deepvariant-r1.6.1 / Git / Commit [9b26b7]

Catherine Stones

deepvariant-r1.6.1

Downloads: 0

Commit [9b26b7] main

Initial commit

Authored by: cathy-stones 2024-08-08

Browse code at this revision

<< < 1 .. 12 13 14 15 16 .. 31 > >> (Page 14 of 31)

added	deepvariant/testdata/input/ucsc.hg19.chr20.unittest.fasta.gz
added	deepvariant/testdata/input/ucsc.hg19.chr20.unittest.fasta.gz.fai
added	deepvariant/testdata/input/ucsc.hg19.chr20.unittest.fasta.gz.gzi
added	deepvariant/testdata/input/vcf_candidate_importer.indels.chr20.vcf.gz
added	deepvariant/testdata/input/vcf_candidate_importer.indels.chr20.vcf.gz.tbi
added	deepvariant/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz
added	deepvariant/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz.tbi
added	deepvariant/testdata/obsolete/window_selector_allele_count_linear.pbtxt
added	deepvariant/testdata/obsolete/window_selector_allele_count_linear.pckl
added	deepvariant/testdata/obsolete/window_selector_variant_read_threshold.pbtxt
added	deepvariant/train.py
added	deepvariant/train_inceptionv3.py
added	deepvariant/utils.cc
added	deepvariant/utils.h
added	deepvariant/utils_test.cc
added	deepvariant/variant_caller.py
added	deepvariant/variant_caller_test.py
added	deepvariant/variant_caller_trio_test.py
added	deepvariant/variant_calling.cc
added	deepvariant/variant_calling.h
added	deepvariant/variant_calling_multisample.cc
added	deepvariant/variant_calling_multisample.h
added	deepvariant/variant_calling_multisample_somatic_test.cc
added	deepvariant/variant_calling_multisample_trio_test.cc
added	deepvariant/variant_calling_test.cc

deepvariant/testdata/input/ucsc.hg19.chr20.unittest.fasta.gz

Binary file was added.

deepvariant/testdata/input/ucsc.hg19.chr20.unittest.fasta.gz.fai Diff Switch to side-by-side view

deepvariant/testdata/input/ucsc.hg19.chr20.unittest.fasta.gz.gzi

Binary file was added.

deepvariant/testdata/input/vcf_candidate_importer.indels.chr20.vcf.gz

Binary file was added.

deepvariant/testdata/input/vcf_candidate_importer.indels.chr20.vcf.gz.tbi

Binary file was added.

deepvariant/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz

Binary file was added.

deepvariant/testdata/input/with_types.test_nist.b37_chr20_4kbp_at_10mb.vcf.gz.tbi

Binary file was added.

deepvariant/testdata/obsolete/window_selector_allele_count_linear.pbtxt Diff Switch to side-by-side view

deepvariant/testdata/obsolete/window_selector_allele_count_linear.pckl

Binary file was added.

deepvariant/testdata/obsolete/window_selector_variant_read_threshold.pbtxt Diff Switch to side-by-side view

deepvariant/train.py Diff Switch to side-by-side view

deepvariant/train_inceptionv3.py Diff Switch to side-by-side view

deepvariant/utils.cc Diff Switch to side-by-side view

deepvariant/utils.h Diff Switch to side-by-side view

deepvariant/utils_test.cc Diff Switch to side-by-side view

deepvariant/variant_caller.py Diff Switch to side-by-side view

deepvariant/variant_caller_test.py Diff Switch to side-by-side view

deepvariant/variant_caller_trio_test.py Diff Switch to side-by-side view

deepvariant/variant_calling.cc Diff Switch to side-by-side view

deepvariant/variant_calling.h Diff Switch to side-by-side view

deepvariant/variant_calling_multisample.cc Diff Switch to side-by-side view

deepvariant/variant_calling_multisample.h Diff Switch to side-by-side view

deepvariant/variant_calling_multisample_somatic_test.cc Diff Switch to side-by-side view

deepvariant/variant_calling_multisample_trio_test.cc Diff Switch to side-by-side view

deepvariant/variant_calling_test.cc Diff Switch to side-by-side view

<< < 1 .. 12 13 14 15 16 .. 31 > >> (Page 14 of 31)