--- a
+++ b/RadOnly/duringradUS.m
@@ -0,0 +1,117 @@
+% % This code is for implementing RT 
+% % Radiation therapy first and then Chemotherapy 
+% 
+% close all;
+% clear all;
+% clc;
+% 
+% % This code is for Radiation Therapy
+% 
+% t_final = 40;
+% %D = 0:1:60;
+% t = 1:0.01:t_final;
+% A = dlmread('test.txt','\t');
+% D = A(:,1);
+% 
+% x = zeros(length(t),length(D)*2);
+% r1 = 0.6:0.01:0.9;
+% 
+% for j = 1:length(r1)
+%     r = r1(j);
+%     clear x;
+% for i = 1:length(D)
+%     i
+%     x(:,2*i-1:2*i) = ode4(@sys_ndRadUS,t,[1;0],D(i),r); 
+%     PMCells_after_Saturation(i) = x(end,2*i);
+%     ERR_thyroid(i) = x(end,2*i);  %  
+% end
+% 
+% Ncells_EndofRad = x(end,1*i);
+% PMcells_EndofRad = x(end,2*i);
+% 
+% figure(1)
+% hold on
+% plot(D,1+ERR_thyroid)
+% 
+% %plot(D,PMCells_after_Saturation)
+% 
+% %------- Thyroid ERR data due to HL from Shuryak--------% 
+% 
+% A = dlmread('test.txt','\t');
+% 
+% x = A(:,1);
+% y = A(:,2);
+% 
+% U = dlmread('testU.txt');
+% L = dlmread('testL.txt');
+% 
+% U1 = U-y;
+% L1 = y-L;
+% 
+% errorbar(x,y,L1,U1,'bo')
+% hold off
+% 
+% Y1 = PMCells_after_Saturation;
+% Y2 = A(:,2)';
+% E = (Y1-Y2).^2;
+% E1(j) = sqrt(sum(E)/length(Y1))
+% 
+% end
+% 
+% figure
+% plot(r1,E1)
+
+
+% This code is for implementing RT 
+% Radiation therapy first and then Chemotherapy 
+
+close all;
+clear all;
+clc;
+
+% This code is for Radiation Therapy
+
+t_final = 40;
+D = 0:1:60;
+t = 1:0.01:t_final;
+%A = dlmread('test.txt','\t');
+%D = A(:,1);
+
+x = zeros(length(t),length(D)*2);
+for i = 1:length(D)
+    i
+    x(:,2*i-1:2*i) = ode4(@sys_ndRadUS,t,[1;0],D(i)); 
+    PMCells_after_Saturation(i) = x(end,2*i);
+    ERR_thyroid(i) = x(end,2*i);  
+end
+
+Ncells_EndofRad = x(end,1*i);
+PMcells_EndofRad = x(end,2*i);
+
+figure(1)
+hold on
+plot(D,1+ERR_thyroid)
+
+%plot(D,PMCells_after_Saturation)
+
+%------- Thyroid ERR data --------% 
+
+A = dlmread('test.txt','\t');
+
+x = A(:,1);
+y = A(:,2);
+
+U = dlmread('testU.txt');
+L = dlmread('testL.txt');
+
+U1 = U-y;
+L1 = y-L;
+
+errorbar(x,y,L1,U1,'bo')
+hold off
+
+%Y1 = PMCells_after_Saturation;
+%Y2 = A(:,2)';
+%E = (Y1-Y2).^2;
+%E1(j) = sum(E)/length(Y1)
+