--- a +++ b/processing/MACCROBAT/22515939.ann @@ -0,0 +1,247 @@ +T1 Age 2 13 53 year old +T2 Sex 14 20 female +T3 History 21 61 without significant past medical history +T4 Disease_disorder 85 94 pneumonia +E1 Disease_disorder:T4 +T5 Detailed_description 79 84 viral +T6 Severity 72 78 severe +R1 MODIFY Arg1:T5 Arg2:E1 +R2 MODIFY Arg1:T6 Arg2:E1 +T7 Diagnostic_procedure 141 159 respiratory status +E2 Diagnostic_procedure:T7 +T8 Lab_value 120 133 deterioration +T9 Detailed_description 108 119 progressive +T10 Detailed_description 101 106 rapid +R3 MODIFY Arg1:T9 Arg2:T8 +R4 MODIFY Arg1:T10 Arg2:T8 +R5 MODIFY Arg1:T8 Arg2:E2 +T11 Disease_disorder 175 179 ARDS +E3 Disease_disorder:T11 +#1 AnnotatorNotes E3 Acute respiratory distress syndrome +T12 Therapeutic_procedure 184 217 mechanical ventilatory management +E4 Therapeutic_procedure:T12 +T13 Detailed_description 224 237 ARDS protocol +R6 MODIFY Arg1:T13 Arg2:E4 +T14 Diagnostic_procedure 271 282 oxygenation +E5 Diagnostic_procedure:T14 +T15 Lab_value 243 270 unable to maintain adequate +R7 MODIFY Arg1:T15 Arg2:E5 +T16 Therapeutic_procedure 308 312 ECMO +E6 Therapeutic_procedure:T16 +#2 AnnotatorNotes E6 Extracorporeal membrane oxygenation +T17 Detailed_description 305 307 VV +#3 AnnotatorNotes T17 veno-venous +R8 MODIFY Arg1:T17 Arg2:E6 +T18 Diagnostic_procedure 326 358 Transesophageal echocardiography +E7 Diagnostic_procedure:T18 +T19 Diagnostic_procedure 360 363 TEE +E8 Diagnostic_procedure:T19 +R9 IDENTICAL Arg1:E8 Arg2:E7 +T20 Detailed_description 297 304 bedside +R10 MODIFY Arg1:T20 Arg2:E6 +T21 Therapeutic_procedure 399 427 positioning of the guidewire +E9 Therapeutic_procedure:T21 +T22 Therapeutic_procedure 432 439 cannula +E10 Therapeutic_procedure:T22 +T23 Coreference 523 544 guide wire was placed +E11 Coreference:T23 +R11 IDENTICAL Arg1:E11 Arg2:E9 +T24 Biological_structure 476 503 right internal jugular vein +R12 MODIFY Arg1:T24 Arg2:E11 +T25 Detailed_description 451 470 Seldinger technique +R13 MODIFY Arg1:T25 Arg2:E11 +T26 Coreference 582 585 IVC +E12 Coreference:T26 +R14 IDENTICAL Arg1:E12 Arg2:T24 +T27 Coreference 546 572 Placement of the guidewire +E13 Coreference:T27 +R15 IDENTICAL Arg1:E13 Arg2:E11 +T28 Detailed_description 619 645 migration of the guidewire +R16 MODIFY Arg1:T28 Arg2:E13 +T29 Biological_structure 655 670 right ventricle +R17 MODIFY Arg1:T29 Arg2:T28 +T30 Medication 818 825 heparin +E14 Medication:T30 +T31 Dosage 792 802 5000 units +T32 Administration 806 817 intravenous +R18 MODIFY Arg1:T32 Arg2:E14 +R19 MODIFY Arg1:T31 Arg2:E14 +T33 Therapeutic_procedure 887 894 dilated +E15 Therapeutic_procedure:T33 +#4 AnnotatorNotes E15 an intentional dilation, rather than a problematic one +T34 Biological_structure 841 870 right internal jugular venous +R20 MODIFY Arg1:T34 Arg2:E15 +T35 Detailed_description 778 783 bolus +R21 MODIFY Arg1:T35 Arg2:E14 +T36 Disease_disorder 1159 1179 pericardial effusion +E16 Disease_disorder:T36 +T37 Detailed_description 1141 1158 rapidly enlarging +R22 MODIFY Arg1:T37 Arg2:E16 +T38 Sign_symptom 1078 1105 premature ventricular beats +E17 Sign_symptom:T38 +T39 Detailed_description 1069 1077 Multiple +R23 MODIFY Arg1:T39 Arg2:E17 +T40 Lab_value 1032 1067 lost visualization of the guidewire +T41 Coreference 1019 1026 cannula +E18 Coreference:T41 +T42 Diagnostic_procedure 1028 1031 TEE +E19 Diagnostic_procedure:T42 +R24 MODIFY Arg1:T40 Arg2:E19 +#5 AnnotatorNotes T40 a qualitative concept as it's more of a result than a property of how TEE was done +T43 Detailed_description 1002 1018 23 French Avalon +R25 MODIFY Arg1:T43 Arg2:E18 +T44 Therapeutic_procedure 948 964 dilator exchange +E20 Therapeutic_procedure:T44 +R26 SUB_PROCEDURE Arg1:E20 Arg2:E15 +R27 IDENTICAL Arg1:E18 Arg2:E10 +T45 Therapeutic_procedure 1260 1282 surgical decompression +E21 Therapeutic_procedure:T45 +T46 Biological_structure 1290 1307 pericardial space +R28 MODIFY Arg1:T46 Arg2:E21 +T47 Disease_disorder 1360 1377 cardiac tamponade +E22 Disease_disorder:T47 +T48 Diagnostic_procedure 1334 1348 blood pressure +E23 Diagnostic_procedure:T48 +T49 Lab_value 1329 1333 lost +R29 MODIFY Arg1:T49 Arg2:E23 +T50 Detailed_description 1354 1359 acute +R30 MODIFY Arg1:T50 Arg2:E22 +T51 Coreference 1390 1397 cannula +E24 Coreference:T51 +R31 IDENTICAL Arg1:E24 Arg2:E18 +T52 Detailed_description 1414 1448 clamped at the end but not removed +R32 MODIFY Arg1:T52 Arg2:E24 +T53 Therapeutic_procedure 1472 1490 pericardial window +E25 Therapeutic_procedure:T53 +T54 Biological_structure 1461 1471 subxiphoid +R33 MODIFY Arg1:T54 Arg2:E25 +T55 Diagnostic_procedure 1563 1577 blood pressure +E26 Diagnostic_procedure:T55 +T56 Lab_value 1548 1559 restoration +R34 MODIFY Arg1:T56 Arg2:E26 +T57 Sign_symptom 1519 1527 drainage +E27 Sign_symptom:T57 +T58 Biological_structure 1531 1543 venous blood +R35 MODIFY Arg1:T58 Arg2:E27 +T59 Therapeutic_procedure 1579 1590 Transfusion +E28 Therapeutic_procedure:T59 +T60 Clinical_event 1636 1647 transported +E29 Clinical_event:T60 +T61 Nonbiological_location 1655 1669 operating room +R36 MODIFY Arg1:T61 Arg2:E29 +T62 Diagnostic_procedure 1674 1694 surgical exploration +E30 Diagnostic_procedure:T62 +T63 Detailed_description 1383 1389 Avalon +R37 MODIFY Arg1:T63 Arg2:E24 +T64 Detailed_description 1700 1706 Avalon +T65 Coreference 1707 1714 cannula +E31 Coreference:T65 +R38 IDENTICAL Arg1:E31 Arg2:E24 +R39 MODIFY Arg1:T64 Arg2:E31 +T66 Disease_disorder 1733 1743 perforated +E32 Disease_disorder:T66 +T67 Biological_structure 1748 1775 apex of the right ventricle +R40 MODIFY Arg1:T67 Arg2:E32 +T68 Coreference 1781 1787 injury +E33 Coreference:T68 +R41 IDENTICAL Arg1:E33 Arg2:E32 +T69 Therapeutic_procedure 1792 1800 repaired +E34 Therapeutic_procedure:T69 +T70 Coreference 1826 1833 cannula +E35 Coreference:T70 +R42 IDENTICAL Arg1:E35 Arg2:E31 +T71 Detailed_description 1819 1825 Avalon +R43 MODIFY Arg1:T71 Arg2:E35 +T72 Diagnostic_procedure 1875 1878 TEE +E36 Diagnostic_procedure:T72 +T73 Detailed_description 1884 1914 additional direct manipulation +R44 MODIFY Arg1:T73 Arg2:E36 +T74 Biological_structure 1862 1865 IVC +R45 MODIFY Arg1:T74 Arg2:E35 +T75 Therapeutic_procedure 1919 1923 ECMO +E37 Therapeutic_procedure:T75 +T76 Detailed_description 1916 1918 VV +R46 MODIFY Arg1:T76 Arg2:E37 +T77 Diagnostic_procedure 1946 1957 oxygenation +E38 Diagnostic_procedure:T77 +T78 Lab_value 1958 1966 improved +R47 MODIFY Arg1:T78 Arg2:E38 +T79 Disease_disorder 1985 1999 coagulopathies +E39 Disease_disorder:T79 +T80 Therapeutic_procedure 2017 2026 left open +E40 Therapeutic_procedure:T80 +T81 Biological_structure 2005 2012 sternum +R48 MODIFY Arg1:T81 Arg2:E40 +T82 Therapeutic_procedure 2035 2041 closed +E41 Therapeutic_procedure:T82 +T83 Date 2059 2064 day 2 +E42 Date:T83 +T84 Sign_symptom 2132 2145 complications +E43 Sign_symptom:T84 +A1 POLARITY E43 NEG +T85 Detailed_description 2121 2131 infectious +T86 Biological_structure 2110 2117 cardiac +R49 MODIFY Arg1:T85 Arg2:E43 +R50 MODIFY Arg1:T86 Arg2:E43 +T87 Diagnostic_procedure 2154 2173 pulmonary condition +E44 Diagnostic_procedure:T87 +T88 Lab_value 2174 2189 slowly improved +R51 MODIFY Arg1:T88 Arg2:E44 +T89 Therapeutic_procedure 2227 2231 ECMO +E45 Therapeutic_procedure:T89 +T90 Detailed_description 2224 2226 VV +R52 MODIFY Arg1:T90 Arg2:E45 +A2 POLARITY E45 NEG +T91 Date 2249 2254 day 9 +E46 Date:T91 +T92 Clinical_event 2263 2273 discharged +E47 Clinical_event:T92 +T93 Nonbiological_location 2274 2278 home +R53 MODIFY Arg1:T93 Arg2:E47 +T94 Date 2296 2302 day 24 +E48 Date:T94 +T95 Therapeutic_procedure 2324 2335 home oxygen +E49 Therapeutic_procedure:T95 +A3 POLARITY E49 NEG +T96 Diagnostic_procedure 2355 2373 physical functions +E50 Diagnostic_procedure:T96 +T97 Lab_value 2350 2354 full +R54 MODIFY Arg1:T97 Arg2:E50 +T98 Diagnostic_procedure 2403 2421 pulmonary function +E51 Diagnostic_procedure:T98 +T99 Lab_value 2396 2402 normal +R55 MODIFY Arg1:T99 Arg2:E51 +T100 Date 2425 2433 3 months +E52 Date:T100 +T101 Clinical_event 2444 2453 discharge +E53 Clinical_event:T101 +T102 Nonbiological_location 2463 2471 hospital +R56 MODIFY Arg1:T102 Arg2:E53 +* OVERLAP E1 E2 +R57 BEFORE Arg1:E2 Arg2:E3 +* OVERLAP E3 E4 E5 +R58 BEFORE Arg1:E5 Arg2:E6 +* OVERLAP E6 E7 E9 E10 E14 E15 E19 E17 E16 +R59 BEFORE Arg1:E16 Arg2:E21 +* OVERLAP E21 E23 E22 E24 +R60 BEFORE Arg1:E24 Arg2:E25 +* OVERLAP E25 E27 E26 E28 +R61 BEFORE Arg1:E28 Arg2:E29 +* OVERLAP E29 E30 +R62 AFTER Arg1:E30 Arg2:E31 +* OVERLAP E31 E32 E33 +R63 BEFORE Arg1:E33 Arg2:E34 +* OVERLAP E34 E35 E36 +R64 BEFORE Arg1:E36 Arg2:E37 +* OVERLAP E37 E38 E39 E40 +R65 BEFORE Arg1:E40 Arg2:E41 +* OVERLAP E41 E42 +R66 BEFORE Arg1:E42 Arg2:E43 +* OVERLAP E43 E44 +R67 BEFORE Arg1:E44 Arg2:E45 +* OVERLAP E45 E46 +R68 BEFORE Arg1:E46 Arg2:E47 +* OVERLAP E47 E48 E49 +R69 BEFORE Arg1:E49 Arg2:E50 +* OVERLAP E50 E51 E52 +R70 AFTER Arg1:E52 Arg2:E53