[9fab9f]: / modules / RawDB / IE / boolMapToFreq.py

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#!/usr/bin/python
import pandas as pd
import numpy as np
import sys
def getBoolFrequencies(boolData):
df = pd.read_table(boolData, sep="\t")
frequencies = df.groupby('sample_name', axis = 0).sum()
return frequencies
def getFrequencies(data):
df = pd.read_table(data, sep="\t")
columns = list(df)
#frequencies = df.apply(pd.to_numeric, errors = 'ignore')
for i in columns:
#df[i] = df[i].astype('float64')
pd.to_numeric(df[i])
return frequencies
def getCSVFrequencies(data):
df = pd.read_table(data, sep=",")
#frequencies = df.apply(pd.to_numeric, errors = 'ignore')
dft = df.transpose()
dft.rename(columns=dft.iloc[0])
frequencies = dft.drop(dft.index[0])
return frequencies