|
a |
|
b/conda.yml |
|
|
1 |
name: predict_drug_clinical_trial |
|
|
2 |
channels: |
|
|
3 |
- rdkit |
|
|
4 |
- conda-forge |
|
|
5 |
- anaconda |
|
|
6 |
- defaults |
|
|
7 |
dependencies: |
|
|
8 |
- _pytorch_select=0.1=cpu_0 |
|
|
9 |
- beautifulsoup4=4.9.3=pyhb0f4dca_0 |
|
|
10 |
- blas=1.0=mkl |
|
|
11 |
- brotlipy=0.7.0=py37haf1e3a3_1000 |
|
|
12 |
- bzip2=1.0.8=h1de35cc_0 |
|
|
13 |
- ca-certificates=2020.10.14=0 |
|
|
14 |
- cairo=1.14.12=hc4e6be7_4 |
|
|
15 |
- certifi=2020.6.20=py37_0 |
|
|
16 |
- cffi=1.14.0=py37hc512035_1 |
|
|
17 |
- cryptography=3.1.1=py37hddc9c9b_0 |
|
|
18 |
- cycler=0.10.0=py37_0 |
|
|
19 |
- decorator=4.4.2=py_0 |
|
|
20 |
- fontconfig=2.13.0=h5d5b041_1 |
|
|
21 |
- freetype=2.10.2=ha233b18_0 |
|
|
22 |
- gettext=0.19.8.1=hb0f4f8b_2 |
|
|
23 |
- glib=2.65.0=hc5f4afa_0 |
|
|
24 |
- icu=58.2=h0a44026_3 |
|
|
25 |
- idna=2.10=py_0 |
|
|
26 |
- intel-openmp=2019.4=233 |
|
|
27 |
- joblib=0.16.0=py_0 |
|
|
28 |
- jpeg=9b=he5867d9_2 |
|
|
29 |
- kiwisolver=1.2.0=py37h04f5b5a_0 |
|
|
30 |
- lcms2=2.11=h92f6f08_0 |
|
|
31 |
- libboost=1.67.0=hebc422b_4 |
|
|
32 |
- libcxx=10.0.0=1 |
|
|
33 |
- libedit=3.1.20191231=haf1e3a3_0 |
|
|
34 |
- libffi=3.3=h0a44026_1 |
|
|
35 |
- libgfortran=3.0.1=h93005f0_2 |
|
|
36 |
- libiconv=1.16=h1de35cc_0 |
|
|
37 |
- libpng=1.6.37=ha441bb4_0 |
|
|
38 |
- libtiff=4.1.0=hcb84e12_1 |
|
|
39 |
- libxml2=2.9.10=h3b9e6c8_1 |
|
|
40 |
- libxslt=1.1.34=h83b36ba_0 |
|
|
41 |
- llvm-openmp=10.0.0=h28b9765_0 |
|
|
42 |
- lxml=4.6.1=py37h63b7cb6_0 |
|
|
43 |
- lz4-c=1.9.2=h0a44026_0 |
|
|
44 |
- matplotlib=3.2.2=0 |
|
|
45 |
- matplotlib-base=3.2.2=py37h5670ca0_0 |
|
|
46 |
- mkl=2019.4=233 |
|
|
47 |
- mkl-service=2.3.0=py37hfbe908c_0 |
|
|
48 |
- mkl_fft=1.1.0=py37hc64f4ea_0 |
|
|
49 |
- mkl_random=1.1.1=py37h959d312_0 |
|
|
50 |
- ncurses=6.2=h0a44026_1 |
|
|
51 |
- networkx=2.5=py_0 |
|
|
52 |
- ninja=1.9.0=py37h04f5b5a_0 |
|
|
53 |
- numpy=1.18.5=py37h1da2735_0 |
|
|
54 |
- numpy-base=1.18.5=py37h3304bdc_0 |
|
|
55 |
- olefile=0.46=py37_0 |
|
|
56 |
- openssl=1.1.1h=haf1e3a3_0 |
|
|
57 |
- pandas=1.0.5=py37h959d312_0 |
|
|
58 |
- pcre=8.44=hb1e8313_0 |
|
|
59 |
- pillow=7.2.0=py37ha54b6ba_0 |
|
|
60 |
- pip=20.1.1=py37_1 |
|
|
61 |
- pixman=0.40.0=haf1e3a3_0 |
|
|
62 |
- py-boost=1.67.0=py37h6440ff4_4 |
|
|
63 |
- pycparser=2.20=py_0 |
|
|
64 |
- pyopenssl=19.1.0=py_1 |
|
|
65 |
- pyparsing=2.4.7=py_0 |
|
|
66 |
- pysocks=1.7.1=py37_0 |
|
|
67 |
- python=3.7.7=hf48f09d_4 |
|
|
68 |
- python-dateutil=2.8.1=py_0 |
|
|
69 |
- python-wget=3.2=py_0 |
|
|
70 |
- python_abi=3.7=1_cp37m |
|
|
71 |
- pytz=2020.1=py_0 |
|
|
72 |
- rdkit=2020.03.3.0=py37h65625ec_1 |
|
|
73 |
- readline=8.0=h1de35cc_0 |
|
|
74 |
- scikit-learn=0.23.1=py37h603561c_0 |
|
|
75 |
- seaborn=0.11.0=py_0 |
|
|
76 |
- setuptools=47.3.1=py37_0 |
|
|
77 |
- six=1.15.0=py_0 |
|
|
78 |
- soupsieve=2.0.1=py_0 |
|
|
79 |
- sqlite=3.32.3=hffcf06c_0 |
|
|
80 |
- threadpoolctl=2.1.0=pyh5ca1d4c_0 |
|
|
81 |
- tk=8.6.10=hb0a8c7a_0 |
|
|
82 |
- tornado=6.0.4=py37h1de35cc_1 |
|
|
83 |
- wget=1.20.1=h051b688_0 |
|
|
84 |
- wheel=0.34.2=py37_0 |
|
|
85 |
- xlrd=1.2.0=py37_0 |
|
|
86 |
- xz=5.2.5=h1de35cc_0 |
|
|
87 |
- zlib=1.2.11=h1de35cc_3 |
|
|
88 |
- zstd=1.4.4=h1990bb4_3 |
|
|
89 |
- pip: |
|
|
90 |
- absl-py==0.9.0 |
|
|
91 |
- astunparse==1.6.3 |
|
|
92 |
- biobert-embedding==0.1.2 |
|
|
93 |
- boto3==1.14.16 |
|
|
94 |
- botocore==1.17.16 |
|
|
95 |
- cachetools==4.1.1 |
|
|
96 |
- chardet==3.0.4 |
|
|
97 |
- cssselect==1.1.0 |
|
|
98 |
- docutils==0.15.2 |
|
|
99 |
- drugdataloader==0.1 |
|
|
100 |
- future==0.18.2 |
|
|
101 |
- gast==0.3.3 |
|
|
102 |
- google-auth==1.18.0 |
|
|
103 |
- google-auth-oauthlib==0.4.1 |
|
|
104 |
- google-pasta==0.2.0 |
|
|
105 |
- graphics-py==5.0.1.post1 |
|
|
106 |
- grpcio==1.30.0 |
|
|
107 |
- h5py==2.10.0 |
|
|
108 |
- html2json==0.2.4.1 |
|
|
109 |
- icd10-cm==0.0.4 |
|
|
110 |
- importlib-metadata==1.7.0 |
|
|
111 |
- jmespath==0.10.0 |
|
|
112 |
- keras-preprocessing==1.1.2 |
|
|
113 |
- markdown==3.2.2 |
|
|
114 |
- oauthlib==3.1.0 |
|
|
115 |
- opt-einsum==3.2.1 |
|
|
116 |
- protobuf==3.12.2 |
|
|
117 |
- pyasn1==0.4.8 |
|
|
118 |
- pyasn1-modules==0.2.8 |
|
|
119 |
- pypdf2==1.26.0 |
|
|
120 |
- pyquery==1.4.1 |
|
|
121 |
- pytorch-pretrained-bert==0.6.2 |
|
|
122 |
- regex==2020.6.8 |
|
|
123 |
- requests==2.24.0 |
|
|
124 |
- requests-oauthlib==1.3.0 |
|
|
125 |
- rsa==4.6 |
|
|
126 |
- s3transfer==0.3.3 |
|
|
127 |
- scipy==1.4.1 |
|
|
128 |
- tensorboard==2.2.2 |
|
|
129 |
- tensorboard-plugin-wit==1.7.0 |
|
|
130 |
- tensorflow==2.2.0 |
|
|
131 |
- tensorflow-estimator==2.2.0 |
|
|
132 |
- termcolor==1.1.0 |
|
|
133 |
- torch==1.2.0 |
|
|
134 |
- tqdm==4.47.0 |
|
|
135 |
- urllib3==1.25.9 |
|
|
136 |
- werkzeug==1.0.1 |
|
|
137 |
- wrapt==1.12.1 |
|
|
138 |
- zipp==3.1.0 |
|
|
139 |
|