20 lines (19 with data), 1.3 kB

##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth of all passing filters reads.">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth of all passing filters reads for each allele.">
##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions.">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype likelihoods, log10 encoded">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype likelihoods, Phred encoded">
##INFO=<ID=END,Number=1,Type=Integer,Description="Stop position of the interval">
##contig=<ID=Chr1,length=50>
##contig=<ID=Chr2,length=25>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Fido	Spot
Chr1	21	DogSNP1	A	T	0	.	.	GT:GQ	0/1:.	0/1:42
Chr1	22	DogSNP2	A	T	0	.	.	GT:PL:VAF	0/1:.:0.9	0/1:10,0,20:0.6
Chr1	23	DogSNP3	A	T	0	.	.	GT:PL:VAF	0/1:.:0.9	0/1:10,0,20:.
Chr1	24	DogSNP4	A	T,C	10	.	.	GT:PL:VAF	0/1:.:0.48,0.02	0/1:10,0,20,50,50,50:0.5,0
Chr1	25	DogSNP5	A	T,C	20	.	.	GT:PL:VAF	0/1:10,0,20,50,50,50:.	0/1:10,0,20,50,50,50:0.4,0.1
Chr1	26	DogSNP6	A	T,C,G	30	.	.	GT:GQ:PL:VAF	0/1:42:10,0,20,99,99,99,99,99,99,99:0.5,0.05,0.03	0/1:42:10,0,20,99,99,99,99,99,99,99:0.6,0.1,0