Downloads: 0
1335 lines (1334 with data), 98.1 kB
##fileformat=VCFv4.2 ##FILTER=<ID=PASS,Description="All filters passed"> ##FILTER=<ID=RefCall,Description="Genotyping model thinks this site is reference."> ##FILTER=<ID=LowQual,Description="Confidence in this variant being real is below calling threshold."> ##FILTER=<ID=NoCall,Description="Site has depth=0 resulting in no call."> ##INFO=<ID=END,Number=1,Type=Integer,Description="End position (for use with symbolic alleles)"> ##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype"> ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Conditional genotype quality"> ##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read depth"> ##FORMAT=<ID=MIN_DP,Number=1,Type=Integer,Description="Minimum DP observed within the GVCF block."> ##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Read depth for each allele"> ##FORMAT=<ID=VAF,Number=A,Type=Float,Description="Variant allele fractions."> ##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled genotype likelihoods rounded to the closest integer"> ##FORMAT=<ID=MED_DP,Number=1,Type=Integer,Description="Median DP observed within the GVCF block rounded to the nearest integer."> ##DeepVariant_version=1.6.0 ##contig=<ID=20,length=63025520> #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT child 20 10000000 . T <*> 0 . END=10000011 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000012 . G <*> 0 . END=10000012 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10000013 . C <*> 0 . END=10000013 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000014 . T <*> 0 . END=10000033 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10000034 . C <*> 0 . END=10000035 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10000036 . A <*> 0 . END=10000040 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10000041 . G <*> 0 . END=10000047 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10000048 . C <*> 0 . END=10000051 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10000052 . A <*> 0 . END=10000056 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10000057 . T <*> 0 . END=10000057 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10000058 . G <*> 0 . END=10000058 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10000059 . T <*> 0 . END=10000076 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10000077 . T <*> 0 . END=10000077 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000078 . T <*> 0 . END=10000089 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10000090 . A <*> 0 . END=10000099 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10000100 . T <*> 0 . END=10000100 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10000101 . T <*> 0 . END=10000104 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10000105 . T <*> 0 . END=10000105 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10000106 . T <*> 0 . END=10000116 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10000117 . C T,<*> 65.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:65:18:6,12,0:0.666667,0:65,0,74,990,990,990 20 10000118 . T <*> 0 . END=10000128 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10000129 . C <*> 0 . END=10000129 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10000130 . C <*> 0 . END=10000150 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10000151 . G <*> 0 . END=10000151 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10000152 . A <*> 0 . END=10000182 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10000183 . A <*> 0 . END=10000183 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10000184 . T <*> 0 . END=10000192 GT:GQ:MIN_DP:PL 0/0:50:21:0,72,719 20 10000193 . C <*> 0 . END=10000193 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10000194 . A <*> 0 . END=10000209 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10000210 . C <*> 0 . END=10000210 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10000211 . C T,<*> 61 PASS . GT:GQ:DP:AD:VAF:PL 0/1:60:21:7,14,0:0.666667,0:60,0,66,990,990,990 20 10000212 . A <*> 0 . END=10000273 GT:GQ:MIN_DP:PL 0/0:50:18:0,63,629 20 10000274 . A <*> 0 . END=10000274 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10000275 . A <*> 0 . END=10000333 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 20 10000334 . C <*> 0 . END=10000334 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10000335 . T <*> 0 . END=10000382 GT:GQ:MIN_DP:PL 0/0:48:24:0,75,749 20 10000383 . A <*> 0 . END=10000383 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10000384 . A <*> 0 . END=10000416 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10000417 . G <*> 0 . END=10000417 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10000418 . C <*> 0 . END=10000438 GT:GQ:MIN_DP:PL 0/0:50:27:0,54,779 20 10000439 . T G,<*> 55.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:26:1,24,0:0.923077,0:55,42,0,990,990,990 20 10000440 . T <*> 0 . END=10000452 GT:GQ:MIN_DP:PL 0/0:50:26:0,81,809 20 10000453 . C <*> 0 . END=10000453 GT:GQ:MIN_DP:PL 0/0:30:30:0,30,779 20 10000454 . C <*> 0 . END=10000492 GT:GQ:MIN_DP:PL 0/0:50:23:0,87,869 20 10000493 . T <*> 0 . END=10000493 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10000494 . C <*> 0 . END=10000508 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10000509 . A <*> 0 . END=10000509 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10000510 . C <*> 0 . END=10000513 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10000514 . C <*> 0 . END=10000514 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10000515 . G <*> 0 . END=10000516 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10000517 . G <*> 0 . END=10000517 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10000518 . A <*> 0 . END=10000590 GT:GQ:MIN_DP:PL 0/0:48:22:0,72,719 20 10000591 . C <*> 0 . END=10000592 GT:GQ:MIN_DP:PL 0/0:42:24:0,45,689 20 10000593 . C <*> 0 . END=10000593 GT:GQ:MIN_DP:PL 0/0:12:24:0,12,599 20 10000594 . A <*> 0 . END=10000597 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10000598 . T A,<*> 66.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:25:1,24,0:0.96,0:66,52,0,990,990,990 20 10000599 . T <*> 0 . END=10000611 GT:GQ:MIN_DP:PL 0/0:48:24:0,75,749 20 10000612 . A <*> 0 . END=10000612 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10000613 . A <*> 0 . END=10000637 GT:GQ:MIN_DP:PL 0/0:50:23:0,78,779 20 10000638 . G <*> 0 . END=10000638 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10000639 . G <*> 0 . END=10000641 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10000642 . G <*> 0 . END=10000642 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10000643 . C <*> 0 . END=10000693 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 20 10000694 . G A,<*> 54 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:29:19,10,0:0.344828,0:54,0,60,990,990,990 20 10000695 . G <*> 0 . END=10000757 GT:GQ:MIN_DP:PL 0/0:48:22:0,87,869 20 10000758 . T A,<*> 89.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:67:23:0,23,0:1,0:89,67,0,990,990,990 20 10000759 . A <*> 0 . END=10000766 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 20 10000767 . C <*> 0 . END=10000767 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10000768 . A <*> 0 . END=10000785 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 20 10000786 . G <*> 0 . END=10000786 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10000787 . A <*> 0 . END=10000808 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 20 10000809 . A <*> 0 . END=10000809 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10000810 . T <*> 0 . END=10000810 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10000811 . T <*> 0 . END=10000811 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10000812 . T <*> 0 . END=10000818 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000819 . A <*> 0 . END=10000821 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10000822 . T <*> 0 . END=10000823 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10000824 . T <*> 0 . END=10000824 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 20 10000825 . T <*> 0 . END=10000826 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10000827 . T <*> 0 . END=10000831 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10000832 . T <*> 0 . END=10000833 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10000834 . T <*> 0 . END=10000834 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10000835 . T <*> 0 . END=10000837 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10000838 . A <*> 0 . END=10000841 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10000842 . T <*> 0 . END=10000842 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10000843 . A <*> 0 . END=10000843 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10000844 . G <*> 0 . END=10000846 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10000847 . A <*> 0 . END=10000847 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10000848 . C <*> 0 . END=10000849 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10000850 . A <*> 0 . END=10000850 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10000851 . T <*> 0 . END=10000872 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10000873 . T <*> 0 . END=10000873 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10000874 . G <*> 0 . END=10000897 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10000898 . T <*> 0 . END=10000904 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10000905 . T <*> 0 . END=10000909 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10000910 . C <*> 0 . END=10000910 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10000911 . C <*> 0 . END=10000930 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10000931 . T <*> 0 . END=10000933 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10000934 . C <*> 0 . END=10000935 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10000936 . G <*> 0 . END=10000936 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10000937 . A <*> 0 . END=10000941 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10000942 . G <*> 0 . END=10000942 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10000943 . G <*> 0 . END=10000947 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000948 . A <*> 0 . END=10000950 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10000951 . A <*> 0 . END=10000955 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000956 . A <*> 0 . END=10000956 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10000957 . T <*> 0 . END=10000961 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000962 . G <*> 0 . END=10000962 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10000963 . T <*> 0 . END=10000976 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10000977 . T <*> 0 . END=10000977 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10000978 . T <*> 0 . END=10000978 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000979 . C <*> 0 . END=10000981 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10000982 . C <*> 0 . END=10000982 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10000983 . T <*> 0 . END=10000986 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10000987 . T <*> 0 . END=10000988 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10000989 . A <*> 0 . END=10000998 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10000999 . T <*> 0 . END=10000999 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001000 . G <*> 0 . END=10001000 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001001 . G <*> 0 . END=10001001 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10001002 . A <*> 0 . END=10001003 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001004 . T <*> 0 . END=10001010 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10001011 . C <*> 0 . END=10001012 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001013 . C <*> 0 . END=10001013 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10001014 . C <*> 0 . END=10001018 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001019 . T G,<*> 47.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:47:16:10,6,0:0.375,0:47,0,61,990,990,990 20 10001020 . C <*> 0 . END=10001032 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10001033 . C <*> 0 . END=10001033 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10001034 . T <*> 0 . END=10001036 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10001037 . A <*> 0 . END=10001038 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001039 . G <*> 0 . END=10001039 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10001040 . T <*> 0 . END=10001048 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10001049 . G <*> 0 . END=10001049 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10001050 . C <*> 0 . END=10001052 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10001053 . A <*> 0 . END=10001053 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10001054 . A <*> 0 . END=10001128 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10001129 . A <*> 0 . END=10001141 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10001142 . G <*> 0 . END=10001142 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10001143 . C <*> 0 . END=10001149 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10001150 . G <*> 0 . END=10001154 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10001155 . G <*> 0 . END=10001155 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10001156 . T <*> 0 . END=10001156 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10001157 . T <*> 0 . END=10001159 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10001160 . T <*> 0 . END=10001160 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10001161 . C <*> 0 . END=10001172 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10001173 . C <*> 0 . END=10001179 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10001180 . C <*> 0 . END=10001180 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10001181 . G <*> 0 . END=10001181 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10001182 . A <*> 0 . END=10001183 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001184 . C <*> 0 . END=10001184 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10001185 . A <*> 0 . END=10001185 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001186 . A <*> 0 . END=10001190 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10001191 . A <*> 0 . END=10001211 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10001212 . A <*> 0 . END=10001212 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10001213 . C <*> 0 . END=10001220 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10001221 . T <*> 0 . END=10001223 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10001224 . C <*> 0 . END=10001225 GT:GQ:MIN_DP:PL 0/0:30:10:0,30,299 20 10001226 . T <*> 0 . END=10001226 GT:GQ:MIN_DP:PL 0/0:3:10:0,0,239 20 10001227 . A <*> 0 . END=10001243 GT:GQ:MIN_DP:PL 0/0:30:10:0,30,299 20 10001244 . T <*> 0 . END=10001246 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10001247 . G <*> 0 . END=10001251 GT:GQ:MIN_DP:PL 0/0:27:9:0,27,269 20 10001252 . A <*> 0 . END=10001253 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10001254 . T <*> 0 . END=10001261 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10001262 . A <*> 0 . END=10001267 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10001268 . C <*> 0 . END=10001297 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001298 . T A,<*> 59.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:23:0,23,0:1,0:59,47,0,990,990,990 20 10001299 . C <*> 0 . END=10001333 GT:GQ:MIN_DP:PL 0/0:48:23:0,69,689 20 10001334 . G <*> 0 . END=10001334 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10001335 . C <*> 0 . END=10001338 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10001339 . A <*> 0 . END=10001339 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10001340 . T <*> 0 . END=10001340 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10001341 . T <*> 0 . END=10001341 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10001342 . A <*> 0 . END=10001350 GT:GQ:MIN_DP:PL 0/0:50:22:0,75,749 20 10001351 . C <*> 0 . END=10001351 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10001352 . T <*> 0 . END=10001431 GT:GQ:MIN_DP:PL 0/0:48:23:0,75,749 20 10001432 . A <*> 0 . END=10001432 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10001433 . T <*> 0 . END=10001435 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10001436 . A AAGGCT,<*> 62.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:59:25:0,23,0:0.92,0:62,61,0,990,990,990 20 10001437 . A <*> 0 . END=10001438 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10001439 . G <*> 0 . END=10001439 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10001440 . C <*> 0 . END=10001440 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10001441 . T <*> 0 . END=10001441 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10001442 . A <*> 0 . END=10001446 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10001447 . T <*> 0 . END=10001447 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10001448 . G <*> 0 . END=10001473 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10001474 . C T,<*> 71.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:22:0,22,0:1,0:71,56,0,990,990,990 20 10001475 . G <*> 0 . END=10001489 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10001490 . C <*> 0 . END=10001490 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10001491 . A <*> 0 . END=10001600 GT:GQ:MIN_DP:PL 0/0:50:18:0,72,719 20 10001601 . G <*> 0 . END=10001601 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10001602 . C <*> 0 . END=10001616 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 20 10001617 . C A,<*> 57.8 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:18:11,7,0:0.388889,0:57,0,72,990,990,990 20 10001618 . T <*> 0 . END=10001627 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10001628 . G A,<*> 70.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:61:20:0,20,0:1,0:70,61,0,990,990,990 20 10001629 . G <*> 0 . END=10001660 GT:GQ:MIN_DP:PL 0/0:48:16:0,60,599 20 10001661 . T C,<*> 66 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:16:0,16,0:1,0:65,51,0,990,990,990 20 10001662 . T <*> 0 . END=10001669 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10001670 . T G,<*> 74.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:69:18:0,18,0:1,0:74,70,0,990,990,990 20 10001671 . G <*> 0 . END=10001716 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10001717 . G <*> 0 . END=10001717 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10001718 . G <*> 0 . END=10001733 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10001734 . C <*> 0 . END=10001734 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10001735 . T <*> 0 . END=10001737 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 20 10001738 . C <*> 0 . END=10001738 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10001739 . C <*> 0 . END=10001739 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10001740 . T <*> 0 . END=10001742 GT:GQ:MIN_DP:PL 0/0:42:24:0,45,689 20 10001743 . G <*> 0 . END=10001761 GT:GQ:MIN_DP:PL 0/0:50:19:0,69,689 20 10001762 . C <*> 0 . END=10001762 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10001763 . T <*> 0 . END=10001769 GT:GQ:MIN_DP:PL 0/0:50:19:0,63,629 20 10001770 . G <*> 0 . END=10001770 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10001771 . A <*> 0 . END=10001815 GT:GQ:MIN_DP:PL 0/0:48:16:0,60,599 20 10001816 . T <*> 0 . END=10001816 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10001817 . C <*> 0 . END=10001835 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10001836 . T <*> 0 . END=10001836 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10001837 . C <*> 0 . END=10001843 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10001844 . A <*> 0 . END=10001844 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10001845 . T <*> 0 . END=10001877 GT:GQ:MIN_DP:PL 0/0:50:18:0,69,689 20 10001878 . G <*> 0 . END=10001878 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10001879 . A <*> 0 . END=10001882 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10001883 . A <*> 0 . END=10001883 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10001884 . G <*> 0 . END=10001897 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10001898 . A <*> 0 . END=10001898 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10001899 . A <*> 0 . END=10001903 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10001904 . A <*> 0 . END=10001905 GT:GQ:MIN_DP:PL 0/0:21:17:0,24,479 20 10001906 . A <*> 0 . END=10001909 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10001910 . A <*> 0 . END=10001910 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10001911 . C <*> 0 . END=10001935 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10001936 . A <*> 0 . END=10001936 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10001937 . T <*> 0 . END=10001942 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10001943 . T <*> 0 . END=10001943 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10001944 . A <*> 0 . END=10001960 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10001961 . G <*> 0 . END=10001961 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10001962 . A <*> 0 . END=10001962 GT:GQ:MIN_DP:PL ./.:0:17:8,0,398 20 10001963 . G <*> 0 . END=10001971 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001972 . G <*> 0 . END=10001972 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10001973 . G <*> 0 . END=10001975 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10001976 . T <*> 0 . END=10001976 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10001977 . T <*> 0 . END=10001988 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001989 . C <*> 0 . END=10001991 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10001992 . T <*> 0 . END=10001992 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001993 . G <*> 0 . END=10001996 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10001997 . A <*> 0 . END=10001998 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10001999 . C <*> 0 . END=10001999 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002000 . T <*> 0 . END=10002008 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002009 . A <*> 0 . END=10002009 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002010 . T <*> 0 . END=10002015 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10002016 . T <*> 0 . END=10002016 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002017 . T <*> 0 . END=10002045 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10002046 . C <*> 0 . END=10002046 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002047 . T <*> 0 . END=10002047 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002048 . G <*> 0 . END=10002052 GT:GQ:MIN_DP:PL 0/0:48:16:0,57,569 20 10002053 . C <*> 0 . END=10002053 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10002054 . A <*> 0 . END=10002054 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002055 . T <*> 0 . END=10002056 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002057 . A <*> 0 . END=10002057 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002058 . T G,<*> 99 PASS . GT:GQ:DP:AD:VAF:PL 1/1:65:18:0,18,0:1,0:99,64,0,990,990,990 20 10002059 . A <*> 0 . END=10002062 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 20 10002063 . A <*> 0 . END=10002063 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002064 . A <*> 0 . END=10002071 GT:GQ:MIN_DP:PL 0/0:48:16:0,57,569 20 10002072 . T <*> 0 . END=10002072 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002073 . T <*> 0 . END=10002076 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10002077 . C <*> 0 . END=10002077 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002078 . A <*> 0 . END=10002083 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10002084 . G <*> 0 . END=10002084 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002085 . A <*> 0 . END=10002085 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002086 . G <*> 0 . END=10002086 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10002087 . G <*> 0 . END=10002087 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002088 . C <*> 0 . END=10002088 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002089 . A <*> 0 . END=10002091 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10002092 . G <*> 0 . END=10002092 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002093 . T <*> 0 . END=10002098 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10002099 . C T,<*> 65.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:63:17:6,11,0:0.647059,0:65,0,65,990,990,990 20 10002100 . T <*> 0 . END=10002120 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10002121 . C <*> 0 . END=10002121 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002122 . A <*> 0 . END=10002122 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10002123 . T <*> 0 . END=10002124 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002125 . T <*> 0 . END=10002125 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002126 . G <*> 0 . END=10002127 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002128 . T <*> 0 . END=10002128 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002129 . G <*> 0 . END=10002131 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002132 . T <*> 0 . END=10002135 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10002136 . T <*> 0 . END=10002136 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002137 . G <*> 0 . END=10002137 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002138 . C G,<*> 99 PASS . GT:GQ:DP:AD:VAF:PL 1/1:65:15:0,15,0:1,0:99,65,0,990,990,990 20 10002139 . A <*> 0 . END=10002139 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002140 . C <*> 0 . END=10002141 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002142 . G C,<*> 75.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:60:15:0,13,0:0.866667,0:75,60,0,990,990,990 20 10002143 . T <*> 0 . END=10002143 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002144 . A <*> 0 . END=10002145 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002146 . C <*> 0 . END=10002146 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002147 . T <*> 0 . END=10002149 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002150 . C <*> 0 . END=10002150 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002151 . A <*> 0 . END=10002153 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002154 . C <*> 0 . END=10002155 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002156 . T <*> 0 . END=10002158 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10002159 . C <*> 0 . END=10002162 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10002163 . G <*> 0 . END=10002163 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002164 . T <*> 0 . END=10002166 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002167 . G <*> 0 . END=10002167 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002168 . T <*> 0 . END=10002168 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002169 . G <*> 0 . END=10002169 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10002170 . G <*> 0 . END=10002170 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10002171 . G <*> 0 . END=10002178 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10002179 . G <*> 0 . END=10002179 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10002180 . G <*> 0 . END=10002181 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002182 . C <*> 0 . END=10002182 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002183 . A <*> 0 . END=10002188 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002189 . A <*> 0 . END=10002189 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002190 . T <*> 0 . END=10002197 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002198 . G <*> 0 . END=10002198 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002199 . A <*> 0 . END=10002203 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002204 . G <*> 0 . END=10002207 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10002208 . G <*> 0 . END=10002209 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10002210 . C <*> 0 . END=10002210 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002211 . T <*> 0 . END=10002211 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002212 . G <*> 0 . END=10002212 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002213 . T <*> 0 . END=10002214 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002215 . A <*> 0 . END=10002215 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10002216 . G <*> 0 . END=10002216 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002217 . C <*> 0 . END=10002217 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002218 . T <*> 0 . END=10002221 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10002222 . A <*> 0 . END=10002222 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002223 . G <*> 0 . END=10002223 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002224 . C <*> 0 . END=10002229 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002230 . C <*> 0 . END=10002230 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002231 . A <*> 0 . END=10002237 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10002238 . G <*> 0 . END=10002238 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002239 . C <*> 0 . END=10002239 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002240 . A <*> 0 . END=10002243 GT:GQ:MIN_DP:PL 0/0:50:18:0,66,659 20 10002244 . G <*> 0 . END=10002244 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002245 . G <*> 0 . END=10002252 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 20 10002253 . C <*> 0 . END=10002253 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002254 . A <*> 0 . END=10002262 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 20 10002263 . A <*> 0 . END=10002264 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002265 . G <*> 0 . END=10002279 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10002280 . C <*> 0 . END=10002280 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002281 . T <*> 0 . END=10002319 GT:GQ:MIN_DP:PL 0/0:50:19:0,66,659 20 10002320 . A <*> 0 . END=10002320 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10002321 . T <*> 0 . END=10002350 GT:GQ:MIN_DP:PL 0/0:50:23:0,72,719 20 10002351 . A <*> 0 . END=10002351 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10002352 . T <*> 0 . END=10002368 GT:GQ:MIN_DP:PL 0/0:50:19:0,69,689 20 10002369 . C <*> 0 . END=10002369 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002370 . T <*> 0 . END=10002373 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10002374 . G <*> 0 . END=10002374 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002375 . C <*> 0 . END=10002386 GT:GQ:MIN_DP:PL 0/0:48:16:0,57,569 20 10002387 . A <*> 0 . END=10002392 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10002393 . G <*> 0 . END=10002393 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002394 . C <*> 0 . END=10002395 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002396 . G <*> 0 . END=10002396 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10002397 . G <*> 0 . END=10002397 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002398 . T <*> 0 . END=10002398 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10002399 . T <*> 0 . END=10002414 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002415 . A <*> 0 . END=10002429 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002430 . C <*> 0 . END=10002440 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002441 . C <*> 0 . END=10002444 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002445 . C <*> 0 . END=10002445 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002446 . T <*> 0 . END=10002446 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10002447 . G <*> 0 . END=10002447 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002448 . A <*> 0 . END=10002448 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 20 10002449 . T <*> 0 . END=10002449 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10002450 . G <*> 0 . END=10002453 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002454 . G <*> 0 . END=10002456 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10002457 . A <*> 0 . END=10002457 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 20 10002458 . G GTT,GTTT,<*> 63.7 PASS . GT:GQ:DP:AD:VAF:PL 1/2:35:16:0,6,9,0:0.375,0.5625,0:63,41,50,41,0,36,990,990,990,990 20 10002459 . T <*> 0 . END=10002466 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002467 . T <*> 0 . END=10002469 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10002470 . C T,<*> 63.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:45:14:0,14,0:1,0:63,45,0,990,990,990 20 10002471 . T <*> 0 . END=10002476 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10002477 . T <*> 0 . END=10002477 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002478 . A <*> 0 . END=10002479 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002480 . G <*> 0 . END=10002480 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002481 . A <*> 0 . END=10002481 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002482 . G <*> 0 . END=10002482 GT:GQ:MIN_DP:PL ./.:0:17:8,0,398 20 10002483 . A <*> 0 . END=10002483 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002484 . T <*> 0 . END=10002484 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002485 . G <*> 0 . END=10002486 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10002487 . G <*> 0 . END=10002487 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002488 . G <*> 0 . END=10002490 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10002491 . T <*> 0 . END=10002491 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002492 . C <*> 0 . END=10002492 GT:GQ:MIN_DP:PL ./.:0:18:5,0,425 20 10002493 . A <*> 0 . END=10002493 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10002494 . C <*> 0 . END=10002495 GT:GQ:MIN_DP:PL 0/0:21:17:0,24,479 20 10002496 . A <*> 0 . END=10002496 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002497 . T <*> 0 . END=10002497 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002498 . G <*> 0 . END=10002498 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002499 . T <*> 0 . END=10002500 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10002501 . G <*> 0 . END=10002501 GT:GQ:MIN_DP:PL ./.:1:19:2,0,452 20 10002502 . G <*> 0 . END=10002506 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10002507 . G <*> 0 . END=10002507 GT:GQ:MIN_DP:PL ./.:0:19:32,0,422 20 10002508 . C <*> 0 . END=10002508 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002509 . T <*> 0 . END=10002510 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10002511 . G <*> 0 . END=10002511 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002512 . T <*> 0 . END=10002512 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10002513 . C <*> 0 . END=10002513 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002514 . G <*> 0 . END=10002514 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002515 . T <*> 0 . END=10002515 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10002516 . G <*> 0 . END=10002516 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002517 . A <*> 0 . END=10002517 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10002518 . A <*> 0 . END=10002518 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002519 . C <*> 0 . END=10002519 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10002520 . T <*> 0 . END=10002520 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002521 . C <*> 0 . END=10002523 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10002524 . G <*> 0 . END=10002525 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002526 . C <*> 0 . END=10002526 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10002527 . C <*> 0 . END=10002527 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002528 . T <*> 0 . END=10002532 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 20 10002533 . G <*> 0 . END=10002533 GT:GQ:MIN_DP:PL 0/0:3:20:0,0,479 20 10002534 . G <*> 0 . END=10002538 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10002539 . C <*> 0 . END=10002539 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002540 . C <*> 0 . END=10002540 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002541 . A <*> 0 . END=10002541 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002542 . A <*> 0 . END=10002544 GT:GQ:MIN_DP:PL 0/0:50:19:0,63,629 20 10002545 . T <*> 0 . END=10002546 GT:GQ:MIN_DP:PL 0/0:27:19:0,30,539 20 10002547 . T <*> 0 . END=10002551 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10002552 . A <*> 0 . END=10002553 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002554 . T <*> 0 . END=10002554 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10002555 . A <*> 0 . END=10002555 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10002556 . C <*> 0 . END=10002558 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10002559 . A <*> 0 . END=10002559 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10002560 . C <*> 0 . END=10002572 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10002573 . G <*> 0 . END=10002573 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002574 . C <*> 0 . END=10002579 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10002580 . C <*> 0 . END=10002580 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002581 . A <*> 0 . END=10002585 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10002586 . T <*> 0 . END=10002586 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10002587 . T <*> 0 . END=10002592 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 20 10002593 . C <*> 0 . END=10002593 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002594 . C <*> 0 . END=10002594 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10002595 . T <*> 0 . END=10002596 GT:GQ:MIN_DP:PL 0/0:50:23:0,72,719 20 10002597 . A <*> 0 . END=10002597 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002598 . A <*> 0 . END=10002598 GT:GQ:MIN_DP:PL 0/0:7:22:0,6,539 20 10002599 . G <*> 0 . END=10002599 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10002600 . A <*> 0 . END=10002600 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002601 . A <*> 0 . END=10002603 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10002604 . G <*> 0 . END=10002604 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002605 . A <*> 0 . END=10002616 GT:GQ:MIN_DP:PL 0/0:50:19:0,63,629 20 10002617 . A <*> 0 . END=10002618 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10002619 . A <*> 0 . END=10002620 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10002621 . T <*> 0 . END=10002621 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10002622 . T <*> 0 . END=10002622 GT:GQ:MIN_DP:PL 0/0:9:23:0,9,569 20 10002623 . T <*> 0 . END=10002623 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10002624 . A <*> 0 . END=10002624 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002625 . G T,<*> 64.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:22:0,22,0:1,0:64,56,0,990,990,990 20 10002626 . G <*> 0 . END=10002635 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10002636 . C <*> 0 . END=10002636 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002637 . A <*> 0 . END=10002656 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 20 10002657 . C <*> 0 . END=10002657 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002658 . A <*> 0 . END=10002667 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 20 10002668 . G <*> 0 . END=10002668 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002669 . T <*> 0 . END=10002672 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10002673 . A <*> 0 . END=10002673 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002674 . A <*> 0 . END=10002679 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10002680 . T <*> 0 . END=10002680 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10002681 . C <*> 0 . END=10002722 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10002723 . T <*> 0 . END=10002724 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002725 . C <*> 0 . END=10002744 GT:GQ:MIN_DP:PL 0/0:50:17:0,60,599 20 10002745 . C <*> 0 . END=10002745 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002746 . C <*> 0 . END=10002749 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10002750 . A <*> 0 . END=10002750 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002751 . T <*> 0 . END=10002764 GT:GQ:MIN_DP:PL 0/0:50:17:0,60,599 20 10002765 . T <*> 0 . END=10002766 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002767 . T <*> 0 . END=10002775 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10002776 . C <*> 0 . END=10002778 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002779 . A <*> 0 . END=10002779 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10002780 . G <*> 0 . END=10002780 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002781 . G <*> 0 . END=10002811 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10002812 . C <*> 0 . END=10002812 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10002813 . T <*> 0 . END=10002818 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10002819 . A <*> 0 . END=10002819 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10002820 . A <*> 0 . END=10002828 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10002829 . A <*> 0 . END=10002829 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10002830 . A <*> 0 . END=10002936 GT:GQ:MIN_DP:PL 0/0:50:18:0,66,659 20 10002937 . A <*> 0 . END=10002937 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002938 . A <*> 0 . END=10002944 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10002945 . C <*> 0 . END=10002946 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10002947 . A <*> 0 . END=10002956 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 20 10002957 . G <*> 0 . END=10002957 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002958 . T <*> 0 . END=10002965 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10002966 . G <*> 0 . END=10002966 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10002967 . T <*> 0 . END=10002985 GT:GQ:MIN_DP:PL 0/0:48:16:0,60,599 20 10002986 . G <*> 0 . END=10002986 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10002987 . C <*> 0 . END=10002987 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002988 . T <*> 0 . END=10002988 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10002989 . G <*> 0 . END=10002989 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10002990 . A <*> 0 . END=10002999 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10003000 . A <*> 0 . END=10003001 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10003002 . C <*> 0 . END=10003002 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003003 . T <*> 0 . END=10003005 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10003006 . G <*> 0 . END=10003006 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10003007 . C <*> 0 . END=10003010 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003011 . G <*> 0 . END=10003011 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10003012 . C <*> 0 . END=10003012 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003013 . A <*> 0 . END=10003013 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003014 . G <*> 0 . END=10003014 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10003015 . G <*> 0 . END=10003020 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003021 . C T,<*> 67 PASS . GT:GQ:DP:AD:VAF:PL 1/1:54:17:0,17,0:1,0:66,54,0,990,990,990 20 10003022 . G <*> 0 . END=10003026 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10003027 . T <*> 0 . END=10003027 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003028 . G <*> 0 . END=10003029 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10003030 . C <*> 0 . END=10003030 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003031 . T <*> 0 . END=10003033 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10003034 . G <*> 0 . END=10003034 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10003035 . G <*> 0 . END=10003049 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10003050 . A <*> 0 . END=10003050 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10003051 . G <*> 0 . END=10003059 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003060 . A <*> 0 . END=10003065 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003066 . C <*> 0 . END=10003066 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10003067 . T <*> 0 . END=10003070 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003071 . C <*> 0 . END=10003078 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10003079 . G <*> 0 . END=10003084 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003085 . G <*> 0 . END=10003088 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10003089 . G <*> 0 . END=10003090 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10003091 . A <*> 0 . END=10003102 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10003103 . T <*> 0 . END=10003103 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10003104 . T <*> 0 . END=10003107 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003108 . C <*> 0 . END=10003109 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10003110 . C <*> 0 . END=10003116 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10003117 . G <*> 0 . END=10003117 GT:GQ:MIN_DP:PL 0/0:30:10:0,30,299 20 10003118 . C <*> 0 . END=10003119 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10003120 . G <*> 0 . END=10003124 GT:GQ:MIN_DP:PL 0/0:27:9:0,30,299 20 10003125 . G <*> 0 . END=10003125 GT:GQ:MIN_DP:PL 0/0:24:8:0,24,239 20 10003126 . C <*> 0 . END=10003127 GT:GQ:MIN_DP:PL 0/0:27:9:0,27,269 20 10003128 . A <*> 0 . END=10003129 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10003130 . T <*> 0 . END=10003140 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10003141 . A <*> 0 . END=10003159 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003160 . G <*> 0 . END=10003185 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10003186 . A <*> 0 . END=10003186 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10003187 . C <*> 0 . END=10003200 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10003201 . C <*> 0 . END=10003209 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003210 . C <*> 0 . END=10003229 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003230 . G <*> 0 . END=10003230 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10003231 . A <*> 0 . END=10003265 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10003266 . A <*> 0 . END=10003266 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10003267 . C <*> 0 . END=10003310 GT:GQ:MIN_DP:PL 0/0:48:16:0,60,599 20 10003311 . A <*> 0 . END=10003311 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10003312 . A <*> 0 . END=10003322 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10003323 . C <*> 0 . END=10003323 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10003324 . C <*> 0 . END=10003335 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10003336 . C <*> 0 . END=10003336 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003337 . T <*> 0 . END=10003338 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003339 . C <*> 0 . END=10003339 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10003340 . C <*> 0 . END=10003340 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003341 . A <*> 0 . END=10003343 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003344 . C <*> 0 . END=10003344 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10003345 . C <*> 0 . END=10003354 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003355 . A <*> 0 . END=10003355 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003356 . C <*> 0 . END=10003357 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003358 . A C,<*> 50.4 PASS . GT:GQ:DP:AD:VAF:PL 0/1:50:16:12,4,0:0.25,0:50,0,66,990,990,990 20 10003359 . C <*> 0 . END=10003360 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003361 . G <*> 0 . END=10003363 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003364 . G <*> 0 . END=10003364 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003365 . A <*> 0 . END=10003365 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003366 . G <*> 0 . END=10003366 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10003367 . G <*> 0 . END=10003368 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003369 . G <*> 0 . END=10003369 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003370 . A <*> 0 . END=10003370 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003371 . T <*> 0 . END=10003371 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10003372 . G <*> 0 . END=10003372 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003373 . C <*> 0 . END=10003374 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003375 . A <*> 0 . END=10003375 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003376 . C <*> 0 . END=10003376 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003377 . A <*> 0 . END=10003377 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003378 . G <*> 0 . END=10003378 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003379 . T <*> 0 . END=10003379 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10003380 . C <*> 0 . END=10003382 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003383 . T <*> 0 . END=10003383 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10003384 . A <*> 0 . END=10003386 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003387 . A <*> 0 . END=10003389 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10003390 . G <*> 0 . END=10003390 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10003391 . T <*> 0 . END=10003394 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10003395 . C <*> 0 . END=10003397 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003398 . G <*> 0 . END=10003399 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10003400 . C <*> 0 . END=10003418 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003419 . G <*> 0 . END=10003419 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10003420 . T <*> 0 . END=10003421 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003422 . T <*> 0 . END=10003422 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10003423 . T <*> 0 . END=10003424 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003425 . C <*> 0 . END=10003453 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10003454 . A <*> 0 . END=10003456 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10003457 . C <*> 0 . END=10003466 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10003467 . T <*> 0 . END=10003477 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003478 . C <*> 0 . END=10003501 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003502 . G <*> 0 . END=10003502 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10003503 . C <*> 0 . END=10003506 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10003507 . G <*> 0 . END=10003508 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10003509 . A <*> 0 . END=10003512 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10003513 . G <*> 0 . END=10003513 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10003514 . A <*> 0 . END=10003514 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10003515 . A <*> 0 . END=10003515 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10003516 . T <*> 0 . END=10003516 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10003517 . G <*> 0 . END=10003518 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10003519 . C <*> 0 . END=10003522 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10003523 . G <*> 0 . END=10003523 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10003524 . A <*> 0 . END=10003528 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10003529 . C <*> 0 . END=10003529 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10003530 . A <*> 0 . END=10003535 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10003536 . A <*> 0 . END=10003536 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10003537 . T <*> 0 . END=10003547 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10003548 . G <*> 0 . END=10003548 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10003549 . A <*> 0 . END=10003556 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10003557 . G <*> 0 . END=10003557 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10003558 . A <*> 0 . END=10003558 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10003559 . G <*> 0 . END=10003559 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10003560 . C <*> 0 . END=10003570 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10003571 . T <*> 0 . END=10003571 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10003572 . T <*> 0 . END=10003574 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10003575 . T <*> 0 . END=10003575 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10003576 . C <*> 0 . END=10003583 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10003584 . G <*> 0 . END=10003584 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10003585 . C <*> 0 . END=10003602 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10003603 . T <*> 0 . END=10003603 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10003604 . T <*> 0 . END=10003609 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 20 10003610 . G <*> 0 . END=10003610 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10003611 . C <*> 0 . END=10003615 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10003616 . G <*> 0 . END=10003616 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10003617 . T <*> 0 . END=10003621 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 20 10003622 . G <*> 0 . END=10003623 GT:GQ:MIN_DP:PL 0/0:27:19:0,30,539 20 10003624 . A <*> 0 . END=10003640 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10003641 . G <*> 0 . END=10003641 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10003642 . C <*> 0 . END=10003650 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 20 10003651 . T C,<*> 64.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:16:0,16,0:1,0:64,49,0,990,990,990 20 10003652 . C <*> 0 . END=10003654 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003655 . C <*> 0 . END=10003662 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10003663 . T <*> 0 . END=10003663 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003664 . G <*> 0 . END=10003664 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003665 . G <*> 0 . END=10003665 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003666 . T <*> 0 . END=10003666 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003667 . T <*> 0 . END=10003672 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003673 . T <*> 0 . END=10003687 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10003688 . A <*> 0 . END=10003688 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003689 . T <*> 0 . END=10003689 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10003690 . C <*> 0 . END=10003691 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10003692 . A G,<*> 66.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:13:0,13,0:1,0:66,47,0,990,990,990 20 10003693 . T <*> 0 . END=10003699 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10003700 . A <*> 0 . END=10003703 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10003704 . T <*> 0 . END=10003706 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10003707 . A <*> 0 . END=10003712 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10003713 . C <*> 0 . END=10003713 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10003714 . A <*> 0 . END=10003731 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10003732 . C <*> 0 . END=10003732 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10003733 . T <*> 0 . END=10003765 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10003766 . A <*> 0 . END=10003766 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10003767 . C <*> 0 . END=10003772 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10003773 . A <*> 0 . END=10003773 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10003774 . G <*> 0 . END=10003804 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10003805 . A <*> 0 . END=10003805 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10003806 . G <*> 0 . END=10003816 GT:GQ:MIN_DP:PL 0/0:50:23:0,72,719 20 10003817 . A <*> 0 . END=10003817 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10003818 . G <*> 0 . END=10003824 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10003825 . G <*> 0 . END=10003825 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10003826 . C <*> 0 . END=10003831 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10003832 . G A,<*> 67.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:63:27:0,27,0:1,0:67,64,0,990,990,990 20 10003833 . T <*> 0 . END=10003850 GT:GQ:MIN_DP:PL 0/0:50:25:0,78,779 20 10003851 . T <*> 0 . END=10003852 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10003853 . G <*> 0 . END=10003853 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10003854 . T <*> 0 . END=10003854 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10003855 . T <*> 0 . END=10003860 GT:GQ:MIN_DP:PL 0/0:50:20:0,72,719 20 10003861 . A <*> 0 . END=10003861 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10003862 . A <*> 0 . END=10003862 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10003863 . G <*> 0 . END=10003863 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10003864 . C <*> 0 . END=10003864 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10003865 . C <*> 0 . END=10003865 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10003866 . A <*> 0 . END=10003866 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10003867 . A <*> 0 . END=10003867 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10003868 . T <*> 0 . END=10003874 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10003875 . A <*> 0 . END=10003875 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10003876 . T <*> 0 . END=10003948 GT:GQ:MIN_DP:PL 0/0:50:22:0,72,719 20 10003949 . T <*> 0 . END=10003949 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10003950 . G <*> 0 . END=10003967 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10003968 . T <*> 0 . END=10003968 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10003969 . G <*> 0 . END=10003981 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10003982 . T <*> 0 . END=10003982 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10003983 . G <*> 0 . END=10003999 GT:GQ:MIN_DP:PL 0/0:50:18:0,63,629 20 10004000 . G <*> 0 . END=10004036 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10004037 . T <*> 0 . END=10004037 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004038 . A <*> 0 . END=10004038 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10004039 . T <*> 0 . END=10004039 GT:GQ:MIN_DP:PL ./.:0:16:11,0,371 20 10004040 . G <*> 0 . END=10004040 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004041 . G <*> 0 . END=10004044 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10004045 . A <*> 0 . END=10004045 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004046 . A <*> 0 . END=10004046 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10004047 . C <*> 0 . END=10004047 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004048 . C <*> 0 . END=10004049 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004050 . C <*> 0 . END=10004050 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004051 . G <*> 0 . END=10004054 GT:GQ:MIN_DP:PL 0/0:36:12:0,39,389 20 10004055 . C <*> 0 . END=10004055 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 20 10004056 . T <*> 0 . END=10004056 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10004057 . A <*> 0 . END=10004057 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 20 10004058 . C <*> 0 . END=10004058 GT:GQ:MIN_DP:PL 0/0:30:10:0,30,299 20 10004059 . T <*> 0 . END=10004059 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10004060 . A <*> 0 . END=10004061 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004062 . A <*> 0 . END=10004062 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004063 . A <*> 0 . END=10004063 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004064 . A <*> 0 . END=10004064 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004065 . T <*> 0 . END=10004071 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10004072 . A <*> 0 . END=10004073 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 20 10004074 . T <*> 0 . END=10004074 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004075 . A <*> 0 . END=10004076 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004077 . C <*> 0 . END=10004077 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10004078 . T <*> 0 . END=10004079 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004080 . G <*> 0 . END=10004081 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004082 . C <*> 0 . END=10004082 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004083 . A <*> 0 . END=10004083 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004084 . T <*> 0 . END=10004085 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10004086 . G <*> 0 . END=10004092 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004093 . G <*> 0 . END=10004093 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10004094 . A C,<*> 69.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:51:13:0,13,0:1,0:69,51,0,990,990,990 20 10004095 . C <*> 0 . END=10004102 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10004103 . T <*> 0 . END=10004104 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10004105 . C <*> 0 . END=10004105 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004106 . C <*> 0 . END=10004106 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10004107 . A <*> 0 . END=10004108 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10004109 . C <*> 0 . END=10004109 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004110 . T <*> 0 . END=10004110 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004111 . A <*> 0 . END=10004111 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004112 . C <*> 0 . END=10004112 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004113 . T <*> 0 . END=10004113 GT:GQ:MIN_DP:PL ./.:0:16:11,0,371 20 10004114 . C G,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:99:15:13,2,0:0.133333,0:0,73,99,990,990,990 20 10004115 . A <*> 0 . END=10004115 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004116 . G <*> 0 . END=10004116 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10004117 . G <*> 0 . END=10004117 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004118 . A <*> 0 . END=10004119 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10004120 . G <*> 0 . END=10004120 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10004121 . C <*> 0 . END=10004121 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10004122 . T <*> 0 . END=10004122 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004123 . G <*> 0 . END=10004125 GT:GQ:MIN_DP:PL 0/0:48:16:0,57,569 20 10004126 . G <*> 0 . END=10004126 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004127 . C <*> 0 . END=10004127 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004128 . AG A,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:69:18:15,2,0:0.111111,0:0,67,99,990,990,990 20 10004130 . G <*> 0 . END=10004131 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10004132 . G <*> 0 . END=10004132 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10004133 . A <*> 0 . END=10004133 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10004134 . A <*> 0 . END=10004134 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10004135 . T <*> 0 . END=10004135 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004136 . C <*> 0 . END=10004137 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004138 . C <*> 0 . END=10004138 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10004139 . T <*> 0 . END=10004140 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004141 . G <*> 0 . END=10004143 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004144 . C <*> 0 . END=10004144 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004145 . C <*> 0 . END=10004146 GT:GQ:MIN_DP:PL 0/0:12:14:0,15,389 20 10004147 . A G,<*> 70.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:59:15:0,15,0:1,0:70,59,0,990,990,990 20 10004148 . G <*> 0 . END=10004148 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004149 . G <*> 0 . END=10004149 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004150 . A <*> 0 . END=10004150 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004151 . G <*> 0 . END=10004152 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004153 . C <*> 0 . END=10004153 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10004154 . G <*> 0 . END=10004154 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004155 . G <*> 0 . END=10004155 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10004156 . A <*> 0 . END=10004156 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10004157 . G <*> 0 . END=10004157 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004158 . G <*> 0 . END=10004158 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004159 . T <*> 0 . END=10004159 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 20 10004160 . T <*> 0 . END=10004160 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004161 . G <*> 0 . END=10004161 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10004162 . C <*> 0 . END=10004162 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10004163 . A <*> 0 . END=10004163 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004164 . G <*> 0 . END=10004164 GT:GQ:MIN_DP:PL ./.:0:13:20,0,290 20 10004165 . T <*> 0 . END=10004166 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10004167 . A <*> 0 . END=10004167 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 20 10004168 . G <*> 0 . END=10004168 GT:GQ:MIN_DP:PL 0/0:33:11:0,33,329 20 10004169 . C <*> 0 . END=10004170 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004171 . G <*> 0 . END=10004171 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004172 . A <*> 0 . END=10004172 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004173 . G <*> 0 . END=10004173 GT:GQ:MIN_DP:PL ./.:0:16:11,0,371 20 10004174 . A <*> 0 . END=10004174 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004175 . T <*> 0 . END=10004175 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004176 . C <*> 0 . END=10004176 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004177 . A <*> 0 . END=10004177 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 20 10004178 . C <*> 0 . END=10004178 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10004179 . G <*> 0 . END=10004180 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10004181 . C <*> 0 . END=10004181 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10004182 . A <*> 0 . END=10004182 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004183 . C <*> 0 . END=10004184 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004185 . G <*> 0 . END=10004185 GT:GQ:MIN_DP:PL ./.:0:13:20,0,290 20 10004186 . C <*> 0 . END=10004186 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004187 . A C,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:67:16:14,2,0:0.125,0:0,65,99,990,990,990 20 10004188 . C <*> 0 . END=10004188 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004189 . T <*> 0 . END=10004189 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10004190 . C <*> 0 . END=10004190 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004191 . C <*> 0 . END=10004191 GT:GQ:MIN_DP:PL ./.:0:14:17,0,317 20 10004192 . AG A,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:69:16:14,2,0:0.125,0:0,70,75,990,990,990 20 10004193 . G T,<*> 60.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:58:14:5,8,0:0.571429,0:60,0,63,990,990,990 20 10004194 . C <*> 0 . END=10004194 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004195 . C <*> 0 . END=10004195 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004196 . T <*> 0 . END=10004196 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004197 . G <*> 0 . END=10004197 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10004198 . G <*> 0 . END=10004198 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10004199 . C <*> 0 . END=10004199 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10004200 . C <*> 0 . END=10004200 GT:GQ:MIN_DP:PL ./.:0:15:14,0,344 20 10004201 . G <*> 0 . END=10004201 GT:GQ:MIN_DP:PL ./.:0:14:17,0,317 20 10004202 . A C,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:99:16:14,2,0:0.125,0:0,72,99,990,990,990 20 10004203 . C A,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:99:13:11,2,0:0.153846,0:0,96,99,990,990,990 20 10004204 . A <*> 0 . END=10004204 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10004205 . G <*> 0 . END=10004205 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004206 . A <*> 0 . END=10004206 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004207 . G <*> 0 . END=10004207 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10004208 . T <*> 0 . END=10004208 GT:GQ:MIN_DP:PL ./.:0:16:11,0,371 20 10004209 . G <*> 0 . END=10004209 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004210 . A <*> 0 . END=10004212 GT:GQ:MIN_DP:PL 0/0:12:14:0,12,359 20 10004213 . T <*> 0 . END=10004214 GT:GQ:MIN_DP:PL 0/0:39:13:0,39,389 20 10004215 . C <*> 0 . END=10004215 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 20 10004216 . T <*> 0 . END=10004216 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004217 . G <*> 0 . END=10004217 GT:GQ:MIN_DP:PL 0/0:7:12:0,6,299 20 10004218 . T <*> 0 . END=10004218 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004219 . C <*> 0 . END=10004219 GT:GQ:MIN_DP:PL 0/0:9:13:0,9,329 20 10004220 . T <*> 0 . END=10004220 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004221 . C CA,<*> 0 RefCall . GT:GQ:DP:AD:VAF:PL 0/0:38:16:14,2,0:0.125,0:0,38,53,990,990,990 20 10004222 . C CA,CAA,<*> 22.9 PASS . GT:GQ:DP:AD:VAF:PL 0/1:3:17:11,1,1,0:0.0588235,0.0588235,0:20,0,39,0,39,39,990,990,990,990 20 10004223 . A AG,<*> 49 PASS . GT:GQ:DP:AD:VAF:PL 0/1:45:17:9,7,0:0.411765,0:48,0,46,990,990,990 20 10004224 . A <*> 0 . END=10004224 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10004225 . A <*> 0 . END=10004228 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10004229 . A <*> 0 . END=10004229 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10004230 . A <*> 0 . END=10004235 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004236 . A <*> 0 . END=10004239 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10004240 . A <*> 0 . END=10004241 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10004242 . A <*> 0 . END=10004243 GT:GQ:MIN_DP:PL 0/0:42:14:0,42,419 20 10004244 . G <*> 0 . END=10004244 GT:GQ:MIN_DP:PL 0/0:36:12:0,36,359 20 10004245 . T <*> 0 . END=10004249 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10004250 . A <*> 0 . END=10004251 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004252 . T <*> 0 . END=10004252 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004253 . A <*> 0 . END=10004253 GT:GQ:MIN_DP:PL 0/0:15:15:0,15,389 20 10004254 . T <*> 0 . END=10004257 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004258 . T <*> 0 . END=10004270 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004271 . C <*> 0 . END=10004273 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004274 . T <*> 0 . END=10004276 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004277 . G <*> 0 . END=10004277 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004278 . T <*> 0 . END=10004282 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004283 . T <*> 0 . END=10004289 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10004290 . T <*> 0 . END=10004321 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004322 . A <*> 0 . END=10004322 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004323 . T <*> 0 . END=10004333 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10004334 . G <*> 0 . END=10004334 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004335 . C <*> 0 . END=10004350 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10004351 . C G,<*> 76.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:65:20:0,20,0:1,0:76,65,0,990,990,990 20 10004352 . A <*> 0 . END=10004384 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 20 10004385 . T <*> 0 . END=10004385 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10004386 . A <*> 0 . END=10004388 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10004389 . T G,<*> 70.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:61:22:0,22,0:1,0:70,62,0,990,990,990 20 10004390 . G <*> 0 . END=10004393 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10004394 . C <*> 0 . END=10004394 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10004395 . A <*> 0 . END=10004439 GT:GQ:MIN_DP:PL 0/0:50:19:0,66,659 20 10004440 . T <*> 0 . END=10004440 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10004441 . C <*> 0 . END=10004464 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10004465 . C <*> 0 . END=10004465 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10004466 . T <*> 0 . END=10004575 GT:GQ:MIN_DP:PL 0/0:48:16:0,63,629 20 10004576 . T <*> 0 . END=10004576 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10004577 . T <*> 0 . END=10004580 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10004581 . T <*> 0 . END=10004581 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10004582 . T <*> 0 . END=10004608 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10004609 . C <*> 0 . END=10004609 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10004610 . A C,<*> 64.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:18:0,18,0:1,0:64,48,0,990,990,990 20 10004611 . C <*> 0 . END=10004639 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10004640 . T <*> 0 . END=10004640 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10004641 . T <*> 0 . END=10004680 GT:GQ:MIN_DP:PL 0/0:50:18:0,63,629 20 10004681 . A <*> 0 . END=10004681 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10004682 . G <*> 0 . END=10004724 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10004725 . A G,<*> 60.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:57:21:7,14,0:0.666667,0:60,0,59,990,990,990 20 10004726 . T <*> 0 . END=10004767 GT:GQ:MIN_DP:PL 0/0:50:19:0,63,629 20 10004768 . C <*> 0 . END=10004768 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10004769 . TAAAACTATGC T,<*> 52.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:53:22:8,14,0:0.636364,0:52,0,66,990,990,990 20 10004780 . A <*> 0 . END=10004802 GT:GQ:MIN_DP:PL 0/0:50:21:0,72,719 20 10004803 . T <*> 0 . END=10004803 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10004804 . T <*> 0 . END=10004805 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10004806 . T <*> 0 . END=10004806 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10004807 . G <*> 0 . END=10004856 GT:GQ:MIN_DP:PL 0/0:48:22:0,72,719 20 10004857 . C <*> 0 . END=10004857 GT:GQ:MIN_DP:PL 0/0:36:32:0,36,839 20 10004858 . A <*> 0 . END=10004873 GT:GQ:MIN_DP:PL 0/0:50:29:0,96,959 20 10004874 . A C,<*> 99 PASS . GT:GQ:DP:AD:VAF:PL 1/1:99:32:0,32,0:1,0:99,75,0,990,990,990 20 10004875 . T <*> 0 . END=10004886 GT:GQ:MIN_DP:PL 0/0:50:30:0,96,959 20 10004887 . A G,<*> 67.5 PASS . GT:GQ:DP:AD:VAF:PL 0/1:67:30:16,14,0:0.466667,0:66,0,99,990,990,990 20 10004888 . A <*> 0 . END=10004942 GT:GQ:MIN_DP:PL 0/0:50:23:0,93,929 20 10004943 . C <*> 0 . END=10004943 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10004944 . T <*> 0 . END=10004946 GT:GQ:MIN_DP:PL 0/0:50:23:0,72,719 20 10004947 . G <*> 0 . END=10004947 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10004948 . A <*> 0 . END=10004950 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10004951 . G <*> 0 . END=10004951 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10004952 . T <*> 0 . END=10004963 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10004964 . T <*> 0 . END=10004964 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10004965 . A <*> 0 . END=10004999 GT:GQ:MIN_DP:PL 0/0:50:23:0,78,779 20 10005000 . G <*> 0 . END=10005009 GT:GQ:MIN_DP:PL 0/0:50:25:0,81,809 20 10005010 . C T,<*> 65.2 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:25:0,25,0:1,0:65,56,0,990,990,990 20 10005011 . G <*> 0 . END=10005034 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 20 10005035 . C <*> 0 . END=10005035 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10005036 . A <*> 0 . END=10005039 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10005040 . G <*> 0 . END=10005040 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10005041 . T <*> 0 . END=10005041 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 20 10005042 . C <*> 0 . END=10005042 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10005043 . A <*> 0 . END=10005043 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10005044 . T <*> 0 . END=10005044 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10005045 . G <*> 0 . END=10005087 GT:GQ:MIN_DP:PL 0/0:48:25:0,75,749 20 10005088 . C <*> 0 . END=10005088 GT:GQ:MIN_DP:PL 0/0:36:32:0,36,839 20 10005089 . T <*> 0 . END=10005164 GT:GQ:MIN_DP:PL 0/0:50:24:0,93,929 20 10005165 . C <*> 0 . END=10005165 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10005166 . A <*> 0 . END=10005208 GT:GQ:MIN_DP:PL 0/0:50:25:0,78,779 20 10005209 . T <*> 0 . END=10005209 GT:GQ:MIN_DP:PL 0/0:33:31:0,33,809 20 10005210 . A <*> 0 . END=10005346 GT:GQ:MIN_DP:PL 0/0:50:23:0,90,899 20 10005347 . T <*> 0 . END=10005347 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10005348 . A <*> 0 . END=10005361 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 20 10005362 . G <*> 0 . END=10005362 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10005363 . C <*> 0 . END=10005395 GT:GQ:MIN_DP:PL 0/0:50:17:0,75,749 20 10005396 . G <*> 0 . END=10005396 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10005397 . T <*> 0 . END=10005421 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10005422 . A <*> 0 . END=10005422 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10005423 . A <*> 0 . END=10005426 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10005427 . C T,<*> 69.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:20:0,20,0:1,0:69,55,0,990,990,990 20 10005428 . A <*> 0 . END=10005433 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10005434 . A <*> 0 . END=10005435 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10005436 . C <*> 0 . END=10005498 GT:GQ:MIN_DP:PL 0/0:50:19:0,66,659 20 10005499 . A G,<*> 99 PASS . GT:GQ:DP:AD:VAF:PL 1/1:65:25:0,25,0:1,0:99,64,0,990,990,990 20 10005500 . T <*> 0 . END=10005501 GT:GQ:MIN_DP:PL 0/0:50:26:0,78,779 20 10005502 . T <*> 0 . END=10005502 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10005503 . A <*> 0 . END=10005586 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10005587 . A G,<*> 48.6 PASS . GT:GQ:DP:AD:VAF:PL 0/1:48:34:20,14,0:0.411765,0:48,0,58,990,990,990 20 10005588 . A <*> 0 . END=10005722 GT:GQ:MIN_DP:PL 0/0:50:26:0,102,1019 20 10005723 . A G,<*> 67.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:61:32:0,32,0:1,0:67,61,0,990,990,990 20 10005724 . A <*> 0 . END=10005999 GT:GQ:MIN_DP:PL 0/0:50:29:0,96,959 20 10006000 . G <*> 0 . END=10006047 GT:GQ:MIN_DP:PL 0/0:48:25:0,87,869 20 10006048 . C <*> 0 . END=10006048 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10006049 . T <*> 0 . END=10006064 GT:GQ:MIN_DP:PL 0/0:50:22:0,72,719 20 10006065 . T <*> 0 . END=10006065 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10006066 . A <*> 0 . END=10006094 GT:GQ:MIN_DP:PL 0/0:48:16:0,66,659 20 10006095 . A <*> 0 . END=10006101 GT:GQ:MIN_DP:PL 0/0:42:14:0,45,449 20 10006102 . T <*> 0 . END=10006117 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10006118 . G <*> 0 . END=10006118 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10006119 . T <*> 0 . END=10006149 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10006150 . G <*> 0 . END=10006151 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10006152 . C <*> 0 . END=10006163 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10006164 . G <*> 0 . END=10006166 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006167 . A <*> 0 . END=10006263 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 20 10006264 . T <*> 0 . END=10006264 GT:GQ:MIN_DP:PL ./.:0:31:26,0,716 20 10006265 . A <*> 0 . END=10006274 GT:GQ:MIN_DP:PL 0/0:50:31:0,93,929 20 10006275 . G <*> 0 . END=10006275 GT:GQ:MIN_DP:PL 0/0:39:33:0,39,869 20 10006276 . G <*> 0 . END=10006277 GT:GQ:MIN_DP:PL 0/0:50:30:0,66,899 20 10006278 . A <*> 0 . END=10006278 GT:GQ:MIN_DP:PL 0/0:30:30:0,30,779 20 10006279 . A <*> 0 . END=10006290 GT:GQ:MIN_DP:PL 0/0:50:27:0,90,899 20 10006291 . G A,<*> 52.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:52:29:17,12,0:0.413793,0:52,0,65,990,990,990 20 10006292 . A <*> 0 . END=10006303 GT:GQ:MIN_DP:PL 0/0:50:27:0,87,869 20 10006304 . C <*> 0 . END=10006304 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006305 . C <*> 0 . END=10006308 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10006309 . T <*> 0 . END=10006309 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006310 . A <*> 0 . END=10006357 GT:GQ:MIN_DP:PL 0/0:48:25:0,75,749 20 10006358 . A <*> 0 . END=10006358 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006359 . A <*> 0 . END=10006383 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10006384 . T <*> 0 . END=10006384 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10006385 . A <*> 0 . END=10006403 GT:GQ:MIN_DP:PL 0/0:50:22:0,75,749 20 10006404 . A C,<*> 58.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:48:24:1,23,0:0.958333,0:58,48,0,990,990,990 20 10006405 . C <*> 0 . END=10006405 GT:GQ:MIN_DP:PL 0/0:12:24:0,12,599 20 10006406 . A <*> 0 . END=10006410 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10006411 . T <*> 0 . END=10006411 GT:GQ:MIN_DP:PL 0/0:15:25:0,15,629 20 10006412 . T <*> 0 . END=10006412 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10006413 . C <*> 0 . END=10006460 GT:GQ:MIN_DP:PL 0/0:50:19:0,72,719 20 10006461 . T <*> 0 . END=10006461 GT:GQ:MIN_DP:PL 0/0:30:30:0,30,779 20 10006462 . A <*> 0 . END=10006605 GT:GQ:MIN_DP:PL 0/0:50:25:0,90,899 20 10006606 . G <*> 0 . END=10006606 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10006607 . A <*> 0 . END=10006615 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 20 10006616 . T <*> 0 . END=10006616 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10006617 . A <*> 0 . END=10006621 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10006622 . G <*> 0 . END=10006622 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10006623 . A <*> 0 . END=10006650 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10006651 . T <*> 0 . END=10006651 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10006652 . A <*> 0 . END=10006681 GT:GQ:MIN_DP:PL 0/0:48:24:0,75,749 20 10006682 . T A,<*> 65.7 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:23:0,23,0:1,0:65,55,0,990,990,990 20 10006683 . A <*> 0 . END=10006683 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10006684 . G <*> 0 . END=10006684 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10006685 . C <*> 0 . END=10006689 GT:GQ:MIN_DP:PL 0/0:50:22:0,72,719 20 10006690 . C <*> 0 . END=10006690 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10006691 . A <*> 0 . END=10006710 GT:GQ:MIN_DP:PL 0/0:50:20:0,69,689 20 10006711 . G <*> 0 . END=10006711 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10006712 . G <*> 0 . END=10006716 GT:GQ:MIN_DP:PL 0/0:50:20:0,69,689 20 10006717 . A <*> 0 . END=10006717 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10006718 . A <*> 0 . END=10006726 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10006727 . G <*> 0 . END=10006727 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006728 . G <*> 0 . END=10006789 GT:GQ:MIN_DP:PL 0/0:48:23:0,72,719 20 10006790 . T <*> 0 . END=10006790 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006791 . G <*> 0 . END=10006816 GT:GQ:MIN_DP:PL 0/0:48:21:0,72,719 20 10006817 . A <*> 0 . END=10006817 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006818 . A <*> 0 . END=10006818 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10006819 . AAAAC A,<*> 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:49:25:0,25,0:1,0:53,50,0,990,990,990 20 10006824 . A <*> 0 . END=10006824 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006825 . A <*> 0 . END=10006839 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10006840 . A <*> 0 . END=10006840 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10006841 . A <*> 0 . END=10006847 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10006848 . A <*> 0 . END=10006848 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10006849 . A <*> 0 . END=10006999 GT:GQ:MIN_DP:PL 0/0:48:24:0,75,749 20 10007000 . T <*> 0 . END=10007149 GT:GQ:MIN_DP:PL 0/0:50:27:0,105,1049 20 10007150 . G C,<*> 69.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:69:32:13,19,0:0.59375,0:68,0,99,990,990,990 20 10007151 . G <*> 0 . END=10007174 GT:GQ:MIN_DP:PL 0/0:50:29:0,93,929 20 10007175 . C T,<*> 69.2 PASS . GT:GQ:DP:AD:VAF:PL 0/1:69:33:17,16,0:0.484848,0:67,0,99,990,990,990 20 10007176 . T <*> 0 . END=10007246 GT:GQ:MIN_DP:PL 0/0:50:21:0,99,989 20 10007247 . G <*> 0 . END=10007247 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10007248 . C <*> 0 . END=10007265 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10007266 . G <*> 0 . END=10007266 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10007267 . T <*> 0 . END=10007302 GT:GQ:MIN_DP:PL 0/0:50:22:0,75,749 20 10007303 . G <*> 0 . END=10007303 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10007304 . A <*> 0 . END=10007351 GT:GQ:MIN_DP:PL 0/0:50:18:0,69,689 20 10007352 . C T,<*> 62.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:50:26:0,26,0:1,0:62,50,0,990,990,990 20 10007353 . A <*> 0 . END=10007497 GT:GQ:MIN_DP:PL 0/0:50:23:0,78,779 20 10007498 . T <*> 0 . END=10007498 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10007499 . T <*> 0 . END=10007514 GT:GQ:MIN_DP:PL 0/0:50:21:0,72,719 20 10007515 . G <*> 0 . END=10007515 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10007516 . T <*> 0 . END=10007530 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10007531 . A G,<*> 65.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:55:21:0,21,0:1,0:65,55,0,990,990,990 20 10007532 . G <*> 0 . END=10007544 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10007545 . G <*> 0 . END=10007545 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10007546 . A <*> 0 . END=10007548 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 20 10007549 . A <*> 0 . END=10007549 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10007550 . A <*> 0 . END=10007589 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 20 10007590 . A <*> 0 . END=10007590 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10007591 . C <*> 0 . END=10007650 GT:GQ:MIN_DP:PL 0/0:48:16:0,69,689 20 10007651 . A <*> 0 . END=10007651 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10007652 . T <*> 0 . END=10007652 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10007653 . A <*> 0 . END=10007653 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10007654 . T <*> 0 . END=10007654 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10007655 . G <*> 0 . END=10007655 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10007656 . C <*> 0 . END=10007660 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10007661 . A <*> 0 . END=10007661 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10007662 . C <*> 0 . END=10007666 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10007667 . A <*> 0 . END=10007667 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10007668 . G <*> 0 . END=10007668 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10007669 . C <*> 0 . END=10007669 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10007670 . A <*> 0 . END=10007678 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10007679 . G <*> 0 . END=10007679 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10007680 . C <*> 0 . END=10007691 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10007692 . C <*> 0 . END=10007692 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10007693 . C <*> 0 . END=10007707 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10007708 . T <*> 0 . END=10007708 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10007709 . T <*> 0 . END=10007710 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10007711 . G <*> 0 . END=10007711 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10007712 . A <*> 0 . END=10007731 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10007732 . C <*> 0 . END=10007732 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10007733 . A <*> 0 . END=10007743 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10007744 . T <*> 0 . END=10007744 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10007745 . T <*> 0 . END=10007749 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10007750 . C <*> 0 . END=10007750 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10007751 . T <*> 0 . END=10007792 GT:GQ:MIN_DP:PL 0/0:50:19:0,66,659 20 10007793 . C <*> 0 . END=10007793 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10007794 . A <*> 0 . END=10007795 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10007796 . C <*> 0 . END=10007796 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10007797 . T <*> 0 . END=10007800 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 20 10007801 . A <*> 0 . END=10007801 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10007802 . G <*> 0 . END=10007807 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10007808 . A <*> 0 . END=10007808 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10007809 . A <*> 0 . END=10007839 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 20 10007840 . T <*> 0 . END=10007840 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10007841 . T <*> 0 . END=10007940 GT:GQ:MIN_DP:PL 0/0:50:17:0,75,749 20 10007941 . C <*> 0 . END=10007941 GT:GQ:MIN_DP:PL 0/0:15:25:0,15,629 20 10007942 . T <*> 0 . END=10007949 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 20 10007950 . G <*> 0 . END=10007950 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10007951 . A <*> 0 . END=10007953 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10007954 . G <*> 0 . END=10007954 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10007955 . T <*> 0 . END=10007979 GT:GQ:MIN_DP:PL 0/0:48:22:0,78,779 20 10007980 . A C,<*> 56.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:21:1,20,0:0.952381,0:56,39,0,990,990,990 20 10007981 . A <*> 0 . END=10007988 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10007989 . C <*> 0 . END=10007989 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10007990 . T <*> 0 . END=10007999 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 20 10008000 . G <*> 0 . END=10008002 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10008003 . G <*> 0 . END=10008003 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10008004 . G <*> 0 . END=10008010 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10008011 . A <*> 0 . END=10008011 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10008012 . G <*> 0 . END=10008013 GT:GQ:MIN_DP:PL 0/0:48:24:0,72,719 20 10008014 . C <*> 0 . END=10008014 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10008015 . C <*> 0 . END=10008015 GT:GQ:MIN_DP:PL 0/0:15:25:0,15,629 20 10008016 . A <*> 0 . END=10008028 GT:GQ:MIN_DP:PL 0/0:48:26:0,78,779 20 10008029 . T TA,<*> 61 PASS . GT:GQ:DP:AD:VAF:PL 1/1:39:28:1,23,0:0.821429,0:61,39,0,990,990,990 20 10008030 . A <*> 0 . END=10008058 GT:GQ:MIN_DP:PL 0/0:50:25:0,84,839 20 10008059 . T <*> 0 . END=10008059 GT:GQ:MIN_DP:PL 0/0:27:29:0,27,749 20 10008060 . A <*> 0 . END=10008065 GT:GQ:MIN_DP:PL 0/0:50:28:0,87,869 20 10008066 . T <*> 0 . END=10008066 GT:GQ:MIN_DP:PL 0/0:21:27:0,21,689 20 10008067 . A <*> 0 . END=10008073 GT:GQ:MIN_DP:PL 0/0:48:24:0,84,839 20 10008074 . C <*> 0 . END=10008074 GT:GQ:MIN_DP:PL 0/0:24:28:0,24,719 20 10008075 . A <*> 0 . END=10008094 GT:GQ:MIN_DP:PL 0/0:48:25:0,84,839 20 10008095 . A <*> 0 . END=10008095 GT:GQ:MIN_DP:PL 0/0:24:28:0,24,719 20 10008096 . T <*> 0 . END=10008096 GT:GQ:MIN_DP:PL 0/0:48:26:0,48,719 20 10008097 . C <*> 0 . END=10008097 GT:GQ:MIN_DP:PL 0/0:21:27:0,21,689 20 10008098 . A <*> 0 . END=10008145 GT:GQ:MIN_DP:PL 0/0:48:23:0,78,779 20 10008146 . TA T,<*> 55.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:42:29:1,27,0:0.931035,0:55,42,0,990,990,990 20 10008148 . A <*> 0 . END=10008220 GT:GQ:MIN_DP:PL 0/0:48:24:0,87,869 20 10008221 . T C,<*> 57.1 PASS . GT:GQ:DP:AD:VAF:PL 1/1:46:24:1,23,0:0.958333,0:57,46,0,990,990,990 20 10008222 . T <*> 0 . END=10008283 GT:GQ:MIN_DP:PL 0/0:50:19:0,75,749 20 10008284 . A <*> 0 . END=10008284 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008285 . A <*> 0 . END=10008292 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10008293 . T <*> 0 . END=10008293 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10008294 . A <*> 0 . END=10008310 GT:GQ:MIN_DP:PL 0/0:50:21:0,72,719 20 10008311 . A <*> 0 . END=10008311 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10008312 . G <*> 0 . END=10008331 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10008332 . G <*> 0 . END=10008332 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10008333 . A <*> 0 . END=10008365 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 20 10008366 . T <*> 0 . END=10008366 GT:GQ:MIN_DP:PL 0/0:15:25:0,15,629 20 10008367 . A <*> 0 . END=10008372 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10008373 . C <*> 0 . END=10008373 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10008374 . A <*> 0 . END=10008377 GT:GQ:MIN_DP:PL 0/0:50:24:0,75,749 20 10008378 . G <*> 0 . END=10008378 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10008379 . A <*> 0 . END=10008382 GT:GQ:MIN_DP:PL 0/0:50:23:0,75,749 20 10008383 . A <*> 0 . END=10008383 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10008384 . A <*> 0 . END=10008457 GT:GQ:MIN_DP:PL 0/0:48:23:0,72,719 20 10008458 . T G,<*> 67.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:60:26:0,26,0:1,0:67,60,0,990,990,990 20 10008459 . A <*> 0 . END=10008473 GT:GQ:MIN_DP:PL 0/0:50:25:0,78,779 20 10008474 . C <*> 0 . END=10008474 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10008475 . A <*> 0 . END=10008558 GT:GQ:MIN_DP:PL 0/0:50:21:0,75,749 20 10008559 . G <*> 0 . END=10008559 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10008560 . T <*> 0 . END=10008583 GT:GQ:MIN_DP:PL 0/0:50:17:0,69,689 20 10008584 . G <*> 0 . END=10008584 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10008585 . A <*> 0 . END=10008592 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10008593 . C <*> 0 . END=10008593 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10008594 . T <*> 0 . END=10008598 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10008599 . G <*> 0 . END=10008599 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008600 . C <*> 0 . END=10008608 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10008609 . T <*> 0 . END=10008609 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10008610 . A <*> 0 . END=10008613 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 20 10008614 . C <*> 0 . END=10008614 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008615 . T <*> 0 . END=10008616 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10008617 . A <*> 0 . END=10008627 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10008628 . T <*> 0 . END=10008628 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008629 . A <*> 0 . END=10008632 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 20 10008633 . G <*> 0 . END=10008633 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10008634 . G <*> 0 . END=10008634 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008635 . C <*> 0 . END=10008638 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10008639 . G <*> 0 . END=10008639 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008640 . T <*> 0 . END=10008646 GT:GQ:MIN_DP:PL 0/0:50:20:0,63,629 20 10008647 . G <*> 0 . END=10008647 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10008648 . C <*> 0 . END=10008682 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10008683 . G <*> 0 . END=10008683 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10008684 . G <*> 0 . END=10008688 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10008689 . T <*> 0 . END=10008689 GT:GQ:MIN_DP:PL ./.:0:23:20,0,530 20 10008690 . G <*> 0 . END=10008691 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10008692 . A <*> 0 . END=10008692 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10008693 . T <*> 0 . END=10008697 GT:GQ:MIN_DP:PL 0/0:50:21:0,69,689 20 10008698 . A <*> 0 . END=10008698 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10008699 . G <*> 0 . END=10008700 GT:GQ:MIN_DP:PL 0/0:50:20:0,66,659 20 10008701 . T <*> 0 . END=10008702 GT:GQ:MIN_DP:PL 0/0:36:22:0,39,629 20 10008703 . A <*> 0 . END=10008705 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 20 10008706 . A <*> 0 . END=10008706 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10008707 . G <*> 0 . END=10008708 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10008709 . T <*> 0 . END=10008709 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10008710 . C <*> 0 . END=10008712 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10008713 . G <*> 0 . END=10008713 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008714 . A <*> 0 . END=10008714 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10008715 . C <*> 0 . END=10008715 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10008716 . C <*> 0 . END=10008717 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10008718 . T <*> 0 . END=10008718 GT:GQ:MIN_DP:PL 0/0:9:23:0,9,569 20 10008719 . C <*> 0 . END=10008724 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10008725 . T <*> 0 . END=10008725 GT:GQ:MIN_DP:PL 0/0:9:23:0,9,569 20 10008726 . A <*> 0 . END=10008727 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10008728 . C <*> 0 . END=10008728 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008729 . A <*> 0 . END=10008729 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10008730 . C <*> 0 . END=10008730 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10008731 . A <*> 0 . END=10008734 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10008735 . A <*> 0 . END=10008735 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10008736 . A <*> 0 . END=10008736 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10008737 . A <*> 0 . END=10008737 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10008738 . C <*> 0 . END=10008741 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10008742 . G T,<*> 57 PASS . GT:GQ:DP:AD:VAF:PL 0/1:51:21:6,15,0:0.714286,0:57,0,51,990,990,990 20 10008743 . T <*> 0 . END=10008749 GT:GQ:MIN_DP:PL 0/0:50:18:0,54,539 20 10008750 . T <*> 0 . END=10008750 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10008751 . A <*> 0 . END=10008755 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10008756 . T <*> 0 . END=10008756 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008757 . A <*> 0 . END=10008757 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10008758 . C CA,<*> 68.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:20:1,19,0:0.95,0:68,52,0,990,990,990 20 10008759 . A <*> 0 . END=10008779 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10008780 . G <*> 0 . END=10008780 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008781 . G <*> 0 . END=10008785 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10008786 . G <*> 0 . END=10008786 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10008787 . T <*> 0 . END=10008799 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 20 10008800 . T <*> 0 . END=10008800 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10008801 . A <*> 0 . END=10008801 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10008802 . G <*> 0 . END=10008803 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10008804 . C <*> 0 . END=10008804 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10008805 . C <*> 0 . END=10008805 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10008806 . C <*> 0 . END=10008806 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10008807 . A <*> 0 . END=10008812 GT:GQ:MIN_DP:PL 0/0:50:18:0,69,689 20 10008813 . T <*> 0 . END=10008813 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008814 . C <*> 0 . END=10008820 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10008821 . C <*> 0 . END=10008821 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10008822 . T <*> 0 . END=10008889 GT:GQ:MIN_DP:PL 0/0:50:17:0,66,659 20 10008890 . C <*> 0 . END=10008890 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10008891 . C <*> 0 . END=10008902 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10008903 . C <*> 0 . END=10008903 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10008904 . A <*> 0 . END=10008919 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 20 10008920 . T <*> 0 . END=10008920 GT:GQ:MIN_DP:PL ./.:1:19:2,0,452 20 10008921 . C CA,<*> 31.3 PASS . GT:GQ:DP:AD:VAF:PL 0/1:31:23:15,4,0:0.173913,0:31,0,43,990,990,990 20 10008922 . A <*> 0 . END=10008930 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10008931 . A <*> 0 . END=10008932 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10008933 . A <*> 0 . END=10008946 GT:GQ:MIN_DP:PL 0/0:48:24:0,78,779 20 10008947 . T <*> 0 . END=10008947 GT:GQ:MIN_DP:PL 0/0:27:29:0,27,749 20 10008948 . TA T,<*> 59.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:38:30:0,30,0:1,0:59,38,0,990,990,990 20 10008950 . A <*> 0 . END=10008951 GT:GQ:MIN_DP:PL 0/0:50:28:0,90,899 20 10008952 . CACACACACACA C,CCACACACACA,<*> 61.8 PASS . GT:GQ:DP:AD:VAF:PL 1/2:36:28:0,16,12,0:0.571429,0.428571,0:61,39,64,39,0,44,990,990,990,990 20 10008964 . C <*> 0 . END=10008999 GT:GQ:MIN_DP:PL 0/0:50:29:0,87,869 20 10009000 . T <*> 0 . END=10009060 GT:GQ:MIN_DP:PL 0/0:50:30:0,96,959 20 10009061 . T <*> 0 . END=10009061 GT:GQ:MIN_DP:PL 0/0:42:34:0,42,899 20 10009062 . T <*> 0 . END=10009226 GT:GQ:MIN_DP:PL 0/0:50:30:0,105,1049 20 10009227 . A G,<*> 63.7 PASS . GT:GQ:DP:AD:VAF:PL 0/1:61:31:14,17,0:0.548387,0:63,0,65,990,990,990 20 10009228 . G <*> 0 . END=10009245 GT:GQ:MIN_DP:PL 0/0:50:29:0,87,869 20 10009246 . A G,<*> 99 PASS . GT:GQ:DP:AD:VAF:PL 1/1:99:35:0,35,0:1,0:99,76,0,990,990,990 20 10009247 . A <*> 0 . END=10009399 GT:GQ:MIN_DP:PL 0/0:50:32:0,108,1079 20 10009400 . T A,<*> 64.6 PASS . GT:GQ:DP:AD:VAF:PL 1/1:56:33:0,32,0:0.969697,0:64,56,0,990,990,990 20 10009401 . A <*> 0 . END=10009425 GT:GQ:MIN_DP:PL 0/0:50:25:0,99,989 20 10009426 . G <*> 0 . END=10009426 GT:GQ:MIN_DP:PL 0/0:45:25:0,45,689 20 10009427 . T <*> 0 . END=10009453 GT:GQ:MIN_DP:PL 0/0:50:20:0,75,749 20 10009454 . T <*> 0 . END=10009454 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10009455 . A <*> 0 . END=10009476 GT:GQ:MIN_DP:PL 0/0:50:22:0,69,689 20 10009477 . T <*> 0 . END=10009477 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10009478 . G <*> 0 . END=10009511 GT:GQ:MIN_DP:PL 0/0:48:22:0,66,659 20 10009512 . C G,<*> 66.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:59:26:0,26,0:1,0:66,59,0,990,990,990 20 10009513 . A <*> 0 . END=10009557 GT:GQ:MIN_DP:PL 0/0:50:20:0,78,779 20 10009558 . T <*> 0 . END=10009558 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10009559 . T <*> 0 . END=10009640 GT:GQ:MIN_DP:PL 0/0:48:16:0,63,629 20 10009641 . T <*> 0 . END=10009641 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10009642 . A <*> 0 . END=10009648 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10009649 . G <*> 0 . END=10009649 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10009650 . T <*> 0 . END=10009650 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10009651 . T <*> 0 . END=10009651 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10009652 . T <*> 0 . END=10009652 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10009653 . C <*> 0 . END=10009653 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10009654 . A <*> 0 . END=10009655 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10009656 . G <*> 0 . END=10009656 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10009657 . C <*> 0 . END=10009663 GT:GQ:MIN_DP:PL 0/0:48:16:0,51,509 20 10009664 . T <*> 0 . END=10009664 GT:GQ:MIN_DP:PL 0/0:45:15:0,45,449 20 10009665 . T <*> 0 . END=10009673 GT:GQ:MIN_DP:PL 0/0:48:16:0,48,479 20 10009674 . G <*> 0 . END=10009674 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10009675 . A <*> 0 . END=10009691 GT:GQ:MIN_DP:PL 0/0:50:17:0,54,539 20 10009692 . T <*> 0 . END=10009692 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10009693 . A <*> 0 . END=10009707 GT:GQ:MIN_DP:PL 0/0:48:16:0,54,539 20 10009708 . C <*> 0 . END=10009708 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10009709 . A <*> 0 . END=10009718 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 20 10009719 . A G,<*> 66.3 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:19:0,18,0:0.947368,0:66,53,0,990,990,990 20 10009720 . T <*> 0 . END=10009730 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10009731 . C <*> 0 . END=10009731 GT:GQ:MIN_DP:PL 0/0:3:20:0,0,479 20 10009732 . T <*> 0 . END=10009733 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009734 . G <*> 0 . END=10009734 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10009735 . C <*> 0 . END=10009753 GT:GQ:MIN_DP:PL 0/0:50:17:0,60,599 20 10009754 . A <*> 0 . END=10009754 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10009755 . G <*> 0 . END=10009778 GT:GQ:MIN_DP:PL 0/0:50:17:0,57,569 20 10009779 . C <*> 0 . END=10009780 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10009781 . A <*> 0 . END=10009786 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10009787 . T <*> 0 . END=10009787 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10009788 . C <*> 0 . END=10009788 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10009789 . A <*> 0 . END=10009789 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009790 . A <*> 0 . END=10009793 GT:GQ:MIN_DP:PL 0/0:48:16:0,66,659 20 10009794 . T <*> 0 . END=10009794 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009795 . A G,<*> 62 PASS . GT:GQ:DP:AD:VAF:PL 1/1:53:22:0,21,0:0.954545,0:61,53,0,990,990,990 20 10009796 . C <*> 0 . END=10009796 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10009797 . A <*> 0 . END=10009797 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 20 10009798 . G <*> 0 . END=10009800 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10009801 . A <*> 0 . END=10009801 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10009802 . G <*> 0 . END=10009803 GT:GQ:MIN_DP:PL 0/0:48:16:0,57,569 20 10009804 . T <*> 0 . END=10009804 GT:GQ:MIN_DP:PL ./.:1:19:2,0,452 20 10009805 . A <*> 0 . END=10009812 GT:GQ:MIN_DP:PL 0/0:50:19:0,60,599 20 10009813 . G <*> 0 . END=10009813 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009814 . C <*> 0 . END=10009815 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10009816 . A <*> 0 . END=10009816 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10009817 . G <*> 0 . END=10009817 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009818 . T <*> 0 . END=10009818 GT:GQ:MIN_DP:PL ./.:1:19:2,0,452 20 10009819 . G <*> 0 . END=10009821 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 20 10009822 . C <*> 0 . END=10009822 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009823 . T <*> 0 . END=10009823 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 20 10009824 . C <*> 0 . END=10009824 GT:GQ:MIN_DP:PL 0/0:18:16:0,18,419 20 10009825 . C <*> 0 . END=10009825 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10009826 . A <*> 0 . END=10009830 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 20 10009831 . A <*> 0 . END=10009831 GT:GQ:MIN_DP:PL 0/0:3:20:0,0,479 20 10009832 . G <*> 0 . END=10009833 GT:GQ:MIN_DP:PL 0/0:50:17:0,51,509 20 10009834 . G <*> 0 . END=10009834 GT:GQ:MIN_DP:PL 0/0:21:17:0,21,449 20 10009835 . A <*> 0 . END=10009836 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10009837 . A <*> 0 . END=10009837 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10009838 . G <*> 0 . END=10009838 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10009839 . A <*> 0 . END=10009840 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009841 . A <*> 0 . END=10009841 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10009842 . G <*> 0 . END=10009843 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009844 . G A,<*> 58.4 PASS . GT:GQ:DP:AD:VAF:PL 1/1:40:21:1,20,0:0.952381,0:58,40,0,990,990,990 20 10009845 . A <*> 0 . END=10009845 GT:GQ:MIN_DP:PL 0/0:36:22:0,36,599 20 10009846 . G <*> 0 . END=10009848 GT:GQ:MIN_DP:PL 0/0:50:18:0,60,599 20 10009849 . A <*> 0 . END=10009849 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 20 10009850 . G <*> 0 . END=10009855 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10009856 . G <*> 0 . END=10009856 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10009857 . A <*> 0 . END=10009857 GT:GQ:MIN_DP:PL 0/0:7:22:0,6,539 20 10009858 . G <*> 0 . END=10009860 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10009861 . A <*> 0 . END=10009861 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 20 10009862 . G <*> 0 . END=10009864 GT:GQ:MIN_DP:PL 0/0:50:18:0,63,629 20 10009865 . A <*> 0 . END=10009865 GT:GQ:MIN_DP:PL 0/0:4:21:0,3,509 20 10009866 . G <*> 0 . END=10009870 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10009871 . A G,<*> 28.8 PASS . GT:GQ:DP:AD:VAF:PL 1/1:5:22:5,17,0:0.772727,0:27,3,0,990,990,990 20 10009872 . G <*> 0 . END=10009874 GT:GQ:MIN_DP:PL 0/0:50:21:0,66,659 20 10009875 . A G,<*> 30.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:16:19:3,16,0:0.842105,0:30,16,0,990,990,990 20 10009876 . G <*> 0 . END=10009878 GT:GQ:MIN_DP:PL 0/0:50:18:0,57,569 20 10009879 . A G,<*> 53.9 PASS . GT:GQ:DP:AD:VAF:PL 1/1:43:20:0,20,0:1,0:53,43,0,990,990,990 20 10009880 . G <*> 0 . END=10009880 GT:GQ:MIN_DP:PL 0/0:50:21:0,63,629 20 10009881 . A <*> 0 . END=10009881 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009882 . G <*> 0 . END=10009882 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009883 . A G,<*> 55.5 PASS . GT:GQ:DP:AD:VAF:PL 1/1:44:19:0,19,0:1,0:55,44,0,990,990,990 20 10009884 . G <*> 0 . END=10009884 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009885 . A <*> 0 . END=10009885 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10009886 . A <*> 0 . END=10009886 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009887 . G <*> 0 . END=10009887 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009888 . A <*> 0 . END=10009888 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009889 . A <*> 0 . END=10009889 GT:GQ:MIN_DP:PL 0/0:24:18:0,24,479 20 10009890 . G <*> 0 . END=10009890 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009891 . G <*> 0 . END=10009891 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10009892 . A <*> 0 . END=10009892 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009893 . A <*> 0 . END=10009893 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009894 . G <*> 0 . END=10009894 GT:GQ:MIN_DP:PL 0/0:33:21:0,33,569 20 10009895 . G <*> 0 . END=10009895 GT:GQ:MIN_DP:PL 0/0:50:22:0,66,659 20 10009896 . A <*> 0 . END=10009896 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10009897 . A <*> 0 . END=10009897 GT:GQ:MIN_DP:PL 0/0:50:23:0,69,689 20 10009898 . G <*> 0 . END=10009898 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10009899 . G <*> 0 . END=10009927 GT:GQ:MIN_DP:PL 0/0:50:20:0,69,689 20 10009928 . G <*> 0 . END=10009928 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10009929 . A <*> 0 . END=10009933 GT:GQ:MIN_DP:PL 0/0:50:24:0,72,719 20 10009934 . A <*> 0 . END=10009934 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10009935 . T <*> 0 . END=10009952 GT:GQ:MIN_DP:PL 0/0:50:19:0,69,689 20 10009953 . C <*> 0 . END=10009953 GT:GQ:MIN_DP:PL 0/0:27:19:0,27,509 20 10009954 . C <*> 0 . END=10009959 GT:GQ:MIN_DP:PL 0/0:50:19:0,57,569 20 10009960 . G <*> 0 . END=10009960 GT:GQ:MIN_DP:PL 0/0:30:20:0,30,539 20 10009961 . A <*> 0 . END=10009969 GT:GQ:MIN_DP:PL 0/0:50:20:0,60,599 20 10009970 . T <*> 0 . END=10009970 GT:GQ:MIN_DP:PL 0/0:39:23:0,39,629 20 10009971 . T <*> 0 . END=10009988 GT:GQ:MIN_DP:PL 0/0:48:23:0,69,689 20 10009989 . A <*> 0 . END=10009989 GT:GQ:MIN_DP:PL 0/0:42:24:0,42,659 20 10009990 . T <*> 0 . END=10009999 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749 20 10010000 . C <*> 0 . END=10010000 GT:GQ:MIN_DP:PL 0/0:50:25:0,75,749