[748a59]: / parsed_data / firstpass_NLPparsed / NCI-2016-01346.xmi

Download this file

1 lines (1 with data), 19.5 kB

1
<?xml version="1.0" encoding="UTF-8"?><xmi:XMI xmlns:tcas="http:///uima/tcas.ecore" xmlns:xmi="http://www.omg.org/XMI" xmlns:cas="http:///uima/cas.ecore" xmlns:bmi="http:///edu/buffalo/bmi.ecore" xmi:version="2.0"><cas:NULL xmi:id="0"/><tcas:DocumentAnnotation xmi:id="8" sofa="1" begin="0" end="394" language="x-unspecified"/><bmi:JJToken xmi:id="13" sofa="1" begin="0" end="5" Lemma="human" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="69" sofa="1" begin="35" end="43" Lemma="positive" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="101" sofa="1" begin="68" end="82" Lemma="antiretroviral" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="125" sofa="1" begin="95" end="105" Lemma="ineligible" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="141" sofa="1" begin="107" end="118" Lemma="appropriate" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="213" sofa="1" begin="180" end="194" Lemma="antiretroviral" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="253" sofa="1" begin="219" end="231" Lemma="hiv-positive" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="277" sofa="1" begin="246" end="258" Lemma="undetectable" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="285" sofa="1" begin="259" end="264" Lemma="viral" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="381" sofa="1" begin="308" end="322" Lemma="antiretroviral" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="453" sofa="1" begin="372" end="381" Lemma="principal" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="21" sofa="1" begin="6" end="22" Lemma="immunodeficiency" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="29" sofa="1" begin="23" end="28" Lemma="virus" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="45" sofa="1" begin="30" end="33" Lemma="hiv" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="93" sofa="1" begin="56" end="67" Lemma="combination" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="109" sofa="1" begin="83" end="90" Lemma="therapy" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="205" sofa="1" begin="168" end="179" Lemma="combination" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="221" sofa="1" begin="195" end="202" Lemma="therapy" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="309" sofa="1" begin="275" end="278" Lemma="cd4" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="389" sofa="1" begin="323" end="330" Lemma="therapy" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="461" sofa="1" begin="382" end="394" Lemma="investigator" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="37" sofa="1" begin="29" end="30" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="53" sofa="1" begin="33" end="34" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="61" sofa="1" begin="34" end="35" Lemma="-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="133" sofa="1" begin="105" end="106" Lemma=";" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="245" sofa="1" begin="217" end="218" Lemma=";" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="341" sofa="1" begin="291" end="292" Lemma="," PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="77" sofa="1" begin="44" end="52" Lemma="patient" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="149" sofa="1" begin="119" end="126" Lemma="study" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="189" sofa="1" begin="149" end="157" Lemma="patient" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="261" sofa="1" begin="232" end="240" Lemma="patient" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="293" sofa="1" begin="265" end="270" Lemma="load" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="317" sofa="1" begin="279" end="285" Lemma="count" PossibleAbbreviation="false"/><bmi:INToken xmi:id="85" sofa="1" begin="53" end="55" Lemma="on" PossibleAbbreviation="false"/><bmi:INToken xmi:id="181" sofa="1" begin="146" end="148" Lemma="in" PossibleAbbreviation="false"/><bmi:INToken xmi:id="269" sofa="1" begin="241" end="245" Lemma="with" PossibleAbbreviation="false"/><bmi:INToken xmi:id="365" sofa="1" begin="301" end="303" Lemma="on" PossibleAbbreviation="false"/><bmi:INToken xmi:id="421" sofa="1" begin="346" end="351" Lemma="after" PossibleAbbreviation="false"/><bmi:INToken xmi:id="437" sofa="1" begin="363" end="367" Lemma="with" PossibleAbbreviation="false"/><bmi:VBPToken xmi:id="117" sofa="1" begin="91" end="94" Lemma="be" PossibleAbbreviation="false"/><bmi:MDToken xmi:id="157" sofa="1" begin="127" end="131" Lemma="will" PossibleAbbreviation="false"/><bmi:MDToken xmi:id="397" sofa="1" begin="331" end="334" Lemma="may" PossibleAbbreviation="false"/><bmi:VBToken xmi:id="165" sofa="1" begin="132" end="134" Lemma="be" PossibleAbbreviation="false"/><bmi:VBToken xmi:id="405" sofa="1" begin="335" end="337" Lemma="be" PossibleAbbreviation="false"/><bmi:VBNToken xmi:id="173" sofa="1" begin="135" end="145" Lemma="undertake" PossibleAbbreviation="false"/><bmi:VBNToken xmi:id="237" sofa="1" begin="208" end="217" Lemma="indicate" PossibleAbbreviation="false"/><bmi:VBNToken xmi:id="413" sofa="1" begin="338" end="345" Lemma="allow" PossibleAbbreviation="false"/><bmi:VBGToken xmi:id="197" sofa="1" begin="158" end="167" Lemma="receive" PossibleAbbreviation="false"/><bmi:VBGToken xmi:id="429" sofa="1" begin="352" end="362" Lemma="discuss" PossibleAbbreviation="false"/><bmi:WRBToken xmi:id="229" sofa="1" begin="203" end="207" Lemma="when" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="301" sofa="1" begin="271" end="274" Lemma="and" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="349" sofa="1" begin="293" end="296" Lemma="and" PossibleAbbreviation="false"/><bmi:JJRToken xmi:id="325" sofa="1" begin="286" end="287" Lemma="&gt;" PossibleAbbreviation="false"/><bmi:CDToken xmi:id="333" sofa="1" begin="288" end="291" Lemma="300" PossibleAbbreviation="false"/><bmi:RBToken xmi:id="357" sofa="1" begin="297" end="300" Lemma="not" PossibleAbbreviation="false"/><bmi:DTToken xmi:id="373" sofa="1" begin="304" end="307" Lemma="any" PossibleAbbreviation="false"/><bmi:DTToken xmi:id="445" sofa="1" begin="368" end="371" Lemma="the" PossibleAbbreviation="false"/><bmi:Sentence xmi:id="469" sofa="1" begin="0" end="394"/><bmi:Dependency xmi:id="489" sofa="1" begin="0" end="28" Governor="29" Dependent="13" Relation="amod"/><bmi:Dependency xmi:id="512" sofa="1" begin="6" end="28" Governor="29" Dependent="21" Relation="compound"/><bmi:Dependency xmi:id="788" sofa="1" begin="23" end="105" Governor="125" Dependent="29" Relation="nsubj"/><bmi:Dependency xmi:id="581" sofa="1" begin="23" end="52" Governor="29" Dependent="77" Relation="dep"/><bmi:Dependency xmi:id="558" sofa="1" begin="23" end="35" Governor="29" Dependent="61" Relation="punct"/><bmi:Dependency xmi:id="535" sofa="1" begin="23" end="33" Governor="29" Dependent="45" Relation="appos"/><bmi:Dependency xmi:id="604" sofa="1" begin="29" end="33" Governor="45" Dependent="37" Relation="punct"/><bmi:Dependency xmi:id="627" sofa="1" begin="30" end="34" Governor="45" Dependent="53" Relation="punct"/><bmi:Dependency xmi:id="650" sofa="1" begin="35" end="52" Governor="77" Dependent="69" Relation="amod"/><bmi:Dependency xmi:id="673" sofa="1" begin="44" end="90" Governor="77" Dependent="109" Relation="nmod"/><bmi:Dependency xmi:id="696" sofa="1" begin="53" end="90" Governor="109" Dependent="85" Relation="case"/><bmi:Dependency xmi:id="719" sofa="1" begin="56" end="90" Governor="109" Dependent="93" Relation="compound"/><bmi:Dependency xmi:id="742" sofa="1" begin="68" end="90" Governor="109" Dependent="101" Relation="amod"/><bmi:Dependency xmi:id="834" sofa="1" begin="91" end="105" Governor="125" Dependent="117" Relation="cop"/><bmi:Dependency xmi:id="811" sofa="1" begin="95" end="145" Governor="125" Dependent="173" Relation="parataxis"/><bmi:Dependency xmi:id="765" sofa="1" begin="95" end="106" Governor="125" Dependent="133" Relation="punct"/><bmi:Dependency xmi:id="857" sofa="1" begin="107" end="126" Governor="149" Dependent="141" Relation="amod"/><bmi:Dependency xmi:id="880" sofa="1" begin="119" end="145" Governor="173" Dependent="149" Relation="nsubjpass"/><bmi:Dependency xmi:id="903" sofa="1" begin="127" end="145" Governor="173" Dependent="157" Relation="aux"/><bmi:Dependency xmi:id="926" sofa="1" begin="132" end="145" Governor="173" Dependent="165" Relation="auxpass"/><bmi:Dependency xmi:id="972" sofa="1" begin="135" end="217" Governor="173" Dependent="237" Relation="dep"/><bmi:Dependency xmi:id="949" sofa="1" begin="135" end="157" Governor="173" Dependent="189" Relation="nmod"/><bmi:Dependency xmi:id="995" sofa="1" begin="146" end="157" Governor="189" Dependent="181" Relation="case"/><bmi:Dependency xmi:id="1018" sofa="1" begin="149" end="167" Governor="189" Dependent="197" Relation="acl"/><bmi:Dependency xmi:id="1041" sofa="1" begin="158" end="202" Governor="197" Dependent="221" Relation="dobj"/><bmi:Dependency xmi:id="1064" sofa="1" begin="168" end="202" Governor="221" Dependent="205" Relation="compound"/><bmi:Dependency xmi:id="1087" sofa="1" begin="180" end="202" Governor="221" Dependent="213" Relation="amod"/><bmi:Dependency xmi:id="1133" sofa="1" begin="203" end="217" Governor="237" Dependent="229" Relation="advmod"/><bmi:Dependency xmi:id="1110" sofa="1" begin="208" end="345" Governor="237" Dependent="413" Relation="parataxis"/><bmi:Dependency xmi:id="1156" sofa="1" begin="208" end="218" Governor="237" Dependent="245" Relation="punct"/><bmi:Dependency xmi:id="1225" sofa="1" begin="219" end="240" Governor="261" Dependent="253" Relation="amod"/><bmi:Dependency xmi:id="1616" sofa="1" begin="232" end="345" Governor="413" Dependent="261" Relation="nsubjpass"/><bmi:Dependency xmi:id="1202" sofa="1" begin="232" end="285" Governor="261" Dependent="317" Relation="nmod"/><bmi:Dependency xmi:id="1179" sofa="1" begin="232" end="270" Governor="261" Dependent="293" Relation="nmod"/><bmi:Dependency xmi:id="1248" sofa="1" begin="241" end="270" Governor="293" Dependent="269" Relation="case"/><bmi:Dependency xmi:id="1271" sofa="1" begin="246" end="270" Governor="293" Dependent="277" Relation="amod"/><bmi:Dependency xmi:id="1294" sofa="1" begin="259" end="270" Governor="293" Dependent="285" Relation="amod"/><bmi:Dependency xmi:id="1340" sofa="1" begin="265" end="285" Governor="293" Dependent="317" Relation="conj"/><bmi:Dependency xmi:id="1317" sofa="1" begin="265" end="274" Governor="293" Dependent="301" Relation="cc"/><bmi:Dependency xmi:id="1386" sofa="1" begin="275" end="285" Governor="317" Dependent="309" Relation="compound"/><bmi:Dependency xmi:id="1363" sofa="1" begin="279" end="330" Governor="317" Dependent="389" Relation="dep"/><bmi:Dependency xmi:id="1409" sofa="1" begin="279" end="291" Governor="317" Dependent="333" Relation="dep"/><bmi:Dependency xmi:id="1455" sofa="1" begin="286" end="291" Governor="333" Dependent="325" Relation="advmod"/><bmi:Dependency xmi:id="1432" sofa="1" begin="288" end="330" Governor="333" Dependent="389" Relation="conj"/><bmi:Dependency xmi:id="1501" sofa="1" begin="288" end="296" Governor="333" Dependent="349" Relation="cc"/><bmi:Dependency xmi:id="1478" sofa="1" begin="288" end="292" Governor="333" Dependent="341" Relation="punct"/><bmi:Dependency xmi:id="1524" sofa="1" begin="297" end="330" Governor="389" Dependent="357" Relation="neg"/><bmi:Dependency xmi:id="1547" sofa="1" begin="301" end="330" Governor="389" Dependent="365" Relation="case"/><bmi:Dependency xmi:id="1570" sofa="1" begin="304" end="330" Governor="389" Dependent="373" Relation="det"/><bmi:Dependency xmi:id="1593" sofa="1" begin="308" end="330" Governor="389" Dependent="381" Relation="amod"/><bmi:Dependency xmi:id="1639" sofa="1" begin="331" end="345" Governor="413" Dependent="397" Relation="aux"/><bmi:Dependency xmi:id="1662" sofa="1" begin="335" end="345" Governor="413" Dependent="405" Relation="auxpass"/><bmi:Dependency xmi:id="1685" sofa="1" begin="338" end="362" Governor="413" Dependent="429" Relation="advcl"/><bmi:Dependency xmi:id="1708" sofa="1" begin="346" end="362" Governor="429" Dependent="421" Relation="mark"/><bmi:Dependency xmi:id="1731" sofa="1" begin="352" end="394" Governor="429" Dependent="461" Relation="nmod"/><bmi:Dependency xmi:id="1754" sofa="1" begin="363" end="394" Governor="461" Dependent="437" Relation="case"/><bmi:Dependency xmi:id="1777" sofa="1" begin="368" end="394" Governor="461" Dependent="445" Relation="det"/><bmi:Dependency xmi:id="1800" sofa="1" begin="372" end="394" Governor="461" Dependent="453" Relation="amod"/><bmi:BioMedicalEntity xmi:id="1807" sofa="1" begin="0" end="28" Terminology="SNOMED" TerminologyIdentifier="230598008####19030005####89293008" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1816" sofa="1" begin="30" end="33" Terminology="SNOMED" TerminologyIdentifier="315124004####226164007####386708005####407515008####181681008####186803007" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1825" sofa="1" begin="35" end="52" Terminology="SNOMED" TerminologyIdentifier="250424006####250423000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1834" sofa="1" begin="56" end="67" Terminology="SNOMED" TerminologyIdentifier="89780004####228166004" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1843" sofa="1" begin="83" end="90" Terminology="SNOMED" TerminologyIdentifier="170270002####165119001####170297009####360270004####80546007####271421005####169439004####70536003####168523002####129445006####280952003####19030005####12484000####84478008####170184004####170288005####168524008####419815003####170175004####18027006####169438007####69960004####169291001####25162000####398074008####5304008####108290001####170105000####226048001####170112009####243126005####170157000####277132007####273360000####170130002####67101007####413454004####168525009####225738002####169437002####275923005####170308006####416118004####170148006####243931006####263903005####399315003####165127005####170121005####47545007####276239002####391023009####170261000####170139001####266717002####255688002####361226000####408485004####182657004####170166001####170279001" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1852" sofa="1" begin="91" end="94" Terminology="SNOMED" TerminologyIdentifier="168836005####36070007####258259005####27814009####301183007####159083000####256871003####116680003####88014003####60234000####149016008####58533008####118586006####78494001####263680009####226882008####100832001####160573003####67487000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1861" sofa="1" begin="107" end="118" Terminology="SNOMED" TerminologyIdentifier="185554006####185544007" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1870" sofa="1" begin="119" end="126" Terminology="SNOMED" TerminologyIdentifier="5091004####224699009" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1879" sofa="1" begin="132" end="134" Terminology="SNOMED" TerminologyIdentifier="168836005####36070007####258259005####27814009####301183007####159083000####256871003####116680003####88014003####60234000####149016008####58533008####118586006####78494001####263680009####226882008####100832001####160573003####67487000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1888" sofa="1" begin="149" end="157" Terminology="SNOMED" TerminologyIdentifier="360160009####271300009####253620009####45341000####282119004####91251008####396451008####424966008####74036000####87385003####12026006####437871001####41778007####260809006####36682004####84847000####371883000####116154003####103324002" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1897" sofa="1" begin="168" end="179" Terminology="SNOMED" TerminologyIdentifier="89780004####228166004" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1906" sofa="1" begin="195" end="217" Terminology="SNOMED" TerminologyIdentifier="183964008####152190007" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1915" sofa="1" begin="219" end="231" Terminology="SNOMED" TerminologyIdentifier="19030005" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1924" sofa="1" begin="232" end="240" Terminology="SNOMED" TerminologyIdentifier="360160009####271300009####253620009####45341000####282119004####91251008####396451008####424966008####74036000####87385003####12026006####437871001####41778007####260809006####36682004####84847000####371883000####116154003####103324002" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1933" sofa="1" begin="246" end="258" Terminology="SNOMED" TerminologyIdentifier="260415000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1942" sofa="1" begin="259" end="270" Terminology="SNOMED" TerminologyIdentifier="315124004####168210005####395058002" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1951" sofa="1" begin="275" end="285" Terminology="SNOMED" TerminologyIdentifier="313938009" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1960" sofa="1" begin="286" end="287" Terminology="SNOMED" TerminologyIdentifier="276140008####264706000####264705001####264708004" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1969" sofa="1" begin="323" end="330" Terminology="SNOMED" TerminologyIdentifier="170270002####165119001####170297009####360270004####80546007####271421005####169439004####70536003####168523002####129445006####280952003####19030005####12484000####84478008####170184004####170288005####168524008####419815003####170175004####18027006####169438007####69960004####169291001####25162000####398074008####5304008####108290001####170105000####226048001####170112009####243126005####170157000####277132007####273360000####170130002####67101007####413454004####168525009####225738002####169437002####275923005####170308006####416118004####170148006####243931006####263903005####399315003####165127005####170121005####47545007####276239002####391023009####170261000####170139001####266717002####255688002####361226000####408485004####182657004####170166001####170279001" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1978" sofa="1" begin="335" end="337" Terminology="SNOMED" TerminologyIdentifier="168836005####36070007####258259005####27814009####301183007####159083000####256871003####116680003####88014003####60234000####149016008####58533008####118586006####78494001####263680009####226882008####100832001####160573003####67487000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1987" sofa="1" begin="372" end="381" Terminology="SNOMED" TerminologyIdentifier="63161005####302311007" Certainty="affirmed"/><cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="Human immunodeficiency virus (HIV)-positive patients on combination antiretroviral therapy are ineligible; appropriate studies will be undertaken in patients receiving combination antiretroviral therapy when indicated; HIV-positive patients with undetectable viral loads and CD4 counts &gt; 300, and not on any antiretroviral therapy may be allowed after discussing with the principal investigator"/><cas:View sofa="1" members="8 13 69 101 125 141 213 253 277 285 381 453 21 29 45 93 109 205 221 309 389 461 37 53 61 133 245 341 77 149 189 261 293 317 85 181 269 365 421 437 117 157 397 165 405 173 237 413 197 429 229 301 349 325 333 357 373 445 469 489 512 788 581 558 535 604 627 650 673 696 719 742 834 811 765 857 880 903 926 972 949 995 1018 1041 1064 1087 1133 1110 1156 1225 1616 1202 1179 1248 1271 1294 1340 1317 1386 1363 1409 1455 1432 1501 1478 1524 1547 1570 1593 1639 1662 1685 1708 1731 1754 1777 1800 1807 1816 1825 1834 1843 1852 1861 1870 1879 1888 1897 1906 1915 1924 1933 1942 1951 1960 1969 1978 1987"/></xmi:XMI>