--- a +++ b/processing/MACCROBAT/23897372.ann @@ -0,0 +1,300 @@ +T1 Age 2 13 60-year-old +T2 Personal_background 14 23 Caucasian +T3 Sex 24 29 woman +T4 History 35 65 no significant medical history +T5 Sign_symptom 76 96 exercise intolerance +E1 Sign_symptom:T5 +T6 Sign_symptom 98 105 fatigue +E2 Sign_symptom:T6 +T7 Sign_symptom 110 129 shortness of breath +E3 Sign_symptom:T7 +T8 Detailed_description 133 141 exertion +R1 MODIFY Arg1:T8 Arg2:E3 +T9 Duration 151 171 several months prior +E4 Duration:T9 +T10 Clinical_event 179 191 presentation +E5 Clinical_event:T10 +T11 Nonbiological_location 199 216 outpatient clinic +R2 MODIFY Arg1:T11 Arg2:E5 +T12 Sign_symptom 272 277 cough +E6 Sign_symptom:T12 +T13 Detailed_description 268 271 dry +R3 MODIFY Arg1:T13 Arg2:E6 +T14 Sign_symptom 279 288 orthopnea +E7 Sign_symptom:T14 +T15 Sign_symptom 311 319 dyspnoea +E8 Sign_symptom:T15 +T16 Detailed_description 301 310 nocturnal +T17 Detailed_description 290 300 paroxysmal +R4 MODIFY Arg1:T16 Arg2:E8 +R5 MODIFY Arg1:T17 Arg2:E8 +T18 Sign_symptom 333 341 weakness +E9 Sign_symptom:T18 +T19 Detailed_description 321 332 generalised +R6 MODIFY Arg1:T19 Arg2:E9 +T20 Sign_symptom 359 367 numbness +E10 Sign_symptom:T20 +T21 Biological_structure 375 380 hands +T22 Biological_structure 385 389 feet +R7 MODIFY Arg1:T21 Arg2:E10 +R8 MODIFY Arg1:T22 Arg2:E10 +T23 Detailed_description 346 358 intermittent +R9 MODIFY Arg1:T23 Arg2:E10 +T24 Activity 423 430 smoking +E11 Activity:T24 +A1 POLARITY E11 NEG +T25 Activity 432 439 alcohol +E12 Activity:T25 +A2 POLARITY E12 NEG +T26 Activity 443 456 illicit drugs +E13 Activity:T26 +A3 POLARITY E13 NEG +T27 Diagnostic_procedure 458 478 Physical examination +E14 Diagnostic_procedure:T27 +T28 Lab_value 483 495 unremarkable +R10 MODIFY Arg1:T28 Arg2:E14 +T29 Sign_symptom 523 533 distension +E15 Sign_symptom:T29 +T30 Outcome 2470 2479 succumbed +E16 Outcome:T30 +T31 Disease_disorder 2483 2503 sudden cardiac death +E17 Disease_disorder:T31 +T32 Biological_structure 508 522 jugular venous +R11 MODIFY Arg1:T32 Arg2:E15 +T33 Sign_symptom 543 559 S1 and S2 sounds +E18 Sign_symptom:T33 +T34 Sign_symptom 571 579 crackles +E19 Sign_symptom:T34 +T35 Detailed_description 561 570 bilateral +R12 MODIFY Arg1:T35 Arg2:E19 +T36 Diagnostic_procedure 583 600 lung auscultation +E20 Diagnostic_procedure:T36 +T37 Sign_symptom 623 629 oedema +E21 Sign_symptom:T37 +T38 Detailed_description 615 622 pitting +T39 Detailed_description 605 614 bilateral +R13 MODIFY Arg1:T39 Arg2:E21 +R14 MODIFY Arg1:T38 Arg2:E21 +T40 Diagnostic_procedure 637 642 X-ray +E22 Diagnostic_procedure:T40 +T41 Biological_structure 631 636 Chest +R15 MODIFY Arg1:T41 Arg2:E22 +T42 Sign_symptom 650 662 cardiomegaly +E23 Sign_symptom:T42 +T43 Sign_symptom 664 680 pulmonary oedema +E24 Sign_symptom:T43 +T44 Sign_symptom 707 724 pleural effusions +E25 Sign_symptom:T44 +T45 Severity 685 696 small-sized +T46 Detailed_description 697 706 bilateral +R16 MODIFY Arg1:T46 Arg2:E25 +R17 MODIFY Arg1:T45 Arg2:E25 +T47 Diagnostic_procedure 736 739 ECG +E26 Diagnostic_procedure:T47 +T48 Detailed_description 728 735 12-lead +R18 MODIFY Arg1:T48 Arg2:E26 +T49 Diagnostic_procedure 760 772 sinus rhythm +E27 Diagnostic_procedure:T49 +T50 Lab_value 753 759 normal +R19 MODIFY Arg1:T50 Arg2:E27 +T51 Sign_symptom 774 795 low-voltage complexes +E28 Sign_symptom:T51 +T52 Sign_symptom 808 828 right-axis deviation +E29 Sign_symptom:T52 +T53 Severity 800 807 extreme +R20 MODIFY Arg1:T53 Arg2:E29 +T54 Diagnostic_procedure 841 869 Transthoracic echocardiogram +E30 Diagnostic_procedure:T54 +T55 Diagnostic_procedure 871 874 TTE +E31 Diagnostic_procedure:T55 +R21 IDENTICAL Arg1:E31 Arg2:E30 +R22 CAUSE Arg1:E17 Arg2:E16 +T56 Sign_symptom 914 925 hypertrophy +E32 Sign_symptom:T56 +T57 Biological_structure 900 913 biventricular +T58 Detailed_description 889 899 asymmetric +R23 MODIFY Arg1:T57 Arg2:E32 +R24 MODIFY Arg1:T58 Arg2:E32 +T59 Diagnostic_procedure 941 958 ejection fraction +E33 Diagnostic_procedure:T59 +T60 Lab_value 931 940 preserved +R25 MODIFY Arg1:T60 Arg2:E33 +T61 Lab_value 962 965 60% +R26 MODIFY Arg1:T61 Arg2:E33 +T62 Diagnostic_procedure 994 1011 systolic pressure +E34 Diagnostic_procedure:T62 +T63 Lab_value 967 975 elevated +T64 Biological_structure 976 993 right-ventricular +R27 MODIFY Arg1:T64 Arg2:E34 +R28 MODIFY Arg1:T63 Arg2:E34 +T65 Lab_value 1015 1023 36 mm Hg +R29 MODIFY Arg1:T65 Arg2:E34 +T66 Diagnostic_procedure 1037 1055 myocardial texture +E35 Diagnostic_procedure:T66 +T67 Lab_value 1028 1036 abnormal +R30 MODIFY Arg1:T67 Arg2:E35 +T68 Texture 1071 1089 granular sparkling +R31 MODIFY Arg1:T68 Arg2:E35 +T69 Diagnostic_procedure 1112 1124 CT angiogram +E36 Diagnostic_procedure:T69 +T70 Biological_structure 1103 1111 Coronary +R32 MODIFY Arg1:T70 Arg2:E36 +T71 Lab_value 1138 1144 normal +R33 MODIFY Arg1:T71 Arg2:E36 +T72 Biological_structure 1145 1162 coronary arteries +R34 MODIFY Arg1:T72 Arg2:T71 +T73 Diagnostic_procedure 1186 1189 MRI +E37 Diagnostic_procedure:T73 +T74 Biological_structure 1178 1185 cardiac +R35 MODIFY Arg1:T74 Arg2:E37 +T75 Sign_symptom 1236 1255 delayed enhancement +E38 Sign_symptom:T75 +T76 Biological_structure 1221 1235 subendocardial +T77 Detailed_description 1213 1220 diffuse +T78 Detailed_description 1203 1208 early +R36 MODIFY Arg1:T76 Arg2:E38 +R37 MODIFY Arg1:T77 Arg2:E38 +R38 MODIFY Arg1:T78 Arg2:E38 +T79 Disease_disorder 1272 1303 infiltrative myocardial disease +E39 Disease_disorder:T79 +A4 POLARITY E39 UNCERTAIN +T80 Sign_symptom 1334 1345 hypertrophy +E40 Sign_symptom:T80 +T81 Detailed_description 1312 1319 diffuse +T82 Biological_structure 1320 1333 biventricular +R39 MODIFY Arg1:T82 Arg2:E40 +R40 MODIFY Arg1:T81 Arg2:E40 +T83 Diagnostic_procedure 1359 1376 ejection fraction +E41 Diagnostic_procedure:T83 +T84 Lab_value 1352 1358 normal +R41 MODIFY Arg1:T84 Arg2:E41 +T85 Therapeutic_procedure 1417 1438 heart catheterisation +E42 Therapeutic_procedure:T85 +T86 Detailed_description 1411 1416 right +R42 MODIFY Arg1:T86 Arg2:E42 +T87 Diagnostic_procedure 1459 1465 biopsy +E43 Diagnostic_procedure:T87 +T88 Biological_structure 1444 1458 endomyocardial +R43 MODIFY Arg1:T88 Arg2:E43 +T89 Disease_disorder 1485 1496 amyloidosis +E44 Disease_disorder:T89 +T90 Detailed_description 1477 1484 diffuse +R44 MODIFY Arg1:T90 Arg2:E44 +T91 Sign_symptom 1512 1534 proteinaceous material +E45 Sign_symptom:T91 +T92 Detailed_description 1502 1511 amorphous +R45 MODIFY Arg1:T92 Arg2:E45 +T93 Biological_structure 1542 1558 cardiac myocytes +R46 MODIFY Arg1:T93 Arg2:E45 +T94 Biological_structure 1570 1583 blood vessels +R47 MODIFY Arg1:T94 Arg2:E45 +T95 Diagnostic_procedure 1608 1623 Congo red stain +E46 Diagnostic_procedure:T95 +T96 Lab_value 1595 1603 positive +R48 MODIFY Arg1:E45 Arg2:E46 +R49 MODIFY Arg1:T96 Arg2:E46 +T97 Diagnostic_procedure 1647 1668 laboratory evaluation +E47 Diagnostic_procedure:T97 +T98 Diagnostic_procedure 1690 1709 free λ light chains +E48 Diagnostic_procedure:T98 +T99 Lab_value 1680 1688 elevated +R50 MODIFY Arg1:T99 Arg2:E48 +T100 Lab_value 1711 1720 86.3 mg/L +R51 MODIFY Arg1:T100 Arg2:E48 +T101 Diagnostic_procedure 1759 1778 Bence-Jones protein +E49 Diagnostic_procedure:T101 +T102 Lab_value 1750 1758 positive +R52 MODIFY Arg1:T102 Arg2:E49 +T103 Detailed_description 1800 1805 urine +R53 MODIFY Arg1:T103 Arg2:E49 +T104 Lab_value 1780 1791 0.37 g/24 h +R54 MODIFY Arg1:T104 Arg2:E49 +T105 Diagnostic_procedure 1819 1825 biopsy +E50 Diagnostic_procedure:T105 +T106 Biological_structure 1807 1818 Bone marrow +R55 MODIFY Arg1:T106 Arg2:E50 +T107 Disease_disorder 1971 1973 MM +E51 Disease_disorder:T107 +#1 AnnotatorNotes E51 multiple myeloma +T108 Disease_disorder 2029 2040 amyloidosis +E52 Disease_disorder:T108 +T109 Detailed_description 2026 2028 AL +#2 AnnotatorNotes T109 immunoglobulin light chain amyloidosis +R56 MODIFY Arg1:T109 Arg2:E52 +T110 Detailed_description 2017 2025 systemic +R57 MODIFY Arg1:T110 Arg2:E52 +T111 Disease_disorder 2075 2086 amyloidosis +E53 Disease_disorder:T111 +T112 Biological_structure 2067 2074 cardiac +T113 Detailed_description 2056 2065 stage III +T114 Severity 2046 2054 advanced +R58 MODIFY Arg1:T112 Arg2:E53 +R59 MODIFY Arg1:T113 Arg2:E53 +R60 MODIFY Arg1:T114 Arg2:E53 +T115 Disease_disorder 2105 2107 MM +E54 Disease_disorder:T115 +R61 CAUSE Arg1:E54 Arg2:E53 +T116 Diagnostic_procedure 1852 1864 infiltration +E55 Diagnostic_procedure:T116 +T117 Lab_value 1835 1851 greater than 10% +R62 MODIFY Arg1:T117 Arg2:E55 +T118 Detailed_description 1868 1899 CD19− CD56+ CD138+ plasma cells +R63 MODIFY Arg1:T118 Arg2:E55 +T119 Lab_value 1905 1913 reversal +T120 Diagnostic_procedure 1917 1933 marrow κ/λ ratio +E56 Diagnostic_procedure:T120 +R64 MODIFY Arg1:T119 Arg2:E56 +T121 Lab_value 1935 1939 <1:2 +R65 MODIFY Arg1:T121 Arg2:E56 +T122 Disease_disorder 2136 2147 amyloidosis +E57 Disease_disorder:T122 +T123 Biological_structure 2128 2135 cardiac +T124 Severity 2119 2127 advanced +R66 MODIFY Arg1:T123 Arg2:E57 +R67 MODIFY Arg1:T124 Arg2:E57 +T125 Therapeutic_procedure 2193 2229 autologous stem-cell transplantation +E58 Therapeutic_procedure:T125 +A5 POLARITY E58 NEG +T126 Medication 2267 2279 chemotherapy +E59 Medication:T126 +T127 Detailed_description 2258 2266 systemic +R68 MODIFY Arg1:T127 Arg2:E59 +T128 Medication 2285 2294 melphalan +E60 Medication:T128 +T129 Medication 2299 2312 dexamethasone +E61 Medication:T129 +R69 SUB_PROCEDURE Arg1:E60 Arg2:E59 +R70 SUB_PROCEDURE Arg1:E61 Arg2:E59 +T130 Medication 2377 2386 diuretics +E62 Medication:T130 +T131 Medication 2388 2398 β-blockers +E63 Medication:T131 +T132 Medication 2403 2417 ACE inhibitors +E64 Medication:T132 +T133 Diagnostic_procedure 2432 2441 condition +E65 Diagnostic_procedure:T133 +T134 Lab_value 2455 2461 worsen +R71 MODIFY Arg1:T134 Arg2:E65 +* OVERLAP E1 E2 E3 E4 +R72 BEFORE Arg1:E4 Arg2:E5 +* OVERLAP E5 E6 E7 E8 E9 E10 +R73 AFTER Arg1:E10 Arg2:E11 +* OVERLAP E11 E12 E13 +T135 History 391 456 Social history was negative for smoking, alcohol or illicit drugs +R74 BEFORE Arg1:E13 Arg2:E14 +* OVERLAP E14 E15 E18 E19 E20 E21 E22 E23 E24 E25 E26 E27 E28 E29 E30 E32 E33 E34 E35 E36 +R75 BEFORE Arg1:E36 Arg2:E37 +* OVERLAP E37 E38 E39 E40 E41 +R76 BEFORE Arg1:E41 Arg2:E42 +* OVERLAP E42 E43 E44 E45 E46 +R77 BEFORE Arg1:E46 Arg2:E47 +R78 SUB_PROCEDURE Arg1:E48 Arg2:E47 +R79 SUB_PROCEDURE Arg1:E49 Arg2:E47 +* OVERLAP E47 E50 E55 E56 E51 +R80 BEFORE Arg1:E51 Arg2:E52 +* OVERLAP E52 E53 E54 E57 E58 +R81 BEFORE Arg1:E58 Arg2:E59 +R82 BEFORE Arg1:E59 Arg2:E62 +* OVERLAP E62 E63 E64 +R83 BEFORE Arg1:E64 Arg2:E65 +R84 BEFORE Arg1:E65 Arg2:E16