[748a59]: / parsed_data / firstpass_NLPparsed / NCI-2014-01696.xmi

Download this file

1 lines (1 with data), 20.2 kB

1
<?xml version="1.0" encoding="UTF-8"?><xmi:XMI xmlns:tcas="http:///uima/tcas.ecore" xmlns:xmi="http://www.omg.org/XMI" xmlns:cas="http:///uima/cas.ecore" xmlns:bmi="http:///edu/buffalo/bmi.ecore" xmi:version="2.0"><cas:NULL xmi:id="0"/><tcas:DocumentAnnotation xmi:id="8" sofa="1" begin="0" end="297" language="x-unspecified"/><bmi:JJToken xmi:id="13" sofa="1" begin="0" end="8" Lemma="negative" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="85" sofa="1" begin="52" end="62" Lemma="infectious" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="117" sofa="1" begin="76" end="81" Lemma="human" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="205" sofa="1" begin="127" end="132" Lemma="human" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="301" sofa="1" begin="176" end="185" Lemma="mandatory" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="365" sofa="1" begin="212" end="220" Lemma="optional" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="21" sofa="1" begin="9" end="17" Lemma="serology" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="37" sofa="1" begin="19" end="27" Lemma="antibody" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="45" sofa="1" begin="28" end="32" Lemma="test" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="125" sofa="1" begin="82" end="98" Lemma="immunodeficiency" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="133" sofa="1" begin="99" end="104" Lemma="virus" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="149" sofa="1" begin="106" end="109" Lemma="hiv" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="165" sofa="1" begin="111" end="115" Lemma="type" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="213" sofa="1" begin="133" end="139" Lemma="t-cell" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="221" sofa="1" begin="140" end="148" Lemma="leukemia" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="229" sofa="1" begin="149" end="154" Lemma="virus" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="245" sofa="1" begin="156" end="160" Lemma="htlv" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="261" sofa="1" begin="162" end="166" Lemma="type" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="437" sofa="1" begin="258" end="265" Lemma="surface" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="445" sofa="1" begin="266" end="273" Lemma="antigen" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="477" sofa="1" begin="289" end="297" Lemma="antibody" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="29" sofa="1" begin="18" end="19" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="53" sofa="1" begin="32" end="33" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="101" sofa="1" begin="71" end="72" Lemma=":" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="141" sofa="1" begin="105" end="106" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="157" sofa="1" begin="109" end="110" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="237" sofa="1" begin="155" end="156" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="253" sofa="1" begin="160" end="161" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="293" sofa="1" begin="175" end="176" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="333" sofa="1" begin="203" end="204" Lemma="-lsb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="349" sofa="1" begin="206" end="207" Lemma="-rsb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="405" sofa="1" begin="241" end="242" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:INToken xmi:id="61" sofa="1" begin="34" end="37" Lemma="for" PossibleAbbreviation="false"/><bmi:INToken xmi:id="309" sofa="1" begin="186" end="188" Lemma="in" PossibleAbbreviation="false"/><bmi:INToken xmi:id="373" sofa="1" begin="221" end="223" Lemma="in" PossibleAbbreviation="false"/><bmi:DTToken xmi:id="69" sofa="1" begin="38" end="41" Lemma="the" PossibleAbbreviation="false"/><bmi:VBGToken xmi:id="77" sofa="1" begin="42" end="51" Lemma="follow" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="93" sofa="1" begin="63" end="71" Lemma="disease" PossibleAbbreviation="false"/><bmi:SYMToken xmi:id="109" sofa="1" begin="74" end="75" Lemma="*" PossibleAbbreviation="false"/><bmi:SYMToken xmi:id="197" sofa="1" begin="125" end="126" Lemma="*" PossibleAbbreviation="false"/><bmi:SYMToken xmi:id="413" sofa="1" begin="244" end="245" Lemma="*" PossibleAbbreviation="false"/><bmi:SYMToken xmi:id="453" sofa="1" begin="275" end="276" Lemma="*" PossibleAbbreviation="false"/><bmi:CDToken xmi:id="173" sofa="1" begin="116" end="117" Lemma="1" PossibleAbbreviation="false"/><bmi:CDToken xmi:id="189" sofa="1" begin="122" end="123" Lemma="2" PossibleAbbreviation="false"/><bmi:CDToken xmi:id="269" sofa="1" begin="167" end="168" Lemma="1" PossibleAbbreviation="false"/><bmi:CDToken xmi:id="285" sofa="1" begin="173" end="174" Lemma="2" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="181" sofa="1" begin="118" end="121" Lemma="and" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="277" sofa="1" begin="169" end="172" Lemma="and" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="357" sofa="1" begin="208" end="211" Lemma="but" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="389" sofa="1" begin="231" end="234" Lemma="and" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="317" sofa="1" begin="189" end="195" Lemma="United" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="341" sofa="1" begin="204" end="206" Lemma="US" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="381" sofa="1" begin="224" end="230" Lemma="Canada" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="397" sofa="1" begin="235" end="241" Lemma="Europe" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="421" sofa="1" begin="246" end="255" Lemma="Hepatitis" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="429" sofa="1" begin="256" end="257" Lemma="B" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="461" sofa="1" begin="277" end="286" Lemma="Hepatitis" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="469" sofa="1" begin="287" end="288" Lemma="C" PossibleAbbreviation="false"/><bmi:NNPSToken xmi:id="325" sofa="1" begin="196" end="202" Lemma="States" PossibleAbbreviation="false"/><bmi:Sentence xmi:id="485" sofa="1" begin="0" end="297"/><bmi:Dependency xmi:id="505" sofa="1" begin="0" end="17" Governor="21" Dependent="13" Relation="amod"/><bmi:Dependency xmi:id="574" sofa="1" begin="9" end="297" Governor="21" Dependent="477" Relation="dep"/><bmi:Dependency xmi:id="597" sofa="1" begin="9" end="72" Governor="21" Dependent="101" Relation="punct"/><bmi:Dependency xmi:id="551" sofa="1" begin="9" end="71" Governor="21" Dependent="93" Relation="nmod"/><bmi:Dependency xmi:id="528" sofa="1" begin="9" end="32" Governor="21" Dependent="45" Relation="appos"/><bmi:Dependency xmi:id="620" sofa="1" begin="18" end="32" Governor="45" Dependent="29" Relation="punct"/><bmi:Dependency xmi:id="643" sofa="1" begin="19" end="32" Governor="45" Dependent="37" Relation="compound"/><bmi:Dependency xmi:id="666" sofa="1" begin="28" end="33" Governor="45" Dependent="53" Relation="punct"/><bmi:Dependency xmi:id="689" sofa="1" begin="34" end="71" Governor="93" Dependent="61" Relation="case"/><bmi:Dependency xmi:id="712" sofa="1" begin="38" end="71" Governor="93" Dependent="69" Relation="det"/><bmi:Dependency xmi:id="735" sofa="1" begin="42" end="71" Governor="93" Dependent="77" Relation="amod"/><bmi:Dependency xmi:id="758" sofa="1" begin="52" end="71" Governor="93" Dependent="85" Relation="amod"/><bmi:Dependency xmi:id="1816" sofa="1" begin="74" end="273" Governor="445" Dependent="109" Relation="compound"/><bmi:Dependency xmi:id="804" sofa="1" begin="76" end="104" Governor="133" Dependent="117" Relation="amod"/><bmi:Dependency xmi:id="827" sofa="1" begin="82" end="104" Governor="133" Dependent="125" Relation="compound"/><bmi:Dependency xmi:id="896" sofa="1" begin="99" end="115" Governor="165" Dependent="133" Relation="compound"/><bmi:Dependency xmi:id="781" sofa="1" begin="99" end="109" Governor="133" Dependent="149" Relation="appos"/><bmi:Dependency xmi:id="850" sofa="1" begin="105" end="109" Governor="149" Dependent="141" Relation="punct"/><bmi:Dependency xmi:id="873" sofa="1" begin="106" end="110" Governor="149" Dependent="157" Relation="punct"/><bmi:Dependency xmi:id="1678" sofa="1" begin="111" end="273" Governor="445" Dependent="165" Relation="compound"/><bmi:Dependency xmi:id="965" sofa="1" begin="111" end="123" Governor="165" Dependent="189" Relation="conj"/><bmi:Dependency xmi:id="942" sofa="1" begin="111" end="121" Governor="165" Dependent="181" Relation="cc"/><bmi:Dependency xmi:id="919" sofa="1" begin="111" end="117" Governor="165" Dependent="173" Relation="nummod"/><bmi:Dependency xmi:id="1770" sofa="1" begin="122" end="273" Governor="445" Dependent="189" Relation="compound"/><bmi:Dependency xmi:id="1793" sofa="1" begin="125" end="273" Governor="445" Dependent="197" Relation="compound"/><bmi:Dependency xmi:id="988" sofa="1" begin="127" end="154" Governor="229" Dependent="205" Relation="amod"/><bmi:Dependency xmi:id="1011" sofa="1" begin="133" end="154" Governor="229" Dependent="213" Relation="compound"/><bmi:Dependency xmi:id="1034" sofa="1" begin="140" end="154" Governor="229" Dependent="221" Relation="compound"/><bmi:Dependency xmi:id="1195" sofa="1" begin="149" end="166" Governor="261" Dependent="229" Relation="compound"/><bmi:Dependency xmi:id="1057" sofa="1" begin="149" end="160" Governor="229" Dependent="245" Relation="appos"/><bmi:Dependency xmi:id="1080" sofa="1" begin="155" end="160" Governor="245" Dependent="237" Relation="punct"/><bmi:Dependency xmi:id="1103" sofa="1" begin="156" end="161" Governor="245" Dependent="253" Relation="punct"/><bmi:Dependency xmi:id="1609" sofa="1" begin="162" end="273" Governor="445" Dependent="261" Relation="compound"/><bmi:Dependency xmi:id="1172" sofa="1" begin="162" end="174" Governor="261" Dependent="285" Relation="conj"/><bmi:Dependency xmi:id="1149" sofa="1" begin="162" end="172" Governor="261" Dependent="277" Relation="cc"/><bmi:Dependency xmi:id="1126" sofa="1" begin="162" end="168" Governor="261" Dependent="269" Relation="nummod"/><bmi:Dependency xmi:id="1632" sofa="1" begin="173" end="273" Governor="445" Dependent="285" Relation="compound"/><bmi:Dependency xmi:id="1241" sofa="1" begin="173" end="220" Governor="285" Dependent="365" Relation="dep"/><bmi:Dependency xmi:id="1218" sofa="1" begin="173" end="185" Governor="285" Dependent="301" Relation="dep"/><bmi:Dependency xmi:id="1287" sofa="1" begin="175" end="185" Governor="301" Dependent="293" Relation="punct"/><bmi:Dependency xmi:id="1264" sofa="1" begin="176" end="242" Governor="301" Dependent="405" Relation="punct"/><bmi:Dependency xmi:id="1379" sofa="1" begin="176" end="220" Governor="301" Dependent="365" Relation="conj"/><bmi:Dependency xmi:id="1356" sofa="1" begin="176" end="211" Governor="301" Dependent="357" Relation="cc"/><bmi:Dependency xmi:id="1333" sofa="1" begin="176" end="206" Governor="301" Dependent="341" Relation="dep"/><bmi:Dependency xmi:id="1310" sofa="1" begin="176" end="202" Governor="301" Dependent="325" Relation="nmod"/><bmi:Dependency xmi:id="1402" sofa="1" begin="186" end="202" Governor="325" Dependent="309" Relation="case"/><bmi:Dependency xmi:id="1425" sofa="1" begin="189" end="202" Governor="325" Dependent="317" Relation="compound"/><bmi:Dependency xmi:id="1448" sofa="1" begin="203" end="206" Governor="341" Dependent="333" Relation="punct"/><bmi:Dependency xmi:id="1471" sofa="1" begin="204" end="207" Governor="341" Dependent="349" Relation="punct"/><bmi:Dependency xmi:id="1494" sofa="1" begin="212" end="241" Governor="365" Dependent="397" Relation="nmod"/><bmi:Dependency xmi:id="1517" sofa="1" begin="212" end="230" Governor="365" Dependent="381" Relation="nmod"/><bmi:Dependency xmi:id="1586" sofa="1" begin="221" end="230" Governor="381" Dependent="373" Relation="case"/><bmi:Dependency xmi:id="1563" sofa="1" begin="224" end="241" Governor="381" Dependent="397" Relation="conj"/><bmi:Dependency xmi:id="1540" sofa="1" begin="224" end="234" Governor="381" Dependent="389" Relation="cc"/><bmi:Dependency xmi:id="1655" sofa="1" begin="244" end="273" Governor="445" Dependent="413" Relation="compound"/><bmi:Dependency xmi:id="1701" sofa="1" begin="246" end="273" Governor="445" Dependent="421" Relation="compound"/><bmi:Dependency xmi:id="1724" sofa="1" begin="256" end="273" Governor="445" Dependent="429" Relation="compound"/><bmi:Dependency xmi:id="1747" sofa="1" begin="258" end="273" Governor="445" Dependent="437" Relation="compound"/><bmi:Dependency xmi:id="1862" sofa="1" begin="266" end="297" Governor="477" Dependent="445" Relation="compound"/><bmi:Dependency xmi:id="1885" sofa="1" begin="275" end="297" Governor="477" Dependent="453" Relation="amod"/><bmi:Dependency xmi:id="1839" sofa="1" begin="277" end="288" Governor="469" Dependent="461" Relation="compound"/><bmi:Dependency xmi:id="1908" sofa="1" begin="287" end="297" Governor="477" Dependent="469" Relation="compound"/><bmi:BioMedicalEntity xmi:id="1915" sofa="1" begin="0" end="8" Terminology="SNOMED" TerminologyIdentifier="256380007####256377006####116197008####256397001####256374004####269958004####260385009####256402002####65119002####60875001####256370008####256405000####401041004####165815009####256386001####393476003####256389008####256393002####256403007####76969000####256383009####256367009" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1924" sofa="1" begin="9" end="17" Terminology="SNOMED" TerminologyIdentifier="68793005" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1933" sofa="1" begin="19" end="32" Terminology="SNOMED" TerminologyIdentifier="359796005####250514000####117985004####117863006####414111007####121945002####104333007####118092009####45530001####121931008" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1942" sofa="1" begin="42" end="51" Terminology="SNOMED" TerminologyIdentifier="421939007####401338001####367409002####394411008####363708005####255260001" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1951" sofa="1" begin="52" end="71" Terminology="SNOMED" TerminologyIdentifier="128601007####189822004####76844004####40733004####266171003####161413004####128402005" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1960" sofa="1" begin="76" end="104" Terminology="SNOMED" TerminologyIdentifier="230598008####19030005####89293008" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1969" sofa="1" begin="106" end="109" Terminology="SNOMED" TerminologyIdentifier="315124004####226164007####386708005####407515008####181681008####186803007" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1978" sofa="1" begin="111" end="154" Terminology="SNOMED" TerminologyIdentifier="77457007####30417003" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1987" sofa="1" begin="156" end="160" Terminology="SNOMED" TerminologyIdentifier="407515008" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1996" sofa="1" begin="162" end="166" Terminology="SNOMED" TerminologyIdentifier="238620000####238618003####103185006####259934000####43476002####235906009####205813009####70410008####234583001####259930009####403767009####259929004####416780008####11244009####234619000####50056009####278358004####35362001####258199000####236461000####234582006####253149002####259935004####56120004####272402004####261988005####258195006####205258009####258191002####396491006####63661009####403768004####410657003####259931008####89293008####24653009####259932001####410656007####259936003####83015004####373413006####261664005####238622008####258201003####71751002####83728000####28861008####259879000####258212003####253147000####239152005####112143006####238619006####121237000####416975007####237651005####234620006####36115006####427167008####2017008####46635009####259933006####426015004" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="2005" sofa="1" begin="258" end="265" Terminology="SNOMED" TerminologyIdentifier="410679008####314250002####82645009####301898006####91044007####229682005####22290004####277925004####128178001####32910004####277926003####410678000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="2014" sofa="1" begin="266" end="273" Terminology="SNOMED" TerminologyIdentifier="53287001####78866000####260050004####56232009####36759005####260067006####260044009####66951008####64918001####260021006####103198002####2444009####260055009####260049004####18082002####303233001####88462002####51414008####252372003####67927008####103193006####25315004####260003008####259990006####260004002####14464003####32860006####260037000####9054000####260010002####75811002####81835007####21256006####60792004####260026001####260032006####260009007####259995001####260068001####13400000####58151002####78339005####260015007####260043003####22290004####120986001####5757007####259989002####48170001####260025002####260002003####252373008####260054008####260031004####39082004####260048007####103194000####86001006####259999007####62249003####34453005####19030005####37287005####260007009####117164003####35072007####259993008####260013000####81620008####71396007####250177007####260059003####67246004####4878009####59347001####64259001####260008004####259994002####72584001####260042008####260014006####58402009####46158008####260069009####38771008####80620002####53047000####47851007####260053002####60904002####15286009####260036009####39241007####10393009####260064004####117163009####260070005####64517003####49106003####260019001####24995003####260029008####27340007####46261003####260006000####259992003####260035008####260012005####53553005####36842009####78605001####55660005####57652005####260058006####60215000####6592009####81426006####260024003####54237000####33680002####23774005####259998004####260041001####260017004####36744004####260052007####86272009####3067005####260065003####89526005####260018009####43871002####259997009####64566001####260023009####38554009####57641004####86697000####7120007####67064004####252381009####260060008####55036005####121094000####260057001####80122009####259996000####64273005####10440007####260039002####260016008####260040000####112128009####47860004####14711003####18195009####260034007####68420003####260066002####260028000####397918000####72845001####59723005####260045005####48417000####47038001####64846003####12934002####260056005####90714008####23016008####84538003####46150001####13625002####22348007####64279009####34868000####13701000####260000006####260033001####49677005####18611000####260005001####259991005####1517000####56114000####20493009####48401006####260011003####72833005####260022004####409629009####41576009" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="2023" sofa="1" begin="289" end="297" Terminology="SNOMED" TerminologyIdentifier="259855002####31960007####120876003####259837006####120650000####82645009####399839003####120691003####259842003####53793005####444047001####68498002####103178007####112133008####234433009####120941004####19030005####255805004####77023005####45530001####44212003####359788000" Certainty="affirmed"/><cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="Negative serology (antibody test) for the following infectious diseases:&#10;&#10;* Human immunodeficiency virus (HIV) type 1 and 2&#10;&#10;* Human T-cell leukemia virus (HTLV) type 1 and 2 (mandatory in United States [US] but optional in Canada and Europe)&#10;&#10;* Hepatitis B surface antigen&#10;&#10;* Hepatitis C antibody"/><cas:View sofa="1" members="8 13 85 117 205 301 365 21 37 45 125 133 149 165 213 221 229 245 261 437 445 477 29 53 101 141 157 237 253 293 333 349 405 61 309 373 69 77 93 109 197 413 453 173 189 269 285 181 277 357 389 317 341 381 397 421 429 461 469 325 485 505 574 597 551 528 620 643 666 689 712 735 758 1816 804 827 896 781 850 873 1678 965 942 919 1770 1793 988 1011 1034 1195 1057 1080 1103 1609 1172 1149 1126 1632 1241 1218 1287 1264 1379 1356 1333 1310 1402 1425 1448 1471 1494 1517 1586 1563 1540 1655 1701 1724 1747 1862 1885 1839 1908 1915 1924 1933 1942 1951 1960 1969 1978 1987 1996 2005 2014 2023"/></xmi:XMI>