Subject is unable or unwilling to participate a study related procedure Unable or unwilling to discontinue use of any drug known to be a strong or moderate inhibitor or inducer of CYP3A4 (prohibited inducers and inhibitors must be discontinued within 2 weeks prior to first dose of study drug); unable or unwilling to discontinue use of any proton pump inhibitor Patients must not be pregnant or breast feeding, or unable or unwilling to use proper contraception during the study and up to 3 months following study completion (for treatment phase) Patients not able or unwilling to travel for proton therapy Unable/unwilling to undergo bone marrow sampling Subjects must be unwilling or unable to tolerate other non-study systemic chemotherapy. Patient is unwilling or unable to comply with study procedures, or is planning to take vacation for 7 or more consecutive days during the treatment phase of the study without prior consent from the medical monitor For female patients of childbearing potential (defined as having had a menstrual period within the past 12 months): a positive serum pregnancy test (?-human chorionic gonadotropin [? HCG]) within 7 days prior to enrollment; or unwilling or unable to undergo hormonal suppression to avoid menstruation during treatment; or if breastfeeding, unwilling or unable to stop breastfeeding while on study treatment. Patients unable or unwilling to adhere to the study assessment schedule. Patients who are unwilling or unable to undergo an apheresis for production of their vaccine Patients unable or unwilling to return to the transplant center for their assigned treatments. Patients unable or unwilling to undergo a biopsy for research during the screening period, 2-3 weeks into the course of therapy and at the time of progression Subjects must not be pregnant or unwilling to undergo pregnancy screening Unable or unwilling to follow post-therapy radiation protection procedures Unwilling or unable to discontinue disallowed disease-modifying antirheumatic drugs (DMARDs) for treatment of SSc prior to mobilization Patient is unwilling or unable to follow the study schedule for any reason Unable or unwilling to communicate or cooperate with the Investigator or follow the protocol for any reason Patients who, in the investigator's judgment, are unwilling or unable to consent to and return for recommended post-treatment scans as outlined in this study Unable or unwilling to communicate or cooperate with the Investigator or follow the protocol for any reason Unable or unwilling to swallow the complete daily dose of ARQ 751 Patients at risk of pregnancy who are unwilling or unable to take effective contraception before rapamycin therapy, during therapy, and for 12 weeks after discontinuation of therapy Unable or unwilling to tolerate an intracranial MRI Subject is unable or unwilling to discontinue use of prohibited medications Subject is unable or unwilling to participate in a study related procedure Patient is unwilling or unable to follow the study schedule for any reason Unwilling or unable to stop oral supplemental vitamin D Unable to attend sessions Unable or unwilling to swallow ARQ 092 or anastrozole or comply with chemotherapy regimen For female patients of childbearing potential (i.e., have had a menstrual period within the past 12 months): unwilling or unable to undergo hormonal suppression to avoid menstruation during treatment. Unable or unwilling to discontinue (and substitute if necessary) use of prohibited drugs for at least 14 days (fruits and juices for at least 7 days) prior to day 1 of FOLFIRI + bevacizumab initiation Unwilling or unable to complete study diary Unable or unwilling to undergo a 7 day washout period if currently being treated with deferiprone or deferoxamine or deferasirox; Breast-feeding or pregnant women, or patients for whom there is a risk of conception and who are unable or unwilling to use appropriate contraception (for male and female patients up to 4 months after end of ibrutinib.) Unable or unwilling to adhere to the study-specified procedures and restrictions Patients of childbearing age who are unwilling to practice contraception or other means of avoiding pregnancy Unable or unwilling to undergo protocol required thromboembolism prophylaxis(for Cohort C, this will be only for the subjects who have a history of VTE) Is unable or unwilling to take folic acid or vitamin B12 supplementation. Participants unwilling or unable to have a central venous catheter placed will not be excluded from receiving single-agent Doxil Unwilling or unable to complete subject reported outcome assessments without assistance or with minimal assistance from trained site personnel and/or caregiver. Is unable or unwilling to participate in a study related procedure Patient is unwilling or unable to follow the study schedule for any reason Male subjects unable or unwilling to use adequate contraception methods from study start to 30 days after the last dose of protocol therapy Unable or unwilling to undergo antithrombotic prophylaxis Unwilling to use contraceptives while on study if relevant to patient Unable or unwilling to swallow the complete daily dose of ARQ 087 Male subjects unable or unwilling to use adequate contraception methods from study start to one year after the last dose of protocol therapy Male subjects unable or unwilling to use adequate contraception methods from study start to one year after the last dose of protocol therapy Male subjects unable or unwilling to use adequate contraception methods from study start to one year after the last dose of protocol therapy Unable or unwilling to discontinue use of prohibited medications for at least 7 days prior to the first dose of study drug and for the duration of the study Sexually active individuals capable of becoming pregnant who are unable or unwilling to use effective form(s) of contraception during time enrolled on study and for 1 year post-transplant Patients unable or unwilling to discontinue (and substitute if necessary) use of prohibited drugs for at least 30 days prior to day 1 of FOLFIRI initiation Patient is unable or unwilling to discontinue predefined prohibited medications listed in the protocol for 4 weeks of a drug (whichever is longer) prior to Visit 1 and for the duration of the study EXPANSION COHORT ONLY: Patient is unable or unwilling to discontinue predefined prohibited medications listed in the protocol for 4 weeks of a drug (whichever is longer) prior to visit 1 and for the duration of the study Unable or unwilling to adhere to the study-specified procedures and restrictions Is unwilling or unable to abide by the requirements of the study. Unable or unwilling to take folic acid or vitamin B12 Male subjects unable or unwilling to use adequate contraception methods from study start to one year after the last dose of protocol therapy Subjects who are unable or unwilling to comply with all study requirements for clinical visits, examinations, tests, and procedures. Woman of childbearing potential unwilling or unable to use adequate contraception Unwilling or unable to take oral medication Unable to obtain diagnostic imaging Men unable or unwilling to employ 2 forms of highly effective contraception throughout the study and for 8 weeks after the end of study treatment In Part 2, unable or unwilling to consent to provision of tumor tissue for GR assay Is unwilling or unable to comply with study procedures, or is planning to take a vacation for 7 or more consecutive days during the treatment phase of the study Patients currently taking statins who are unwilling or unable to refrain from using statins 24 hours before, the day of, and 24 hours after each MLN4924 administration Patients who are unwilling or unable to refrain from using hydroxymethylglutaryl coenzyme A (HMG CoA) reductase inhibitors (statins) starting 5 days before the initial study drug administration and throughout the study will not be permitted to enroll Patients unwilling to use contraceptives while on study Patients who are unable to take oral drugs Unwilling or unable to have a central venous catheter Subjects unable or unwilling to undergo antithrombotic prophylactic treatment Patients unwilling to have a central catheter The participant is unwilling or unable to take premedications (folic acid, vitamin B12, or corticosteroids) required by the pemetrexed label. The subject is unable or unwilling to stop taking vitamins, herbal remedy, or nonprescription medications Patients who are unable or unwilling to undergo antithrombotic therapy. For female subjects of childbearing potential (i.e., have had a menstrual period within the past 12 months): a positive serum pregnancy test (?-human chorionic gonadotropin) within 7 days prior to enrollment; or unwilling or unable to undergo hormonal suppression to avoid menstruation during treatment Unable or unwilling to discontinue use of prohibited medications for at least 28 days prior to the first dose of topotecan/pazopanib and for the duration of the study Are unable to catheterize due to a urethral stricture disease, Individuals that are unwilling or unable to attend study visits or are planning to move out of a study site coverage area during the subject’s anticipated participation in the study Unwilling or unable to participate in the study Unwilling or unable to participate in group 3RP sessions delivered via the Partners Telehealth videoconferencing software Unwilling or unable to participate in the study Unwilling or unable to participate in the study Unwilling or unable to participate in the study Unable or unwilling to discontinue consuming soy-based food or supplements while participating in this study Unwilling to undergo phlebotomy Unwilling or unable to stop supplemental sex hormone therapy (estrogen, progesterone, and/or testosterone preparations) Are unable or unwilling to discontinue anxiolytics within 4 hours of education sessions Subjects who are unable or unwilling to discontinue use of prohibited medications Unable to cooperate with research procedures Unwilling to receive acupuncture or unable to travel for treatments Unwilling or unable to participate in the study Physically unable or unwilling to participate in recommended exercise programs or travel to UCSF on a monthly basis Patient or family is unable or unwilling to self/home administer subcutaneous experimental drug; study nurse or physician will train individuals on proper administration techniques Be unable or unwilling to discontinue anxiolytic medication within 4 hours of intervention sessions Is unwilling or unable to agree to swish and spit the study oral rinse three times per day during the study period Those who are unable to understand Korean Unable or unwilling to adhere to study-specified procedures Unable or unwilling to adhere to a carbohydrate-restricted dietary intervention Unable to stand without assistance Unable to hold a breath Patients on testosterone replacement therapy who are unwilling to discontinue Patient under guardianship and/or unable or unwilling to cooperate with the requirements of this trial Patients unwilling to undergo serial non-invasive imaging Patients unwilling to undergo craniotomy Unable to read for comprehension or completion of study documents Are unwilling or unable to participate in, or do not have tissue adequate for participation in the biomarker analyses in the study. Unwilling or unable to participate in the study Unwilling or unable to receive home health care Unable to respond to text messages and questions or unable download the study app Fox Chase Cancer Partners sites who do not agree to chart audit procedures or providers are unable or unwilling to participate in the educational initiative Unable to fast due to medical reason such as pregnancy Unable to read for comprehension or completion of study documents. Men whose partner is unwilling or unable to avoid pregnancy Lactose-intolerance or are unwilling/unable to consume the protocol-specified standardized high-fat, high-calorie breakfast.