--- a +++ b/processing/MACCROBAT/23124805.ann @@ -0,0 +1,242 @@ +T1 Age 15 25 4-year-old +T2 Sex 26 29 boy +T3 Disease_disorder 55 68 Blau syndrome +E1 Disease_disorder:T3 +T4 Disease_disorder 142 151 arthritis +E2 Disease_disorder:T4 +T5 Biological_structure 126 131 ankle +T6 Biological_structure 136 141 wrist +T7 Disease_disorder 152 165 tenosynovitis +E3 Disease_disorder:T7 +T8 Sign_symptom 186 190 rash +E4 Sign_symptom:T8 +T9 Biological_attribute 175 185 eczematous +T10 Detailed_description 167 174 diffuse +R1 MODIFY Arg1:T10 Arg2:E4 +R2 MODIFY Arg1:T9 Arg2:E4 +T11 Disease_disorder 196 203 uveitis +E5 Disease_disorder:T11 +T12 Disease_disorder 242 252 granulomas +E6 Disease_disorder:T12 +T13 Detailed_description 229 241 noncaseating +R3 MODIFY Arg1:T13 Arg2:E6 +T14 Diagnostic_procedure 273 286 NOD2 mutation +E7 Diagnostic_procedure:T14 +T15 Detailed_description 260 272 heterozygous +R4 MODIFY Arg1:T15 Arg2:E7 +T16 Diagnostic_procedure 288 295 p.R334W +E8 Diagnostic_procedure:T16 +R5 IDENTICAL Arg1:E8 Arg2:E7 +T17 Medication 362 377 corticosteroids +E9 Medication:T17 +T18 Administration 345 352 topical +T19 Administration 357 361 oral +R6 MODIFY Arg1:T19 Arg2:E9 +R7 MODIFY Arg1:T18 Arg2:E9 +T20 Duration 383 397 over the years +E10 Duration:T20 +T21 Disease_disorder 398 415 visual impairment +E11 Disease_disorder:T21 +T22 Detailed_description 416 426 progressed +R8 MODIFY Arg1:T22 Arg2:E11 +A1 TREND E11 INC +T23 Disease_disorder 298 316 Ocular involvement +E12 Disease_disorder:T23 +T24 Detailed_description 331 341 controlled +R9 MODIFY Arg1:E9 Arg2:T24 +R10 MODIFY Arg1:T24 Arg2:E12 +T25 Disease_disorder 452 465 Blau syndrome +E13 Disease_disorder:T25 +T26 Disease_disorder 467 476 arthritis +E14 Disease_disorder:T26 +T27 Sign_symptom 481 485 rash +E15 Sign_symptom:T27 +R11 MODIFY Arg1:E13 Arg2:E14 +R12 MODIFY Arg1:E13 Arg2:E15 +T28 Duration 496 505 over time +E16 Duration:T28 +T29 Detailed_description 487 495 subsided +R13 MODIFY Arg1:T29 Arg2:E15 +R14 MODIFY Arg1:T29 Arg2:E14 +A2 TREND E15 DEC +A3 TREND E14 DEC +T30 Disease_disorder 517 527 panuveitis +E17 Disease_disorder:T30 +T31 Detailed_description 507 516 Bilateral +R15 MODIFY Arg1:T31 Arg2:E17 +T33 Medication 589 601 methotrexate +E18 Medication:T33 +T34 Detailed_description 528 538 progressed +R16 MODIFY Arg1:T34 Arg2:E17 +T35 Disease_disorder 619 631 inflammation +E19 Disease_disorder:T35 +T36 Biological_structure 612 618 ocular +R17 MODIFY Arg1:T36 Arg2:E19 +T37 Detailed_description 632 641 persisted +R18 MODIFY Arg1:T37 Arg2:E19 +T38 Medication 672 679 steroid +E20 Medication:T38 +T39 Administration 680 690 injections +T40 Detailed_description 666 671 local +R19 MODIFY Arg1:T40 Arg2:T39 +R20 MODIFY Arg1:T39 Arg2:E20 +T41 Medication 727 755 methylprednisolone treatment +E21 Medication:T41 +T42 Administration 704 715;721 726 intravenous bolus +T43 Administration 716 726 (IV) bolus +R21 IDENTICAL Arg1:T43 Arg2:T42 +R22 MODIFY Arg1:T43 Arg2:E21 +T44 Detailed_description 695 703 repeated +R23 MODIFY Arg1:T44 Arg2:T42 +* OVERLAP E20 E21 E19 E18 +T46 Medication 803 813 infliximab +E22 Medication:T46 +T47 Dosage 828 835;861 879 5 mg/kg every 4 to 6 weeks +T48 Dosage 849 857;861 879 10 mg/kg every 4 to 6 weeks +T50 Administration 858 860 IV +R24 MODIFY Arg1:T47 Arg2:E22 +R25 MODIFY Arg1:T48 Arg2:E22 +R26 MODIFY Arg1:T50 Arg2:E22 +T51 Date 939 978 1 year after this treatment was started +E23 Date:T51 +T52 Disease_disorder 979 986 uveitis +E24 Disease_disorder:T52 +T53 Severity 987 995 worsened +R28 MODIFY Arg1:T53 Arg2:E24 +T55 Medication 1017 1027 infliximab +E25 Medication:T55 +A4 TREND E25 DEC +T56 Detailed_description 1032 1044 discontinued +R29 MODIFY Arg1:T56 Arg2:E25 +T57 Medication 1046 1056 Adalimumab +E26 Medication:T57 +T58 Dosage 1058 1080 24 mg/m2 every 2 weeks +R30 MODIFY Arg1:T58 Arg2:E26 +T60 Medication 1119 1131 methotrexate +E27 Medication:T60 +T61 Dosage 1133 1148 15 mg/m2/weekly +R32 MODIFY Arg1:T61 Arg2:E27 +A5 TREND E27 INC +T49 Lab_value 1154 1163 increased +R27 MODIFY Arg1:T49 Arg2:E27 +T59 Disease_disorder 1174 1188 ocular disease +E28 Disease_disorder:T59 +T62 Detailed_description 1198 1204 active +R31 MODIFY Arg1:T62 Arg2:E28 +T63 Medication 1206 1227 Mycophenolate mofetil +E29 Medication:T63 +T64 Dosage 1229 1238 750 mg/m2 +T65 Medication 1249 1258 abatacept +E30 Medication:T65 +T66 Dosage 1260 1274 10 mg/kg/month +T67 Administration 1275 1277 IV +R33 MODIFY Arg1:T66 Arg2:E30 +R34 MODIFY Arg1:T67 Arg2:E30 +R35 MODIFY Arg1:T64 Arg2:E29 +T70 Disease_disorder 1404 1411 lesions +E32 Disease_disorder:T70 +T71 Biological_structure 1396 1403 retinal +T72 Disease_disorder 1382 1395 granulomatous +E33 Disease_disorder:T72 +T73 Disease_disorder 1433 1445 inflammation +E34 Disease_disorder:T73 +T74 Biological_structure 1416 1432 anterior chamber +R36 MODIFY Arg1:T74 Arg2:E34 +T76 Medication 1551 1579 corticosteroid pulse therapy +E36 Medication:T76 +T77 Dosage 1640 1655 3 boluses/month +T78 Duration 1660 1680 6 consecutive months +E37 Duration:T78 +T79 Medication 1819 1830 canakinumab +E38 Medication:T79 +T80 Dosage 1802 1815 2 mg/kg/month +R37 MODIFY Arg1:T80 Arg2:E38 +T81 Lab_value 1626 1639 an average of +R38 MODIFY Arg1:T81 Arg2:T77 +R39 MODIFY Arg1:T77 Arg2:E36 +* OVERLAP E36 E37 E35 E52 +T75 Medication 1772 1800 IL-1 antibody administration +E35 Medication:T75 +R40 SUB_PROCEDURE Arg1:E38 Arg2:E35 +T82 Disease_disorder 1871 1883 ocular flare +E39 Disease_disorder:T82 +A7 POLARITY E39 NEG +T84 Medication 1900 1921 steroid pulse therapy +E41 Medication:T84 +A8 POLARITY E41 NEG +T83 Medication 1969 1981 methotrexate +E40 Medication:T83 +T85 Administration 1964 1968 oral +R41 MODIFY Arg1:T85 Arg2:E40 +T86 Medication 1995 2005 prednisone +E42 Medication:T86 +T87 Dosage 2007 2020 0.2 mg/kg/day +T88 Lab_value 1986 1994 low-dose +R42 MODIFY Arg1:T88 Arg2:E42 +R43 MODIFY Arg1:T87 Arg2:E42 +A9 TREND E40 STAY +A10 TREND E42 STAY +T89 Diagnostic_procedure 2057 2072 fluorangiograms +E43 Diagnostic_procedure:T89 +T91 Detailed_description 2137 2172 well tolerated with no side effects +T92 Diagnostic_procedure 2190 2206 laboratory tests +E44 Diagnostic_procedure:T92 +T93 Frequency 2218 2225 monthly +T94 Detailed_description 2232 2238 normal +R44 MODIFY Arg1:T94 Arg2:E44 +R45 MODIFY Arg1:T93 Arg2:E44 +T95 Medication 2124 2132 The drug +E45 Medication:T95 +#1 AnnotatorNotes E45 Likely a coreference, but unclear which drug it's referring to. +R46 MODIFY Arg1:T91 Arg2:E45 +* OVERLAP E45 E44 E39 E41 E38 E40 E42 E43 +R47 MODIFY Arg1:E2 Arg2:E1 +R48 MODIFY Arg1:E3 Arg2:E1 +R49 MODIFY Arg1:E4 Arg2:E1 +R50 MODIFY Arg1:E5 Arg2:E1 +* OVERLAP E4 E5 E2 E3 E46 +T90 Diagnostic_procedure 206 216 histologic +E46 Diagnostic_procedure:T90 +R51 MODIFY Arg1:E6 Arg2:E46 +R52 MODIFY Arg1:E46 Arg2:E1 +R53 MODIFY Arg1:E7 Arg2:E1 +* OVERLAP E6 E7 +* OVERLAP E8 E12 +R54 BEFORE Arg1:E9 Arg2:E10 +* OVERLAP E10 E11 E15 E16 E14 +T96 Date 789 801 age 10 years +E47 Date:T96 +T97 Date 545 556 age 5 years +E48 Date:T97 +R55 AFTER Arg1:E17 Arg2:E48 +R56 BEFORE Arg1:E48 Arg2:E18 +R57 BEFORE Arg1:E21 Arg2:E47 +* OVERLAP E47 E22 +R58 BEFORE Arg1:E22 Arg2:E23 +R59 BEFORE Arg1:E16 Arg2:E17 +* OVERLAP E23 E24 +T98 Date 1004 1010 age 12 +E49 Date:T98 +R60 BEFORE Arg1:E24 Arg2:E49 +* OVERLAP E49 E25 +R61 BEFORE Arg1:E25 Arg2:E26 +* OVERLAP E26 E27 E28 +R62 BEFORE Arg1:E28 Arg2:E29 +R63 BEFORE Arg1:E29 Arg2:E30 +T68 Diagnostic_procedure 1311 1342 without significant improvement +E31 Diagnostic_procedure:T68 +A6 TREND E31 STAY +R64 BEFORE Arg1:E30 Arg2:E31 +T99 Date 1347 1359 age 16 years +E50 Date:T99 +R65 BEFORE Arg1:E31 Arg2:E50 +R66 MODIFY Arg1:T71 Arg2:E32 +R67 MODIFY Arg1:E33 Arg2:E32 +* OVERLAP E50 E32 E34 E51 +T100 Sign_symptom 1459 1464 edema +E51 Sign_symptom:T100 +T101 Biological_structure 1451 1458 macular +R68 MODIFY Arg1:T101 Arg2:E51 +T102 Disease_disorder 1489 1507 retinal detachment +E52 Disease_disorder:T102 +R69 BEFORE Arg1:E51 Arg2:E52