[748a59]: / parsed_data / firstpass_NLPparsed / NCI-2011-00878.xmi

Download this file

1 lines (1 with data), 16.9 kB

1
<?xml version="1.0" encoding="UTF-8"?><xmi:XMI xmlns:tcas="http:///uima/tcas.ecore" xmlns:xmi="http://www.omg.org/XMI" xmlns:cas="http:///uima/cas.ecore" xmlns:bmi="http:///edu/buffalo/bmi.ecore" xmi:version="2.0"><cas:NULL xmi:id="0"/><tcas:DocumentAnnotation xmi:id="8" sofa="1" begin="0" end="348" language="x-unspecified"/><bmi:JJToken xmi:id="13" sofa="1" begin="0" end="6" Lemma="severe" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="29" sofa="1" begin="8" end="14" Lemma="active" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="101" sofa="1" begin="62" end="68" Lemma="immune" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="165" sofa="1" begin="107" end="114" Lemma="current" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="277" sofa="1" begin="182" end="187" Lemma="human" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="405" sofa="1" begin="271" end="288" Lemma="protocol-specific" PossibleAbbreviation="false"/><bmi:JJToken xmi:id="445" sofa="1" begin="319" end="337" Lemma="immuno-compromised" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="21" sofa="1" begin="6" end="7" Lemma="," PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="45" sofa="1" begin="27" end="28" Lemma="," PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="77" sofa="1" begin="47" end="48" Lemma=":" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="125" sofa="1" begin="89" end="90" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="141" sofa="1" begin="94" end="95" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="221" sofa="1" begin="158" end="159" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="237" sofa="1" begin="162" end="163" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="253" sofa="1" begin="174" end="175" Lemma=";" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="269" sofa="1" begin="180" end="181" Lemma=":" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="301" sofa="1" begin="211" end="212" Lemma="-lrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="317" sofa="1" begin="215" end="216" Lemma="-rrb-" PossibleAbbreviation="false"/><bmi:PunctToken xmi:id="397" sofa="1" begin="269" end="270" Lemma=";" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="37" sofa="1" begin="15" end="27" Lemma="co-morbidity" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="109" sofa="1" begin="69" end="79" Lemma="deficiency" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="117" sofa="1" begin="80" end="88" Lemma="syndrome" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="133" sofa="1" begin="90" end="94" Lemma="aids" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="245" sofa="1" begin="164" end="174" Lemma="definition" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="261" sofa="1" begin="176" end="180" Lemma="note" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="285" sofa="1" begin="188" end="204" Lemma="immunodeficiency" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="293" sofa="1" begin="205" end="210" Lemma="virus" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="309" sofa="1" begin="212" end="215" Lemma="hiv" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="325" sofa="1" begin="217" end="224" Lemma="testing" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="365" sofa="1" begin="245" end="250" Lemma="entry" PossibleAbbreviation="false"/><bmi:NNToken xmi:id="389" sofa="1" begin="261" end="269" Lemma="protocol" PossibleAbbreviation="false"/><bmi:VBNToken xmi:id="53" sofa="1" begin="29" end="36" Lemma="define" PossibleAbbreviation="false"/><bmi:VBNToken xmi:id="93" sofa="1" begin="53" end="61" Lemma="acquire" PossibleAbbreviation="false"/><bmi:VBNToken xmi:id="149" sofa="1" begin="96" end="101" Lemma="base" PossibleAbbreviation="false"/><bmi:VBNToken xmi:id="349" sofa="1" begin="232" end="240" Lemma="require" PossibleAbbreviation="false"/><bmi:INToken xmi:id="61" sofa="1" begin="37" end="39" Lemma="as" PossibleAbbreviation="false"/><bmi:INToken xmi:id="157" sofa="1" begin="102" end="106" Lemma="upon" PossibleAbbreviation="false"/><bmi:INToken xmi:id="181" sofa="1" begin="123" end="126" Lemma="for" PossibleAbbreviation="false"/><bmi:INToken xmi:id="357" sofa="1" begin="241" end="244" Lemma="for" PossibleAbbreviation="false"/><bmi:INToken xmi:id="373" sofa="1" begin="251" end="255" Lemma="into" PossibleAbbreviation="false"/><bmi:VBZToken xmi:id="69" sofa="1" begin="40" end="47" Lemma="follow" PossibleAbbreviation="false"/><bmi:VBZToken xmi:id="333" sofa="1" begin="225" end="227" Lemma="be" PossibleAbbreviation="false"/><bmi:SYMToken xmi:id="85" sofa="1" begin="51" end="52" Lemma="*" PossibleAbbreviation="false"/><bmi:NNPSToken xmi:id="173" sofa="1" begin="115" end="122" Lemma="Centers" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="189" sofa="1" begin="127" end="134" Lemma="Disease" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="197" sofa="1" begin="135" end="142" Lemma="Control" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="213" sofa="1" begin="147" end="157" Lemma="Prevention" PossibleAbbreviation="false"/><bmi:NNPToken xmi:id="229" sofa="1" begin="159" end="162" Lemma="CDC" PossibleAbbreviation="false"/><bmi:CCToken xmi:id="205" sofa="1" begin="143" end="146" Lemma="and" PossibleAbbreviation="false"/><bmi:RBToken xmi:id="341" sofa="1" begin="228" end="231" Lemma="not" PossibleAbbreviation="false"/><bmi:RBToken xmi:id="429" sofa="1" begin="306" end="310" Lemma="also" PossibleAbbreviation="false"/><bmi:DTToken xmi:id="381" sofa="1" begin="256" end="260" Lemma="this" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="413" sofa="1" begin="289" end="301" Lemma="requirement" PossibleAbbreviation="false"/><bmi:NNSToken xmi:id="453" sofa="1" begin="338" end="346" Lemma="patient" PossibleAbbreviation="false"/><bmi:MDToken xmi:id="421" sofa="1" begin="302" end="305" Lemma="may" PossibleAbbreviation="false"/><bmi:VBToken xmi:id="437" sofa="1" begin="311" end="318" Lemma="exclude" PossibleAbbreviation="false"/><bmi:Sentence xmi:id="461" sofa="1" begin="0" end="346"/><bmi:Dependency xmi:id="481" sofa="1" begin="0" end="27" Governor="37" Dependent="13" Relation="amod"/><bmi:Dependency xmi:id="504" sofa="1" begin="6" end="27" Governor="37" Dependent="21" Relation="punct"/><bmi:Dependency xmi:id="527" sofa="1" begin="8" end="27" Governor="37" Dependent="29" Relation="amod"/><bmi:Dependency xmi:id="573" sofa="1" begin="15" end="36" Governor="37" Dependent="53" Relation="acl"/><bmi:Dependency xmi:id="550" sofa="1" begin="15" end="28" Governor="37" Dependent="45" Relation="punct"/><bmi:Dependency xmi:id="596" sofa="1" begin="29" end="47" Governor="53" Dependent="69" Relation="advcl"/><bmi:Dependency xmi:id="619" sofa="1" begin="37" end="47" Governor="69" Dependent="61" Relation="mark"/><bmi:Dependency xmi:id="665" sofa="1" begin="40" end="52" Governor="69" Dependent="85" Relation="dep"/><bmi:Dependency xmi:id="642" sofa="1" begin="40" end="48" Governor="69" Dependent="77" Relation="punct"/><bmi:Dependency xmi:id="688" sofa="1" begin="51" end="180" Governor="85" Dependent="261" Relation="dep"/><bmi:Dependency xmi:id="734" sofa="1" begin="51" end="175" Governor="85" Dependent="253" Relation="punct"/><bmi:Dependency xmi:id="711" sofa="1" begin="51" end="88" Governor="85" Dependent="117" Relation="dobj"/><bmi:Dependency xmi:id="803" sofa="1" begin="53" end="88" Governor="117" Dependent="93" Relation="amod"/><bmi:Dependency xmi:id="826" sofa="1" begin="62" end="88" Governor="117" Dependent="101" Relation="amod"/><bmi:Dependency xmi:id="849" sofa="1" begin="69" end="88" Governor="117" Dependent="109" Relation="compound"/><bmi:Dependency xmi:id="780" sofa="1" begin="80" end="101" Governor="117" Dependent="149" Relation="acl"/><bmi:Dependency xmi:id="757" sofa="1" begin="80" end="94" Governor="117" Dependent="133" Relation="appos"/><bmi:Dependency xmi:id="895" sofa="1" begin="89" end="94" Governor="133" Dependent="125" Relation="punct"/><bmi:Dependency xmi:id="872" sofa="1" begin="90" end="95" Governor="133" Dependent="141" Relation="punct"/><bmi:Dependency xmi:id="918" sofa="1" begin="96" end="122" Governor="149" Dependent="173" Relation="nmod"/><bmi:Dependency xmi:id="941" sofa="1" begin="102" end="122" Governor="173" Dependent="157" Relation="case"/><bmi:Dependency xmi:id="964" sofa="1" begin="107" end="122" Governor="173" Dependent="165" Relation="amod"/><bmi:Dependency xmi:id="1010" sofa="1" begin="115" end="174" Governor="173" Dependent="245" Relation="nmod"/><bmi:Dependency xmi:id="987" sofa="1" begin="115" end="142" Governor="173" Dependent="197" Relation="nmod"/><bmi:Dependency xmi:id="1033" sofa="1" begin="123" end="142" Governor="197" Dependent="181" Relation="case"/><bmi:Dependency xmi:id="1056" sofa="1" begin="127" end="142" Governor="197" Dependent="189" Relation="compound"/><bmi:Dependency xmi:id="1102" sofa="1" begin="135" end="174" Governor="197" Dependent="245" Relation="conj"/><bmi:Dependency xmi:id="1079" sofa="1" begin="135" end="146" Governor="197" Dependent="205" Relation="cc"/><bmi:Dependency xmi:id="1194" sofa="1" begin="147" end="174" Governor="245" Dependent="213" Relation="compound"/><bmi:Dependency xmi:id="1125" sofa="1" begin="147" end="162" Governor="213" Dependent="229" Relation="appos"/><bmi:Dependency xmi:id="1148" sofa="1" begin="158" end="162" Governor="229" Dependent="221" Relation="punct"/><bmi:Dependency xmi:id="1171" sofa="1" begin="159" end="163" Governor="229" Dependent="237" Relation="punct"/><bmi:Dependency xmi:id="1240" sofa="1" begin="176" end="240" Governor="261" Dependent="349" Relation="dep"/><bmi:Dependency xmi:id="1217" sofa="1" begin="176" end="181" Governor="261" Dependent="269" Relation="punct"/><bmi:Dependency xmi:id="1263" sofa="1" begin="182" end="210" Governor="293" Dependent="277" Relation="amod"/><bmi:Dependency xmi:id="1286" sofa="1" begin="188" end="210" Governor="293" Dependent="285" Relation="compound"/><bmi:Dependency xmi:id="1378" sofa="1" begin="205" end="224" Governor="325" Dependent="293" Relation="compound"/><bmi:Dependency xmi:id="1309" sofa="1" begin="205" end="215" Governor="293" Dependent="309" Relation="appos"/><bmi:Dependency xmi:id="1332" sofa="1" begin="211" end="215" Governor="309" Dependent="301" Relation="punct"/><bmi:Dependency xmi:id="1355" sofa="1" begin="212" end="216" Governor="309" Dependent="317" Relation="punct"/><bmi:Dependency xmi:id="1447" sofa="1" begin="217" end="240" Governor="349" Dependent="325" Relation="nsubjpass"/><bmi:Dependency xmi:id="1470" sofa="1" begin="225" end="240" Governor="349" Dependent="333" Relation="auxpass"/><bmi:Dependency xmi:id="1493" sofa="1" begin="228" end="240" Governor="349" Dependent="341" Relation="neg"/><bmi:Dependency xmi:id="1424" sofa="1" begin="232" end="318" Governor="349" Dependent="437" Relation="parataxis"/><bmi:Dependency xmi:id="1401" sofa="1" begin="232" end="270" Governor="349" Dependent="397" Relation="punct"/><bmi:Dependency xmi:id="1516" sofa="1" begin="232" end="250" Governor="349" Dependent="365" Relation="nmod"/><bmi:Dependency xmi:id="1562" sofa="1" begin="241" end="250" Governor="365" Dependent="357" Relation="case"/><bmi:Dependency xmi:id="1539" sofa="1" begin="245" end="269" Governor="365" Dependent="389" Relation="nmod"/><bmi:Dependency xmi:id="1585" sofa="1" begin="251" end="269" Governor="389" Dependent="373" Relation="case"/><bmi:Dependency xmi:id="1608" sofa="1" begin="256" end="269" Governor="389" Dependent="381" Relation="det"/><bmi:Dependency xmi:id="1631" sofa="1" begin="271" end="301" Governor="413" Dependent="405" Relation="amod"/><bmi:Dependency xmi:id="1654" sofa="1" begin="289" end="318" Governor="437" Dependent="413" Relation="nsubj"/><bmi:Dependency xmi:id="1677" sofa="1" begin="302" end="318" Governor="437" Dependent="421" Relation="aux"/><bmi:Dependency xmi:id="1700" sofa="1" begin="306" end="318" Governor="437" Dependent="429" Relation="advmod"/><bmi:Dependency xmi:id="1723" sofa="1" begin="311" end="346" Governor="437" Dependent="453" Relation="dobj"/><bmi:Dependency xmi:id="1746" sofa="1" begin="319" end="346" Governor="453" Dependent="445" Relation="amod"/><bmi:BioMedicalEntity xmi:id="1753" sofa="1" begin="0" end="6" Terminology="SNOMED" TerminologyIdentifier="161045001####24484000####313299006####25967007####62676009####21594007" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1762" sofa="1" begin="8" end="14" Terminology="SNOMED" TerminologyIdentifier="124214007####24594008####312453004####228452000####197284004####93235007####171165007####47757001####55561003####146684000####115470003####228453005####228447005####54470008####237755009####139451009####124221007####124220008####162171002####237751000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1771" sofa="1" begin="29" end="36" Terminology="SNOMED" TerminologyIdentifier="129729005####900000000000073002####260409000####300841009" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1780" sofa="1" begin="40" end="47" Terminology="SNOMED" TerminologyIdentifier="421939007####401338001####367409002####394411008####363708005####255260001" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1789" sofa="1" begin="53" end="88" Terminology="SNOMED" TerminologyIdentifier="62479008####186705005" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1798" sofa="1" begin="96" end="101" Terminology="SNOMED" TerminologyIdentifier="277701000####418836005####63813000####10024003####243216006####243215005####39463000####314791004####184888004####243218007####243217002" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1807" sofa="1" begin="107" end="114" Terminology="SNOMED" TerminologyIdentifier="219006####15240007####105542008####410585006####228319007####410584005####160573003" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1816" sofa="1" begin="164" end="174" Terminology="SNOMED" TerminologyIdentifier="900000000000550004####260409000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1825" sofa="1" begin="182" end="210" Terminology="SNOMED" TerminologyIdentifier="230598008####19030005####89293008" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1834" sofa="1" begin="212" end="215" Terminology="SNOMED" TerminologyIdentifier="315124004####226164007####386708005####407515008####181681008####186803007" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1843" sofa="1" begin="217" end="224" Terminology="SNOMED" TerminologyIdentifier="171121004####396550006" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1852" sofa="1" begin="225" end="227" Terminology="SNOMED" TerminologyIdentifier="168836005####36070007####258259005####27814009####301183007####159083000####256871003####116680003####88014003####60234000####149016008####58533008####118586006####78494001####263680009####226882008####100832001####160573003####67487000" Certainty="affirmed"/><bmi:BioMedicalEntity xmi:id="1861" sofa="1" begin="232" end="240" Terminology="SNOMED" TerminologyIdentifier="225761000" Certainty="negated"/><bmi:BioMedicalEntity xmi:id="1870" sofa="1" begin="245" end="269" Terminology="SNOMED" TerminologyIdentifier="394837003####394404009" Certainty="negated"/><bmi:BioMedicalEntity xmi:id="1879" sofa="1" begin="289" end="301" Terminology="SNOMED" TerminologyIdentifier="226253000" Certainty="negated"/><bmi:BioMedicalEntity xmi:id="1888" sofa="1" begin="311" end="318" Terminology="SNOMED" TerminologyIdentifier="77765009####76053005" Certainty="negated"/><bmi:BioMedicalEntity xmi:id="1897" sofa="1" begin="338" end="346" Terminology="SNOMED" TerminologyIdentifier="360160009####271300009####253620009####45341000####282119004####91251008####396451008####424966008####74036000####87385003####12026006####437871001####41778007####260809006####36682004####84847000####371883000####116154003####103324002" Certainty="negated"/><cas:Sofa xmi:id="1" sofaNum="1" sofaID="_InitialView" mimeType="text" sofaString="Severe, active co-morbidity, defined as follows:&#10;&#10;&#10;* Acquired immune deficiency syndrome (AIDS) based upon current Centers for Disease Control and Prevention (CDC) definition; note: human immunodeficiency virus (HIV) testing is not required for entry into this protocol; protocol-specific requirements may also exclude immuno-compromised patients&#10;&#10;"/><cas:View sofa="1" members="8 13 29 101 165 277 405 445 21 45 77 125 141 221 237 253 269 301 317 397 37 109 117 133 245 261 285 293 309 325 365 389 53 93 149 349 61 157 181 357 373 69 333 85 173 189 197 213 229 205 341 429 381 413 453 421 437 461 481 504 527 573 550 596 619 665 642 688 734 711 803 826 849 780 757 895 872 918 941 964 1010 987 1033 1056 1102 1079 1194 1125 1148 1171 1240 1217 1263 1286 1378 1309 1332 1355 1447 1470 1493 1424 1401 1516 1562 1539 1585 1608 1631 1654 1677 1700 1723 1746 1753 1762 1771 1780 1789 1798 1807 1816 1825 1834 1843 1852 1861 1870 1879 1888 1897"/></xmi:XMI>