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:
cathy-stones
/
deepvariant-r1.6.1
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Initial commit
Authored by:
cathy-stones
2024-08-08
Browse code at this revision
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deepvariant/testdata/golden.training_examples.vcf
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deepvariant/testdata/golden.vcf_candidate_importer.training_examples.tfrecord.gz
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deepvariant/testdata/golden.vcf_candidate_importer.training_examples.tfrecord.gz.example_info.json
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deepvariant/testdata/golden.vcf_candidate_importer_calling_examples.tfrecord
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deepvariant/testdata/golden.vcf_candidate_importer_calling_examples.tfrecord.example_info.json
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deepvariant/testdata/golden.vcf_candidate_importer_calling_examples.tfrecord.gz.example_info.json
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deepvariant/testdata/golden.vcf_candidate_importer_postprocess_single_site_input-00000-of-00001.tfrecord.gz
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deepvariant/testdata/golden.vcf_candidate_importer_postprocess_single_site_output.vcf
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deepvariant/testdata/input/HG002.hifi.hg37.phased.chr20.1_1000000.bam
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deepvariant/testdata/input/HG002.hifi.hg37.phased.chr20.1_1000000.bam.bai
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deepvariant/testdata/input/HG002_GRCh37_chr20_1_1000000_svs.vcf.gz
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deepvariant/testdata/input/HG002_GRCh37_chr20_1_1000000_svs.vcf.gz.tbi
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deepvariant/testdata/input/HG002_NIST_150bp_downsampled_30x.chr20.10_10p1mb.bam
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deepvariant/testdata/input/HG002_NIST_150bp_downsampled_30x.chr20.10_10p1mb.bam.bai
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.bam
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.bam.bai
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.cram
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.cram.crai
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.first_half.bam
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.first_half.bam.bai
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.second_half.bam
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.second_half.bam.bai
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deepvariant/testdata/input/allele_frequencies_vcf.vcf.gz
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deepvariant/testdata/input/allele_frequencies_vcf.vcf.gz.tbi
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deepvariant/testdata/input/cohort-chr20_100k.vcf.gz
deepvariant/testdata/golden.training_examples.vcf
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deepvariant/testdata/golden.vcf_candidate_importer.training_examples.tfrecord.gz
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deepvariant/testdata/golden.vcf_candidate_importer.training_examples.tfrecord.gz.example_info.json
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deepvariant/testdata/golden.vcf_candidate_importer_calling_examples.tfrecord
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deepvariant/testdata/golden.vcf_candidate_importer_calling_examples.tfrecord.example_info.json
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deepvariant/testdata/golden.vcf_candidate_importer_calling_examples.tfrecord.gz.example_info.json
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deepvariant/testdata/golden.vcf_candidate_importer_postprocess_single_site_input-00000-of-00001.tfrecord.gz
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deepvariant/testdata/golden.vcf_candidate_importer_postprocess_single_site_output.vcf
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deepvariant/testdata/input/HG002.hifi.hg37.phased.chr20.1_1000000.bam
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deepvariant/testdata/input/HG002.hifi.hg37.phased.chr20.1_1000000.bam.bai
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deepvariant/testdata/input/HG002_GRCh37_chr20_1_1000000_svs.vcf.gz
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deepvariant/testdata/input/HG002_GRCh37_chr20_1_1000000_svs.vcf.gz.tbi
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deepvariant/testdata/input/HG002_NIST_150bp_downsampled_30x.chr20.10_10p1mb.bam
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deepvariant/testdata/input/HG002_NIST_150bp_downsampled_30x.chr20.10_10p1mb.bam.bai
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.bam
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.cram
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.cram.crai
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.first_half.bam
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.first_half.bam.bai
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.second_half.bam
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deepvariant/testdata/input/NA12878_S1.chr20.10_10p1mb.second_half.bam.bai
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deepvariant/testdata/input/allele_frequencies_vcf.vcf.gz
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deepvariant/testdata/input/allele_frequencies_vcf.vcf.gz.tbi
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deepvariant/testdata/input/cohort-chr20_100k.vcf.gz
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