--- a +++ b/data/scarHRD/sample.txt @@ -0,0 +1,52 @@ +SampleID Chromosome Start_position End_position total_cn A_cn B_cn ploidy +sample chr1 900001 9500000 5 5 0 5 +sample chr1 9600001 248900000 6 6 0 5 +sample chr11 200001 18400000 7 7 0 5 +sample chr12 100001 41900000 6 6 0 5 +sample chr12 41900001 43100000 5 5 0 5 +sample chr12 43100001 133275309 6 6 0 5 +sample chr14 20000001 106900000 5 5 0 5 +sample chr15 22800001 101800000 5 5 0 5 +sample chr16 5400001 7100000 6 6 0 5 +sample chr16 7100001 90100000 7 7 0 5 +sample chr17 200001 22700000 5 5 0 5 +sample chr17 27100001 35600000 7 7 0 5 +sample chr17 35700001 83200000 6 6 0 5 +sample chr18 200001 39200000 5 5 0 5 +sample chr18 39200001 39700000 4 4 0 5 +sample chr18 39700001 50200000 5 5 0 5 +sample chr18 50200001 63400000 4 4 0 5 +sample chr18 63400001 75500000 5 5 0 5 +sample chr18 75500001 79100000 4 4 0 5 +sample chr18 79100001 80300000 5 5 0 5 +sample chr19 300001 58600000 6 6 0 5 +sample chr2 1 62900000 7 7 0 5 +sample chr2 62900001 63300000 5 5 0 5 +sample chr2 63300001 242100000 7 7 0 5 +sample chr20 1 14400000 9 9 0 5 +sample chr20 14400001 16200000 8 8 0 5 +sample chr20 16200001 64300000 9 9 0 5 +sample chr21 10200001 46700000 6 6 0 5 +sample chr22 16900001 50700000 6 6 0 5 +sample chr3 100001 7900000 7 7 0 5 +sample chr3 7900001 11400000 6 6 0 5 +sample chr3 11400001 198100000 7 7 0 5 +sample chr4 100001 189500000 5 5 0 5 +sample chr5 100001 164800000 6 6 0 5 +sample chr5 164800001 170800000 5 5 0 5 +sample chr5 170800001 181300000 6 6 0 5 +sample chr6 400001 45700000 6 6 0 5 +sample chr6 45700001 62800000 7 7 0 5 +sample chr6 62800001 64500000 9 9 0 5 +sample chr6 64500001 66200000 7 7 0 5 +sample chr6 162000001 162500000 5 5 0 5 +sample chr6 162500001 170600000 6 6 0 5 +sample chr7 1 32200000 11 11 0 5 +sample chr7 32200001 65400000 10 10 0 5 +sample chr7 65900001 159200000 7 7 0 5 +sample chr8 500001 33600000 4 4 0 5 +sample chr8 33600001 36400000 7 7 0 5 +sample chr8 36400001 38200000 4 4 0 5 +sample chr8 38200001 60500000 8 8 0 5 +sample chr8 60500001 61500000 10 10 0 5 +sample chr9 200001 138100000 6 6 0 5