113 lines (97 with data), 2.0 kB

% Nordic data
 
close all;
clear all;
clc;

A = [0.687949248	2.148677356	2.954049414	1.522276868
5.68911329	12.62593487	33.56560836	7.704216745
19.25013823	12.64616011	33.40671653	7.724441987
46.95384571	11.1662253	32.91127084	6.691936094
];
t_final = 40;
%D = 0:1:60;
t = 1:0.01:t_final;
D = A(:,1);

x = zeros(length(t),length(D)*2);
r1 = 0.6:0.01:0.9;

for j = 1:length(r1)
    r = r1(j);
    clear x;
for i = 1:length(D)
    i
    x(:,2*i-1:2*i) = ode4(@sys_ndRadNordic,t,[1;0],D(i),r); 
    PMCells_after_Saturation(i) = x(end,2*i);
    ERR_thyroid(i) = x(end,2*i);  %  
end

Ncells_EndofRad = x(end,1*i);
PMcells_EndofRad = x(end,2*i);

figure(1)
hold on
plot(D,ERR_thyroid)

%------- Thyroid ERR data due to HL from Shuryak--------% 

x = A(:,1);
y = A(:,2);

U = A(:,3);
L = A(:,4);

U1 = U-y;
L1 = y-L;

errorbar(x,y,L1,U1,'bo')
hold off

Y1 = PMCells_after_Saturation;
Y2 = A(:,2)';
E = (Y1-Y2).^2;
E1(j) = sqrt(sum(E)/length(Y1))

end

figure
plot(r1,E1)
% 

% % This code is for implementing RT 
% % Radiation therapy first and then Chemotherapy 
% 
% close all;
% clear all;
% clc;
% 
% A = [0.687949248	2.148677356	2.954049414	1.522276868
% 5.68911329	12.62593487	33.56560836	7.704216745
% 19.25013823	12.64616011	33.40671653	7.724441987
% 46.95384571	11.1662253	32.91127084	6.691936094
% ];
% t_final = 40;
% D = 0:1:60;
% t = 1:0.01:t_final;
% 
% x = zeros(length(t),length(D)*2);
% for i = 1:length(D)
%     i
%     x(:,2*i-1:2*i) = ode4(@sys_ndRadLESG,t,[1;0],D(i)); 
%     PMCells_after_Saturation(i) = x(end,2*i);
%     ERR_thyroid(i) = x(end,2*i);  
% end
% 
% Ncells_EndofRad = x(end,1*i);
% PMcells_EndofRad = x(end,2*i);
% 
% figure(1)
% hold on
% plot(D,ERR_thyroid)
% 
% %plot(D,PMCells_after_Saturation)
% 
% %------- Thyroid ERR data --------% 
% x = A(:,1);
% y = A(:,2);
% 
% U = A(:,3);
% L = A(:,4);
% 
% U1 = U-y;
% L1 = y-L;
% 
% errorbar(x,y,L1,U1,'bo')
% hold off
% 
% %Y1 = PMCells_after_Saturation;
% %Y2 = A(:,2)';
% %E = (Y1-Y2).^2;
% %E1(j) = sum(E)/length(Y1)
%