[9b26b7]: / third_party / nucleus / testdata / test_likelihoods_input.vcf

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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth of all passing filters reads.">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth of all passing filters reads for each allele.">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype likelihoods, log10 encoded">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Genotype likelihoods, Phred encoded">
##contig=<ID=Chr1,length=50>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	Fido	Spot
Chr1	21	DogSNP1	A	T	0	.	.	GT:GQ	0/1:.	0/1:42
Chr1	22	DogSNP2	A	T	0	.	.	GT:PL	0/1:.	0/1:50,40,60
Chr1	23	DogSNP3	A	T	0	.	.	GT:GL	0/1:.	0/1:-5.0,-4.0,-6.0
Chr1	24	DogSNP4	A	T	0	.	.	GT:PL	0/1:50,40,60	0/1:50,40,60
Chr1	25	DogSNP5	A	T	0	.	.	GT:GQ:PL	0/1:42:50,40,60	0/1:42:50,40,60
Chr1	26	DogSNP6	A	T	.	.	.	GT:GQ:GL:PL	0/1:42:-100,-10,-1:50,40,60	0/1:42:-1000,-100,-5:50,40,60
Chr1	27	DogSNP7	A	T	0	.	.	GT:GL	0/1:.	0/1:-0.00031839,-3.6121,-54.5012