[9b26b7]: / third_party / nucleus / testdata / test_phaseset.vcf

Download this file

17 lines (16 with data), 1.0 kB

##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth of all passing filters reads.">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth of all passing filters reads for each allele.">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype likelihoods, log10 encoded">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype likelihoods, Phred encoded">
##FORMAT=<ID=PS,Number=1,Type=Integer,Description="Phase set for GT">
##contig=<ID=Chr1,length=50>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Fido	Spot
Chr1	21	DogSNP1	A	T	0	.	.	GT:GQ	0/1:.	0/1:42
Chr1	22	DogSNP2	A	T	0	.	.	GT:PL	0/1:.	0|1:50,40,60
Chr1	23	DogSNP3	A	T	0	.	.	GT:GL:PS	0/1:.:.	0/1:-5.0,-4.0,-6.0:.
Chr1	24	DogSNP4	A	T	0	.	.	GT:PL:PS	0|1:50,40,60:24	0|1:50,40,60:.
Chr1	25	DogSNP5	A	T	0	.	.	GT:GQ:PS:PL	0|1:42:24:50,40,60	1|1:42:.:50,40,60