T128 Diagnostic_procedure 2862 2888 Immunohistochemical stains +E77 Diagnostic_procedure:T128 +T129 Diagnostic_procedure 2906 2911 Ki-67 +E78 Diagnostic_procedure:T129 +T130 Lab_value 2896 2905 increased +E79 Lab_value:T130 +R67 MODIFY Arg1:E79 Arg2:E78 +R68 SUB_PROCEDURE Arg1:E78 Arg2:E77 +T131 Diagnostic_procedure 2941 2946 Bcl-1 +E80 Diagnostic_procedure:T131 +T132 Diagnostic_procedure 2948 2957 cyclin D1 +E81 Diagnostic_procedure:T132 +R69 IDENTICAL Arg1:E81 Arg2:E80 +T133 Lab_value 2934 2940 strong +E82 Lab_value:T133 +R70 MODIFY Arg1:E82 Arg2:E80 +T134 Disease_disorder 3002 3023 parathyroid carcinoma +E83 Disease_disorder:T134 +R71 SUB_PROCEDURE Arg1:E80 Arg2:E77 +T135 Disease_disorder 3102 3124 parathyroid carcinomas +E84 Disease_disorder:T135 +T136 Sign_symptom 3152 3166 hypercalcaemia +E85 Sign_symptom:T136 +T137 Therapeutic_procedure 3556 3565 operation +E86 Therapeutic_procedure:T137 +T138 Therapeutic_procedure 3590 3600 dissection +E87 Therapeutic_procedure:T138 +T139 Therapeutic_procedure 3610 3627 hemithyroidectomy +E88 Therapeutic_procedure:T139 +T140 Detailed_description 3605 3609 left +R72 MODIFY Arg1:T140 Arg2:E88 +T141 Biological_structure 3585 3589 neck +T142 Detailed_description 3580 3584 left +T143 Detailed_description 3572 3579 radical +R73 MODIFY Arg1:T141 Arg2:E87 +R74 MODIFY Arg1:T142 Arg2:E87 +R75 MODIFY Arg1:T143 Arg2:E87 +R76 SUB_PROCEDURE Arg1:E87 Arg2:E86 +R77 SUB_PROCEDURE Arg1:E88 Arg2:E86 +T144 Sign_symptom 3641 3650 recovered +E89 Sign_symptom:T144 +T145 Date 3697 3704 3 years +E90 Date:T145 +T146 Therapeutic_procedure 3722 3729 surgery +E91 Therapeutic_procedure:T146 +T147 Outcome 3743 3768 continues to do very well +E92 Outcome:T147 +T148 Clinical_event 3776 3787 followed up +E93 Clinical_event:T148 +T149 Frequency 3788 3802 every 3 months +R78 MODIFY Arg1:T149 Arg2:E93 +T150 Diagnostic_procedure 3820 3823 PTH +E94 Diagnostic_procedure:T150 +T151 Diagnostic_procedure 3828 3835 calcium +E95 Diagnostic_procedure:T151 +T152 Detailed_description 3814 3819 serum +R79 MODIFY Arg1:T152 Arg2:E94 +T153 Diagnostic_procedure 3917 3928 blood tests +E96 Diagnostic_procedure:T153 +T154 Diagnostic_procedure 3954 3957 PTH +E97 Diagnostic_procedure:T154 +T155 Lab_value 3934 3953 marginally elevated +E98 Lab_value:T155 +T156 Frequency 3893 3902 Sometimes +R80 MODIFY Arg1:T156 Arg2:E98 +R81 MODIFY Arg1:E98 Arg2:E97 +T157 Sign_symptom 3987 3998 eucalcaemic +E99 Sign_symptom:T157 +T158 Diagnostic_procedure 4013 4026 nuclear scans +E100 Diagnostic_procedure:T158 +T159 Diagnostic_procedure 4031 4034 PET +E101 Diagnostic_procedure:T159 +T160 Lab_value 4056 4064 negative +E102 Lab_value:T160 +R82 MODIFY Arg1:E102 Arg2:E101 +R83 MODIFY Arg1:E102 Arg2:E100 +T161 Frequency 4108 4122 every 3 months +T162 Clinical_event 4098 4107 monitored +E103 Clinical_event:T162 +R84 MODIFY Arg1:T161 Arg2:E103 +R85 SUB_PROCEDURE Arg1:E97 Arg2:E96 +R86 SUB_PROCEDURE Arg1:E48 Arg2:E60 +* OVERLAP E48 E65 E66 E67 E68 E69 E70 +T163 Detailed_description 2581 2590 scattered +R87 MODIFY Arg1:T163 Arg2:E70 +T164 Diagnostic_procedure 2646 2655 pathology +E104 Diagnostic_procedure:T164 +R88 BEFORE Arg1:E70 Arg2:E104 +* OVERLAP E104 E71 E72 E73 E74 E75 E76 E77 E83 E49 +R89 BEFORE Arg1:E49 Arg2:E51 +* OVERLAP E51 E52 E53 E54 E55 +R90 BEFORE Arg1:E55 Arg2:E86 +R91 BEFORE Arg1:E86 Arg2:E89 +R92 BEFORE Arg1:E89 Arg2:E90 +R93 AFTER Arg1:E90 Arg2:E91 +R94 BEFORE Arg1:E91 Arg2:E92 +* OVERLAP E92 E93 E94 E95 E4 E96 E99 E100 E101 E103