added	data/Output sets/Ext_val.xlsx
added	data/Output sets/Pheno.xlsx
added	data/Output sets/Plotly_Pie_Chart.png
added	data/Output sets/cluster_sunburst.html
added	data/Output sets/cluster_sunburst_png.png
added	data/Output sets/sunburst.html
added	data/SJS_extval/EnsemblID.to.Entrez.tsv.gz
added	data/SJS_extval/EnsemblID.to.Hugo.v87.tsv.gz
added	data/SJS_extval/Supplementary Tables.xlsx
added	data/SJS_extval/transneo-diagnosis-RNAseq-rawcounts.tsv.gz
added	data/Study_characteristics.xlsx
added	data/Supplementary/C1.Response.xlsx
added	data/Supplementary/E4_2_supp.xlsx
added	data/Supplementary/XVE_response.csv
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added	pathfindR/BioCarta/BioCarta_per_sample_pathway_scores_ER_all.tif
added	pathfindR/BioCarta/BioCarta_per_sample_pathway_scores_ER_resp_non_resp.tif
added	pathfindR/BioCarta/BioCarta_per_sample_pathway_scores_clustered.tif
added	pathfindR/BioCarta/BioCarta_per_sample_pathway_scores_clustered_vertical.tif
added	pathfindR/BioCarta/BioCarta_per_sample_pathway_scores_vertical.tif
added	pathfindR/BioCarta/BioCarta_top10_UpSet_plot.tiff
added	pathfindR/BioCarta/BioCarta_top10_dotplot.tiff
added	pathfindR/BioCarta/BioCarta_top10_dotplot_clustered.tiff
added	pathfindR/BioCarta/BioCarta_top10_term_gene_heatmap.tiff
added	pathfindR/BioCarta/BioCarta_top5_term_gene_graph.tiff