--- a
+++ b/scripts/ctmetamaptest.java
@@ -0,0 +1,73 @@
+import java.util.*;
+import java.io.*;
+import java.net.*;
+import gov.nih.nlm.nls.skr.*;
+public class ctmetamaptest {
+  static GenericObject gj = new GenericObject();
+  public static void main(String[] args) throws Exception {
+    Scanner in = new Scanner(new File("example_ct.csv"));
+    PrintWriter out = new PrintWriter(new File("sample_output_full.csv"));
+    String useless = in.nextLine();
+    while(in.hasNext()) {
+      String[] terms = in.nextLine().split(",");
+      String source = getURLSource(terms[2]);
+      int index = source.indexOf("display_order");
+      if (index > 0) {
+        ArrayList<Integer> indices = new ArrayList<Integer>();
+        ArrayList<Integer> startinds = new ArrayList<Integer>();
+        ArrayList<Integer> endinds = new ArrayList<Integer>();
+        while (index > 0) {
+          indices.add(index);
+          startinds.add(source.indexOf("description", index));
+          endinds.add(source.indexOf("}", index));
+          index = source.indexOf("display_order", index+1);
+        }
+        ArrayList<String> strings = new ArrayList<String>();
+        for (int i = 0; i < startinds.size(); i++) strings.add(source.substring(startinds.get(i) + 14, endinds.get(i)-1));
+        out.print(terms[0] + "," + terms[1] + ",\"[");
+        for (int i = 0; i < strings.size(); i++) {
+          PrintWriter tmp = new PrintWriter(new File("input.txt"));
+          tmp.print(strings.get(i));
+          tmp.close();
+          out.print("\'" + getMetamap() + "\'");
+          if (i < strings.size() - 1) out.print(",");
+        }
+        out.println();
+      }
+    }
+    in.close();
+    out.close();
+  }
+  static String getMetamap() {
+    gj.setField("Email_Address", "neilmalur@hotmail.com");
+    gj.setFileField("UpLoad_File", "./input.txt");
+    //gj.setField("APIText", input);
+    //gj.setField("Batch_Command", "MTI -opt1L_DCMS -E");
+    gj.setField("Batch_Command", "metamap -pcI");
+    gj.setField("BatchNotes", "SKR Web API test");
+    gj.setField("SilentEmail", true);
+    return gj.handleSubmission();
+  }
+  public static String getURLSource(String url) throws IOException
+    {
+        URL urlObject = new URL(url);
+        URLConnection urlConnection = urlObject.openConnection();
+        urlConnection.setRequestProperty("User-Agent", "Mozilla/5.0 (Windows NT 6.1; WOW64) AppleWebKit/537.11 (KHTML, like Gecko) Chrome/23.0.1271.95 Safari/537.11");
+        try {
+        return toString(urlConnection.getInputStream());}catch(Exception e) {return "";}
+    }
+  private static String toString(InputStream inputStream) throws IOException
+    {
+        try (BufferedReader bufferedReader = new BufferedReader(new InputStreamReader(inputStream, "UTF-8")))
+        {
+            String inputLine;
+            StringBuilder stringBuilder = new StringBuilder();
+            while ((inputLine = bufferedReader.readLine()) != null)
+            {
+                stringBuilder.append(inputLine);
+            }
+
+            return stringBuilder.toString();
+        }
+    }
+}