[748a59]: / parsed_data / firstpass_NLPparsed / NCI-2015-00260.xmi

Download this file

1 lines (1 with data), 12.6 kB

1
<?xml version="1.0" encoding="UTF-8"?><xmi:XMI xmlns:tcas="http:///uima/tcas.ecore" xmlns:xmi="http://www.omg.org/XMI" xmlns:cas="http:///uima/cas.ecore" xmlns:bmi="http:///edu/buffalo/bmi.ecore" xmi:version="2.0"><cas:NULL xmi:id="0"/><tcas:DocumentAnnotation xmi:id="8" sofa="1" begin="0" end="189" language="x-unspecified"/><bmi:DTToken xmi:id="13" sofa="1" begin="0" end="2" Lemma="no" PossibleAbbreviation="false"/><bmi:DTToken xmi:id="37" sofa="1" begin="14" end="17" Lemma="the" PossibleAbbreviation="false"/><bmi:DTToken xmi:id="157" sofa="1" begin="97" end="100" Lemma="the" PossibleAbbreviation="false"/><bmi:DTToken xmi:id="269" sofa="1" begin="163" end="165" Lemma="no" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="21" sofa="1" begin="3" end="10" Lemma="history" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="45" sofa="1" begin="18" end="27" Lemma="following" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="93" sofa="1" begin="52" end="68" Lemma="immunodeficiency" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="101" sofa="1" begin="69" end="74" Lemma="virus" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="117" sofa="1" begin="76" end="79" Lemma="hiv" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="189" sofa="1" begin="119" end="126" Lemma="cluster" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="205" sofa="1" begin="130" end="145" Lemma="differentiation" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="221" sofa="1" begin="147" end="149" Lemma="cd" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="293" sofa="1" begin="183" end="187" Lemma="load" PossibleAbbreviation="false"/><bmi:INToken xmi:id="29" sofa="1" begin="11" end="13" Lemma="of" PossibleAbbreviation="false"/><bmi:INToken xmi:id="77" sofa="1" begin="41" end="45" Lemma="with" PossibleAbbreviation="false"/><bmi:INToken xmi:id="149" sofa="1" begin="94" end="96" Lemma="if" PossibleAbbreviation="false"/><bmi:INToken xmi:id="197" sofa="1" begin="127" end="129" Lemma="of" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="53" sofa="1" begin="27" end="28" Lemma=":" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="109" sofa="1" begin="75" end="76" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="125" sofa="1" begin="79" end="80" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="213" sofa="1" begin="146" end="147" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="229" sofa="1" begin="149" end="150" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:SYMToken xmi:id="61" sofa="1" begin="30" end="31" Lemma="*" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="69" sofa="1" begin="32" end="40" Lemma="patient" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="165" sofa="1" begin="101" end="112" Lemma="lymphocyte" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="253" sofa="1" begin="153" end="158" Lemma="cell" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="85" sofa="1" begin="46" end="51" Lemma="human" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="141" sofa="1" begin="85" end="93" Lemma="eligible" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="277" sofa="1" begin="166" end="176" Lemma="detectable" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="285" sofa="1" begin="177" end="182" Lemma="viral" PossibleAbbreviation="false"/><bmi:VBPToken xmi:id="133" sofa="1" begin="81" end="84" Lemma="be" PossibleAbbreviation="false"/><bmi:JJRToken xmi:id="173" sofa="1" begin="113" end="114" Lemma="&gt;" PossibleAbbreviation="false"/><bmi:CDToken xmi:id="181" sofa="1" begin="115" end="118" Lemma="350" PossibleAbbreviation="false"/><bmi:CDToken xmi:id="237" sofa="1" begin="150" end="151" Lemma="4" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="245" sofa="1" begin="151" end="152" Lemma="+" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="261" sofa="1" begin="159" end="162" Lemma="and" PossibleAbbreviation="false"/><bmi:Sentence xmi:id="301" sofa="1" begin="0" end="187"/><bmi:Dependency xmi:id="321" sofa="1" begin="0" end="10" Governor="21" Dependent="13" Relation="neg"/><bmi:Dependency xmi:id="344" sofa="1" begin="3" end="93" Governor="21" Dependent="141" Relation="dep"/><bmi:Dependency xmi:id="390" sofa="1" begin="3" end="28" Governor="21" Dependent="53" Relation="punct"/><bmi:Dependency xmi:id="367" sofa="1" begin="3" end="27" Governor="21" Dependent="45" Relation="nmod"/><bmi:Dependency xmi:id="413" sofa="1" begin="11" end="27" Governor="45" Dependent="29" Relation="case"/><bmi:Dependency xmi:id="436" sofa="1" begin="14" end="27" Governor="45" Dependent="37" Relation="det"/><bmi:Dependency xmi:id="643" sofa="1" begin="30" end="93" Governor="141" Dependent="61" Relation="dep"/><bmi:Dependency xmi:id="689" sofa="1" begin="32" end="93" Governor="141" Dependent="69" Relation="nsubj"/><bmi:Dependency xmi:id="459" sofa="1" begin="32" end="74" Governor="69" Dependent="101" Relation="nmod"/><bmi:Dependency xmi:id="482" sofa="1" begin="41" end="74" Governor="101" Dependent="77" Relation="case"/><bmi:Dependency xmi:id="505" sofa="1" begin="46" end="74" Governor="101" Dependent="85" Relation="amod"/><bmi:Dependency xmi:id="528" sofa="1" begin="52" end="74" Governor="101" Dependent="93" Relation="compound"/><bmi:Dependency xmi:id="551" sofa="1" begin="69" end="79" Governor="101" Dependent="117" Relation="appos"/><bmi:Dependency xmi:id="574" sofa="1" begin="75" end="79" Governor="117" Dependent="109" Relation="punct"/><bmi:Dependency xmi:id="597" sofa="1" begin="76" end="80" Governor="117" Dependent="125" Relation="punct"/><bmi:Dependency xmi:id="620" sofa="1" begin="81" end="93" Governor="141" Dependent="133" Relation="cop"/><bmi:Dependency xmi:id="666" sofa="1" begin="85" end="126" Governor="141" Dependent="189" Relation="advcl"/><bmi:Dependency xmi:id="735" sofa="1" begin="94" end="126" Governor="189" Dependent="149" Relation="mark"/><bmi:Dependency xmi:id="712" sofa="1" begin="97" end="112" Governor="165" Dependent="157" Relation="det"/><bmi:Dependency xmi:id="758" sofa="1" begin="101" end="126" Governor="189" Dependent="165" Relation="nsubj"/><bmi:Dependency xmi:id="781" sofa="1" begin="113" end="126" Governor="189" Dependent="173" Relation="dep"/><bmi:Dependency xmi:id="804" sofa="1" begin="115" end="126" Governor="189" Dependent="181" Relation="nummod"/><bmi:Dependency xmi:id="827" sofa="1" begin="119" end="145" Governor="189" Dependent="205" Relation="nmod"/><bmi:Dependency xmi:id="873" sofa="1" begin="127" end="145" Governor="205" Dependent="197" Relation="case"/><bmi:Dependency xmi:id="850" sofa="1" begin="130" end="187" Governor="205" Dependent="293" Relation="nummod"/><bmi:Dependency xmi:id="942" sofa="1" begin="130" end="158" Governor="205" Dependent="253" Relation="nummod"/><bmi:Dependency xmi:id="919" sofa="1" begin="130" end="151" Governor="205" Dependent="237" Relation="nummod"/><bmi:Dependency xmi:id="896" sofa="1" begin="130" end="149" Governor="205" Dependent="221" Relation="appos"/><bmi:Dependency xmi:id="965" sofa="1" begin="146" end="149" Governor="221" Dependent="213" Relation="punct"/><bmi:Dependency xmi:id="988" sofa="1" begin="147" end="150" Governor="221" Dependent="229" Relation="punct"/><bmi:Dependency xmi:id="1034" sofa="1" begin="150" end="187" Governor="237" Dependent="293" Relation="conj"/><bmi:Dependency xmi:id="1011" sofa="1" begin="150" end="162" Governor="237" Dependent="261" Relation="cc"/><bmi:Dependency xmi:id="1080" sofa="1" begin="150" end="158" Governor="237" Dependent="253" Relation="conj"/><bmi:Dependency xmi:id="1057" sofa="1" begin="150" end="152" Governor="237" Dependent="245" Relation="cc"/><bmi:Dependency xmi:id="1103" sofa="1" begin="163" end="187" Governor="293" Dependent="269" Relation="neg"/><bmi:Dependency xmi:id="1126" sofa="1" begin="166" end="187" Governor="293" Dependent="277" Relation="amod"/><bmi:Dependency xmi:id="1149" sofa="1" begin="177" end="187" Governor="293" Dependent="285" Relation="amod"/><bmi:BioMedicalEntity xmi:id="1156" sofa="1" begin="3" end="10" Terminology="SNOMED" TerminologyIdentifier="275572005####433276002####267021009####4908009####392521001####161504004####161556007####161768001####161424002####14732006####430696004####161432005####270473001####267007007####169563005####161665007####308069004####312442005####223361004####429950008####410513005####443508001####57177007####275529004####224052003####47009004####297241004####160801005####161429007####160471004####161798008####51042001####161464003####161506002####430679000####275560004####161672008####161615003####275526006####399211009####297250002####427858005####266994001####275571003####288256007####275569003####160800006####161663000####421654003####275104002####408552005####161769009####266988009####433164007####417662000####161486002####308070003####161413004####429952000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1165" sofa="1" begin="32" end="40" Terminology="SNOMED" TerminologyIdentifier="360160009####271300009####253620009####45341000####282119004####91251008####396451008####424966008####74036000####87385003####12026006####437871001####41778007####260809006####36682004####84847000####371883000####116154003####103324002" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1174" sofa="1" begin="46" end="74" Terminology="SNOMED" TerminologyIdentifier="230598008####19030005####89293008" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1183" sofa="1" begin="76" end="79" Terminology="SNOMED" TerminologyIdentifier="315124004####226164007####386708005####407515008####181681008####186803007" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1192" sofa="1" begin="81" end="84" Terminology="SNOMED" TerminologyIdentifier="168836005####36070007####258259005####27814009####301183007####159083000####256871003####116680003####88014003####60234000####149016008####58533008####118586006####78494001####263680009####226882008####100832001####160573003####67487000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1201" sofa="1" begin="101" end="112" Terminology="SNOMED" TerminologyIdentifier="56972008####112131005####255429003" Certainty="possible"/><bmi:BioMedicalEntity xmi:id="1210" sofa="1" begin="113" end="114" Terminology="SNOMED" TerminologyIdentifier="276140008####264706000####264705001####264708004" Certainty="possible"/><bmi:BioMedicalEntity xmi:id="1219" sofa="1" begin="119" end="126" Terminology="SNOMED" TerminologyIdentifier="16805009" Certainty="possible"/><bmi:BioMedicalEntity xmi:id="1228" sofa="1" begin="147" end="149" Terminology="SNOMED" TerminologyIdentifier="282254003####313392000####273362008####34000006####5801000124106####44057004####66586000####36266005####396331005####35815003####40275004####40992002" Certainty="possible"/><bmi:BioMedicalEntity xmi:id="1237" sofa="1" begin="153" end="158" Terminology="SNOMED" TerminologyIdentifier="37254006####312266001####254701007####254634000####415113000####365612007####54706004####165455001####276962007####89906000####115238001####276953005####362837007####165446004####418698006####16808006####165447008####10639003####71286001####415112005####165454002####254622008####59529006####112131005####24655002####254654004####28899001####7055007####276952000####400066006####74364000####4421005####29594005####116745007####399049001####402522006####49938009####254437001####254651007####1338007####276804009####418340005####188718006####165453008####423463003####165448003####402815007####254656002####254652000####255084004####63370004####165456000####422599000####414341000####74281007####255071008####104133003####279757004####426342006####84999002####165452003####40413002####254895003####276954004####165449006####254702000####165445000" Certainty="possible"/><bmi:BioMedicalEntity xmi:id="1246" sofa="1" begin="177" end="187" Terminology="SNOMED" TerminologyIdentifier="315124004####168210005####395058002" Certainty="possible"/><cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="No history of the following:&#10;&#10;* Patients with human immunodeficiency virus (HIV) are eligible if the lymphocytes &gt; 350 cluster of differentiation (CD)4+ cells and no detectable viral load&#10;&#10;"/><cas:View sofa="1" members="8 13 37 157 269 21 45 93 101 117 189 205 221 293 29 77 149 197 53 109 125 213 229 61 69 165 253 85 141 277 285 133 173 181 237 245 261 301 321 344 390 367 413 436 643 689 459 482 505 528 551 574 597 620 666 735 712 758 781 804 827 873 850 942 919 896 965 988 1034 1011 1080 1057 1103 1126 1149 1156 1165 1174 1183 1192 1201 1210 1219 1228 1237 1246"/></xmi:XMI>